Rh5AG001300
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001342
Physical Location & Seq
Forward (+)
154912 .. 160456
5545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG001300.1

Sequence Viewer

Length: 1215 bp
ATGGGAGGAGGAGGGAAGTGGAAATGGGATATTGAGCCCTTTATTGAGCACAAAAGAGCTTCTATGCCGACATGTGCTTTGAACATGCTTAAAGATTCTGTTGTTGATTGTAGTCATCCATATGCTGAATTGTTTGGAAGAAAGAGTGGATTAGCATATGTTAGGGTTGCTGGGAGTGATGGTATTTTGGGGCTTAATGGTGGCTGCTCTAATGCTCCAAACATTGGCGTTGAAGAAGCGCGGAATGATGAAAGTGCATTGCCTTCCAAGAGGGGTAAAAATGCCTCAGAAACCGAAAAAGTGGCGGATGAAAACTATGATGGTTCAGGTGTAAATGCCAAGAAGATGAAGATGGATGACTCTTATGTTTTGCAGTCGGCACAGGACAACTCAGTTCCTTTAGCGGGAAGAGAAATGTTGGAAGGTTCATTGGAAAGGGACATTCCAGTTTCCCAGAGAGAAAAGTGTGTGTTGTCAGAATTTCGGATGGATATGAGGGTGGAAACGTGGGCACTAGAGGATGGTCGTGGTGATTATACTGCCTCAAAGACAAGTGGGGATGCAATCCATAAGAGTTTTGTAGAAAATCCTTGTGCTGATAAATTCAAAGATGGTAGTGGGTTTAGTCCTGAACGTACAATATCAGGTATTGCTCCTCCACATGAGACGCAGCATAAGGTTTCTGCTAAAGACTCCAGTTGTAACATTGACCATGAGTTTCATATTGAAGTACCACATCCTGTATCTGTTGATGGATCCAAACAGAAGAGCATTGCTGATAAAGGCAAAGGTGTTAGTGAGCATTGTCCTAAACTAACAACATCACCTGTTGCTCCTCCAGATGTATCCCAGAAGAAGACCATTGCTGATGGAGTCAAGGACCTCTCACACTGGGATTTCATCGCCATGGAGAAGCGTGATTTCTTGAGCTCTAAATGTGCATTGACTCGTTATTACTATTCGAAAGAGAAAGATCATTGTCTAATGTGTAATGAAGGTGGTCAGTTGTTGATTTGTAGTACCAGTGATTGCCCTTTGGCGTATCATGAAAGCTGCATGGGTTCCAAATTTATCTCTTATAAGACCGGTGACTTTTACTGTCCCTTCTGTGCATATGATCTAGATCTCACGGAGTATCTTGAAGCTGAGAAAGAAGCCTCCCGGTTAAAGAAGGACCTATGGGCGTTTCTTTGTTTGCTAGGATCATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

404

Amino Acids

44.41

Weight (kDa)

5.54

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1080
AccB7I CCANNNNNTGG 1 cut(s) 224
AccII CGCG 1 cut(s) 241
AciI CCGC 3 cut(s) 241, 305, 404
AclWI GGATC 3 cut(s) 750, 763, 1210
AcsI RAATTY 3 cut(s) 479, 602, 1067
AfaI GTAC 3 cut(s) 637, 732, 1021
AfiI CCNNNNNNNGG 2 cut(s) 224, 404
AflIII ACRYGT 1 cut(s) 71
AgeI ACCGGT 1 cut(s) 1085
AgsI TTSAA 5 cut(s) 82, 233, 607, 728, 1142
AluBI AGCT 4 cut(s) 59, 930, 1053, 1145
AluI AGCT 4 cut(s) 59, 930, 1053, 1145
Alw21I GWGCWC 2 cut(s) 51, 932
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 3 cut(s) 750, 763, 1210
ApeKI GCWGC 3 cut(s) 204, 670, 1053
ApoI RAATTY 3 cut(s) 479, 602, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AsiGI ACCGGT 1 cut(s) 1085
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 2 cut(s) 880, 1174
AsuC2I CCSGG 1 cut(s) 1162
AsuHPI GGTGA 3 cut(s) 542, 816, 1100
AsuII TTCGAA 1 cut(s) 962
AvaII GGWCC 2 cut(s) 880, 1174
BaeGI GKGCMC 1 cut(s) 514
BamHI GGATCC 1 cut(s) 755
BanII GRGCYC 2 cut(s) 39, 932
BbsI GAAGAC 1 cut(s) 863
Bbv12I GWGCWC 2 cut(s) 51, 932
BbvI GCAGC 3 cut(s) 191, 682, 1040
BccI CCATC 8 cut(s) 173, 314, 346, 481, 515, 605, 746, 863
BciVI GTATCC 1 cut(s) 856
BcnI CCSGG 1 cut(s) 1162
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 3 cut(s) 515, 1121, 1199
BfuI GTATCC 1 cut(s) 856
BglII AGATCT 1 cut(s) 1123
BisI GCNGC 3 cut(s) 205, 671, 1054
BlsI GCNGC 3 cut(s) 206, 672, 1055
Bme1390I CCNGG 1 cut(s) 1162
Bme18I GGWCC 2 cut(s) 880, 1174
BmgT120I GGNCC 2 cut(s) 880, 1174
BmiI GGNNCC 2 cut(s) 757, 1063
BmrFI CCNGG 1 cut(s) 1162
BmrI ACTGGG 1 cut(s) 901
BmsI GCATC 1 cut(s) 550
BmuI ACTGGG 1 cut(s) 901
BpiI GAAGAC 1 cut(s) 863
BpmI CTGGAG 2 cut(s) 679, 822
Bpu14I TTCGAA 1 cut(s) 962
BpuEI CTTGAG 1 cut(s) 946
BpuMI CCSGG 1 cut(s) 1162
BsaBI GATNNNNATC 1 cut(s) 1122
BsaJI CCNNGG 1 cut(s) 906
BsaWI WCCGGW 1 cut(s) 1085
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 404
Bse118I RCCGGY 1 cut(s) 1085
Bse1I ACTGG 4 cut(s) 446, 696, 896, 1023
Bse3DI GCAATG 3 cut(s) 257, 771, 861
Bse8I GATNNNNATC 1 cut(s) 1122
BseDI CCNNGG 1 cut(s) 906
BseGI GGATG 7 cut(s) 115, 313, 361, 492, 526, 565, 736
BseJI GATNNNNATC 1 cut(s) 1122
BseLI CCNNNNNNNGG 2 cut(s) 224, 404
BseMI GCAATG 3 cut(s) 257, 771, 861
BseMII CTCAG 3 cut(s) 300, 405, 1137
BseNI ACTGG 4 cut(s) 446, 696, 896, 1023
BseRI GAGGAG 4 cut(s) 21, 24, 645, 825
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 3 cut(s) 191, 682, 1040
BseYI CCCAGC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 241
BshTI ACCGGT 1 cut(s) 1085
BsiHKAI GWGCWC 2 cut(s) 51, 932
BsiSI CCGG 2 cut(s) 1086, 1162
BslFI GGGAC 2 cut(s) 452, 1086
BslI CCNNNNNNNGG 2 cut(s) 224, 404
BsmAI GTCTC 1 cut(s) 659
BsmBI CGTCTC 1 cut(s) 659
BsmFI GGGAC 2 cut(s) 452, 1086
Bsp119I TTCGAA 1 cut(s) 962
Bsp1286I GDGCHC 4 cut(s) 39, 51, 514, 932
Bsp143I GATC 5 cut(s) 755, 973, 1117, 1123, 1202
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 3 cut(s) 241, 305, 404
BspCNI CTCAG 3 cut(s) 299, 404, 1138
BspFNI CGCG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 2 cut(s) 757, 1063
BspPI GGATC 3 cut(s) 750, 763, 1210
BspQI GCTCTTC 1 cut(s) 761
BspT104I TTCGAA 1 cut(s) 962
BsrDI GCAATG 3 cut(s) 257, 771, 861
BsrFI RCCGGY 1 cut(s) 1085
BsrI ACTGG 4 cut(s) 446, 696, 896, 1023
BssAI RCCGGY 1 cut(s) 1085
BssECI CCNNGG 1 cut(s) 906
BssMI GATC 5 cut(s) 755, 973, 1117, 1123, 1202
BssT1I CCWWGG 1 cut(s) 906
Bst4CI ACNGT 1 cut(s) 1100
Bst6I CTCTTC 2 cut(s) 403, 761
BstBI TTCGAA 1 cut(s) 962
BstDEI CTNAG 3 cut(s) 286, 391, 1146
BstDSI CCRYGG 1 cut(s) 906
BstF5I GGATG 7 cut(s) 115, 313, 361, 492, 526, 565, 736
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 5 cut(s) 758, 976, 1120, 1126, 1205
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 5 cut(s) 755, 973, 1117, 1123, 1202
BstNSI RCATGY 2 cut(s) 75, 88
BstSCI CCNGG 1 cut(s) 1160
BstSLI GKGCMC 1 cut(s) 514
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 3 cut(s) 191, 682, 1040
BstV2I GAAGAC 1 cut(s) 863
BstX2I RGATCY 2 cut(s) 755, 1123
BstYI RGATCY 2 cut(s) 755, 1123
BsuI GTATCC 1 cut(s) 856
BtgI CCRYGG 1 cut(s) 906
BtgZI GCGATG 1 cut(s) 886
BtsCI GGATG 7 cut(s) 115, 313, 361, 492, 526, 565, 736
BtsIMutI CAGTG 2 cut(s) 889, 1030
CciI TCATGA 1 cut(s) 1045
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 1085
Cfr13I GGNCC 2 cut(s) 880, 1174
CseI GACGC 1 cut(s) 676
Csp6I GTAC 3 cut(s) 636, 731, 1020
CspAI ACCGGT 1 cut(s) 1085
CviAII CATG 7 cut(s) 72, 85, 662, 713, 907, 1046, 1057
CviJI RGCY 8 cut(s) 37, 59, 193, 204, 930, 1053, 1145, 1157
CviKI_1 RGCY 8 cut(s) 37, 59, 193, 204, 930, 1053, 1145, 1157
CviQI GTAC 3 cut(s) 636, 731, 1020
DdeI CTNAG 3 cut(s) 286, 391, 1146
DpnI GATC 5 cut(s) 757, 975, 1119, 1125, 1204
DpnII GATC 5 cut(s) 755, 973, 1117, 1123, 1202
Eam1104I CTCTTC 2 cut(s) 403, 761
EarI CTCTTC 2 cut(s) 403, 761
EciI GGCGGA 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 930
Eco130I CCWWGG 1 cut(s) 906
Eco24I GRGCYC 2 cut(s) 39, 932
Eco47I GGWCC 2 cut(s) 880, 1174
Eco53kI GAGCTC 1 cut(s) 930
EcoICRI GAGCTC 1 cut(s) 930
EcoO109I RGGNCCY 2 cut(s) 880, 1174
EcoT14I CCWWGG 1 cut(s) 906
EcoT38I GRGCYC 2 cut(s) 39, 932
ErhI CCWWGG 1 cut(s) 906
Esp3I CGTCTC 1 cut(s) 659
FaeI CATG 7 cut(s) 75, 88, 665, 716, 910, 1049, 1060
FaqI GGGAC 2 cut(s) 452, 1086
FatI CATG 7 cut(s) 71, 84, 661, 712, 906, 1045, 1056
FauI CCCGC 1 cut(s) 397
FauNDI CATATG 3 cut(s) 121, 157, 1114
Fnu4HI GCNGC 3 cut(s) 205, 671, 1054
FokI GGATG 7 cut(s) 102, 320, 368, 499, 533, 572, 723
FriOI GRGCYC 2 cut(s) 39, 932
Fsp4HI GCNGC 3 cut(s) 205, 671, 1054
FspBI CTAG 3 cut(s) 515, 1121, 1199
GlaI GCGC 1 cut(s) 240
GluI GCNGC 3 cut(s) 205, 671, 1054
GsaI CCCAGC 1 cut(s) 174
GsuI CTGGAG 2 cut(s) 679, 822
HapII CCGG 2 cut(s) 1086, 1162
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 241
Hin1II CATG 7 cut(s) 75, 88, 665, 716, 910, 1049, 1060
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HinfI GANTC 5 cut(s) 95, 359, 692, 873, 946
HpaII CCGG 2 cut(s) 1086, 1162
HphI GGTGA 3 cut(s) 542, 816, 1100
Hpy188I TCNGA 3 cut(s) 289, 478, 486
Hpy188III TCNNGA 7 cut(s) 629, 839, 925, 1046, 1121, 1139, 1212
HpyAV CCTTC 5 cut(s) 273, 416, 989, 1114, 1165
HpyCH4III ACNGT 1 cut(s) 1100
HpyCH4IV ACGT 2 cut(s) 506, 634
HpyCH4V TGCA 6 cut(s) 257, 373, 563, 941, 1056, 1112
HpyF3I CTNAG 3 cut(s) 286, 391, 1146
HpySE526I ACGT 2 cut(s) 506, 634
Hsp92II CATG 7 cut(s) 75, 88, 665, 716, 910, 1049, 1060
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 5 cut(s) 755, 973, 1117, 1123, 1202
LguI GCTCTTC 1 cut(s) 761
LmnI GCTCC 3 cut(s) 220, 658, 838
Lsp1109I GCAGC 3 cut(s) 191, 682, 1040
LweI GCATC 1 cut(s) 550
MaeI CTAG 3 cut(s) 515, 1121, 1199
MaeII ACGT 2 cut(s) 506, 634
MaeIII GTNAC 2 cut(s) 701, 1088
MalI GATC 5 cut(s) 757, 975, 1119, 1125, 1204
MboI GATC 5 cut(s) 755, 973, 1117, 1123, 1202
MboII GAAGA 9 cut(s) 150, 245, 355, 361, 420, 778, 865, 868, 1200
MflI RGATCY 2 cut(s) 755, 1123
MhlI GDGCHC 4 cut(s) 39, 51, 514, 932
MluCI AATT 4 cut(s) 128, 479, 602, 1067
MlyI GAGTC 4 cut(s) 353, 686, 882, 940
MmeI TCCRAC 1 cut(s) 399
MseI TTAA 3 cut(s) 90, 195, 1166
MslI CAYNNNNRTG 2 cut(s) 120, 905
MspI CCGG 2 cut(s) 1086, 1162
MspR9I CCNGG 1 cut(s) 1162
MvnI CGCG 1 cut(s) 241
NciI CCSGG 1 cut(s) 1162
NcoI CCATGG 1 cut(s) 906
NdeI CATATG 3 cut(s) 121, 157, 1114
NdeII GATC 5 cut(s) 755, 973, 1117, 1123, 1202
NlaIII CATG 7 cut(s) 75, 88, 665, 716, 910, 1049, 1060
NlaIV GGNNCC 2 cut(s) 757, 1063
NmuCI GTSAC 1 cut(s) 1088
NspI RCATGY 2 cut(s) 75, 88
NspV TTCGAA 1 cut(s) 962
PagI TCATGA 1 cut(s) 1045
PciI ACATGT 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 761
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 1085
PkrI GCNGC 3 cut(s) 206, 672, 1055
PleI GAGTC 4 cut(s) 353, 686, 881, 940
PpsI GAGTC 4 cut(s) 353, 686, 881, 940
PpuMI RGGWCCY 2 cut(s) 880, 1174
PscI ACATGT 1 cut(s) 71
PsiI TTATAA 1 cut(s) 1080
Psp124BI GAGCTC 1 cut(s) 932
Psp5II RGGWCCY 2 cut(s) 880, 1174
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 757, 1063
PspPI GGNCC 2 cut(s) 880, 1174
PspPPI RGGWCCY 2 cut(s) 880, 1174
PsuI RGATCY 2 cut(s) 755, 1123
RsaI GTAC 3 cut(s) 637, 732, 1021
RsaNI GTAC 3 cut(s) 636, 731, 1020
RseI CAYNNNNRTG 2 cut(s) 120, 905
SacI GAGCTC 1 cut(s) 932
SapI GCTCTTC 1 cut(s) 761
SaqAI TTAA 3 cut(s) 90, 195, 1166
SatI GCNGC 3 cut(s) 205, 671, 1054
Sau3AI GATC 5 cut(s) 755, 973, 1117, 1123, 1202
Sau96I GGNCC 2 cut(s) 880, 1174
SchI GAGTC 4 cut(s) 353, 686, 882, 940
ScrFI CCNGG 1 cut(s) 1162
SduI GDGCHC 4 cut(s) 39, 51, 514, 932
SfaNI GCATC 1 cut(s) 550
SfuI TTCGAA 1 cut(s) 962
SinI GGWCC 2 cut(s) 880, 1174
SmiMI CAYNNNNRTG 2 cut(s) 120, 905
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
Sse9I AATT 4 cut(s) 128, 479, 602, 1067
SsiI CCGC 3 cut(s) 241, 305, 404
SspMI CTAG 3 cut(s) 515, 1121, 1199
SstI GAGCTC 1 cut(s) 932
StyD4I CCNGG 1 cut(s) 1160
StyI CCWWGG 1 cut(s) 906
TaaI ACNGT 1 cut(s) 1100
TaiI ACGT 2 cut(s) 509, 637
TaqI TCGA 1 cut(s) 962
TasI AATT 4 cut(s) 128, 479, 602, 1067
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 90, 195, 1166
Tru9I TTAA 3 cut(s) 90, 195, 1166
TscAI CASTG 2 cut(s) 896, 1030
TseFI GTSAC 1 cut(s) 1088
TseI GCWGC 3 cut(s) 204, 670, 1053
Tsp45I GTSAC 1 cut(s) 1088
TspDTI ATGAA 8 cut(s) 264, 324, 362, 417, 710, 889, 1008, 1062
TspGWI ACGGA 1 cut(s) 1145
TspRI CASTG 2 cut(s) 896, 1030
Van91I CCANNNNNTGG 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 880, 1174
XapI RAATTY 3 cut(s) 479, 602, 1067
XbaI TCTAGA 1 cut(s) 1120
XceI RCATGY 2 cut(s) 75, 88
XspI CTAG 3 cut(s) 515, 1121, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.