MD12G1067800.v1.1
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0001342
Physical Location & Seq
Reverse (-)
8014030 .. 8014526
497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1067800.v1.1.491

Sequence Viewer

Length: 360 bp
ATGGACGGCATGAACGACCATGAGAGAGCCATTGCTTGTCCTTGGGCCATTGAAGCCCTCGCTAGCTTCAAACAAGTCGATGCATCGCTTTTACATGATTTAATTGCGATGGCTCCAACATTACCTGAAGATACTGGGAACAATGCAAAGGAAATGGTTGCTTTGAAATGTTTGGAGAGTTTGTTTAGTCCTTGTAATGTGATGAGCAGTGATGTTCCTTCTTCTCAGCATTCGAAAATCGGCTTTAATTTATCGGAAACTTGTGAAAATGTTCTCAAACGCATTGTATCCATATTCCTTTGGTATTCGTACCCTTTAGGCTTGAGTCTCGTTTTTGCTCACTCCCTAGCCTTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

120

Amino Acids

13.03

Weight (kDa)

4.96

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 3 cut(s) 53, 70, 166
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 332
AoxI GGCC 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 45
AsuII TTCGAA 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 22
BciVI GTATCC 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 2 cut(s) 63, 347
BfuI GTATCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 114
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 70, 92
BmtI GCTAGC 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 41, 351
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 41, 351
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 139
BshFI GGCC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 233
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 114
BspOI GCTAGC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 41, 351
BssT1I CCWWGG 2 cut(s) 41, 351
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 332
BstMWI GCNNNNNNNGC 1 cut(s) 53
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 47
BtgZI GCGATG 2 cut(s) 69, 122
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 10, 20, 95
CviJI RGCY 8 cut(s) 29, 47, 56, 66, 113, 243, 321, 350
CviKI_1 RGCY 8 cut(s) 29, 47, 56, 66, 113, 243, 321, 350
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 41, 351
Eco57I CTGAAG 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 41, 351
EcoT22I ATGCAT 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 41, 351
FaeI CATG 3 cut(s) 13, 23, 98
FaiI YATR 4 cut(s) 11, 21, 96, 293
FatI CATG 3 cut(s) 9, 19, 94
FspBI CTAG 2 cut(s) 63, 347
HaeIII GGCC 1 cut(s) 47
Hin1II CATG 3 cut(s) 13, 23, 98
HinfI GANTC 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 83, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 3 cut(s) 13, 23, 98
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 2 cut(s) 120, 138
LweI GCATC 2 cut(s) 70, 92
MaeI CTAG 2 cut(s) 63, 347
MboII GAAGA 2 cut(s) 140, 213
MluCI AATT 2 cut(s) 102, 247
MlyI GAGTC 1 cut(s) 334
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 2 cut(s) 101, 246
Mva1269I GAATGC 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 53
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 3 cut(s) 13, 23, 98
NlaIV GGNNCC 1 cut(s) 114
NsiI ATGCAT 1 cut(s) 85
NspV TTCGAA 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 270
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 45
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 101, 246
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 1 cut(s) 334
SetI ASST 2 cut(s) 68, 127
SfaNI GCATC 2 cut(s) 70, 92
SfuI TTCGAA 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 2 cut(s) 102, 247
SspMI CTAG 2 cut(s) 63, 347
StyI CCWWGG 2 cut(s) 41, 351
TaqI TCGA 2 cut(s) 78, 233
TasI AATT 2 cut(s) 102, 247
Tru1I TTAA 2 cut(s) 101, 246
Tru9I TTAA 2 cut(s) 101, 246
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 2 cut(s) 63, 347
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.