Prupe.5G223300_v2.0.a1
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0001342
Physical Location & Seq
Forward (+)
17326537 .. 17328605
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G223300.1

Sequence Viewer

Length: 1548 bp
ATGGACGAGATGACAAAGGGAGAGGCAGCCATTGCTTGGGGTTGGCTCCTGGAAGCTTTGGCAGGCTTCAAAGAAGTTGGGGTATCGCTTTTACATGATTTGATTAAGATGGCTCCGGATTTGCCTGAGGATTTGGAAACGAAAGTAAACGAAAGGGTTGCTTTGAGATGTTTGGAGGATTTATTTTCCCCTGGTGATGTTCCCGCTCCTCTTCCCTCTACTTCTACTTCTACTTCTACTCACCATTCAAAAGTCACCTTTGATTTATCGGAAAGTTGCGACGATGTTCTCCAACGCATCGTGAACGAGACACCAGAATCGGATTTGAAAATGGGTGGCCCTGGGCTGTTGAAATGGGATGTTCAGCCCTTTATCGTGCACAAACGAGCTTCTATGCCTAAATGTGCTTTGAGCCAGCTCAAAGATTCAATTCTTGACGGTACACATCCATATGCTGATTTCTTGATTAAAAAGAGCGGCTTAACATCTACCAGGGACGGTGGTAATGATAGACTTCCTGTCAGTGATAGTAGTAGGAGGAGAAGGTTCAATGGGAGCTGCTCTAATGCTAAAAACACGAGCGTAGAAGGAAATGATGCAAATGTATTGCTTTCCAAGAGGGCTATGATTGCCTCAAATTCTGAAAATTTGGCAGATGAAGACCATGGTGGAGTAAATGGCTCTGATGATTTGCGTAGAAATGTCAAGAAGGTGAAGTTGGATGCCTCTTATGTCTCACAGTCTGTTGAACACAACACGATTTCTTTGCCTCAGAAAGAACGTTTGGATGATTCATCTGAAAGAGATGGTCCAATTTTCGAGAGAGAAAGATGTGTTTTGGCAGAATATCGCATGAGAATGTTGGAGGAAAGCAAGGTCTTAGAGGATGATCATGATAATTATACTTGCTCAAAGCGGTCTGGACAGAGCACTGAGATTGCAATCCATAAGAGTCAGTTAGAAATTCCTTGTACTGCTGAAGGCAAAGAGGATAGTGAGCATTGTCCTGAACCAACAACATCAGGTGTTGTTCCTCCGGATGTAACCCAGCATAAAGATCCTGAGCATGGTTCTCATGTTAAAGTAGCACATGCTGCATCTGCAGATGGATCCCAGCAGAAGACCGTTGCTGATCGAGCCAAAGATCCCATGGATTGCCATTGCGAGTCAAGTGATAGCTATGGGTTTAATAATGAGAAGATTGATGTTGCCATGAAGAAGCAAGATTTCTTGACCTCACAATGCACGATAAATCGTGCTTACTCAGACACAATTGATTGGACAGAGGAAAATTTTTGTATGAAGTGTAATGAAGGTGGTCAGTTGTTGATATGCAGTACCAGTGATTGCCCTTTGGTATATCATGAAAAGTGTCTTGGTTCTGAGTTCATTTGTTATAAGAAAGGTAACTTCTACTGCCCCTTCTGTTCGCATTCTCTTGCTCTTAAGGAGTACCTAGAAGCTAAGAAGAAAGCTTTTCTCTTAAGGAAAGATCTAGATGCATTTATGTGTAACGTTTCGGAACATCAGCCAGCAAAGTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

516

Amino Acids

57.2

Weight (kDa)

5.31

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1398
AccB7I CCANNNNNTGG 1 cut(s) 36
AccBSI CCGCTC 2 cut(s) 206, 477
AccIII TCCGGA 2 cut(s) 115, 1036
AciI CCGC 3 cut(s) 204, 477, 916
AclI AACGTT 2 cut(s) 781, 1515
AclWI GGATC 4 cut(s) 1052, 1104, 1117, 1139
AcsI RAATTY 4 cut(s) 637, 646, 963, 1291
AcuI CTGAAG 1 cut(s) 999
AfaI GTAC 4 cut(s) 442, 973, 1339, 1454
AfiI CCNNNNNNNGG 2 cut(s) 36, 1067
AflII CTTAAG 2 cut(s) 1445, 1483
AgsI TTSAA 7 cut(s) 70, 249, 328, 352, 429, 550, 749
AhdI GACNNNNNGTC 1 cut(s) 518
AjnI CCWGG 4 cut(s) 48, 190, 340, 491
AjuI GAANNNNNNNTTGG 6 cut(s) 701, 733, 767, 799, 1359, 1391
AluBI AGCT 7 cut(s) 56, 389, 418, 558, 1179, 1463, 1475
AluI AGCT 7 cut(s) 56, 389, 418, 558, 1179, 1463, 1475
Alw21I GWGCWC 2 cut(s) 381, 932
Alw26I GTCTC 2 cut(s) 302, 739
Alw44I GTGCAC 1 cut(s) 377
AlwI GGATC 4 cut(s) 1052, 1104, 1117, 1139
Aor13HI TCCGGA 2 cut(s) 115, 1036
AoxI GGCC 1 cut(s) 337
ApaLI GTGCAC 1 cut(s) 377
ApeKI GCWGC 3 cut(s) 26, 558, 1094
ApoI RAATTY 4 cut(s) 637, 646, 963, 1291
AspS9I GGNCC 2 cut(s) 338, 809
AsuHPI GGTGA 4 cut(s) 206, 233, 247, 724
AvaII GGWCC 1 cut(s) 809
AxyI CCTNAGG 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 381
BamHI GGATCC 1 cut(s) 1109
BauI CACGAG 1 cut(s) 577
BbsI GAAGAC 2 cut(s) 666, 1127
Bbv12I GWGCWC 2 cut(s) 381, 932
BbvI GCAGC 3 cut(s) 38, 545, 1081
BccI CCATC 3 cut(s) 103, 800, 1100
BcgI CGANNNNNNTGC 4 cut(s) 140, 174, 748, 782
BciT130I CCWGG 4 cut(s) 50, 192, 342, 493
BclI TGATCA 1 cut(s) 889
BcoDI GTCTC 2 cut(s) 302, 739
BfaI CTAG 2 cut(s) 1457, 1496
BfmI CTRYAG 1 cut(s) 1101
BfrI CTTAAG 2 cut(s) 1445, 1483
BglII AGATCT 1 cut(s) 1492
BisI GCNGC 4 cut(s) 27, 478, 559, 1095
BlsI GCNGC 4 cut(s) 28, 479, 560, 1096
Bme1390I CCNGG 4 cut(s) 50, 192, 342, 493
Bme18I GGWCC 1 cut(s) 809
BmeRI GACNNNNNGTC 1 cut(s) 518
BmgT120I GGNCC 2 cut(s) 338, 809
BmiI GGNNCC 3 cut(s) 47, 114, 1111
BmrFI CCNGG 4 cut(s) 50, 192, 342, 493
BmsI GCATC 5 cut(s) 306, 586, 712, 1106, 1489
BpiI GAAGAC 2 cut(s) 666, 1127
Bpu10I CCTNAGC 1 cut(s) 1062
BsaBI GATNNNNATC 1 cut(s) 941
BsaJI CCNNGG 6 cut(s) 190, 340, 341, 492, 664, 1149
BsaWI WCCGGW 2 cut(s) 115, 1036
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 1067
Bse1I ACTGG 1 cut(s) 1341
Bse21I CCTNAGG 1 cut(s) 126
Bse3DI GCAATG 2 cut(s) 30, 1159
Bse8I GATNNNNATC 1 cut(s) 941
BseAI TCCGGA 2 cut(s) 115, 1036
BseBI CCWGG 4 cut(s) 50, 192, 342, 493
BseDI CCNNGG 6 cut(s) 190, 340, 341, 492, 664, 1149
BseGI GGATG 6 cut(s) 364, 445, 727, 793, 892, 1045
BseJI GATNNNNATC 1 cut(s) 941
BseLI CCNNNNNNNGG 2 cut(s) 36, 1067
BseMI GCAATG 2 cut(s) 30, 1159
BseMII CTCAG 6 cut(s) 117, 785, 924, 1053, 1278, 1374
BseNI ACTGG 1 cut(s) 1341
BseRI GAGGAG 2 cut(s) 198, 553
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 3 cut(s) 38, 545, 1081
BseYI CCCAGC 2 cut(s) 1047, 1113
BshFI GGCC 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 381, 932
BsiSI CCGG 2 cut(s) 116, 1037
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 36, 1067
BsmAI GTCTC 2 cut(s) 302, 739
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 1432
BsnI GGCC 1 cut(s) 339
Bsp1286I GDGCHC 2 cut(s) 381, 932
Bsp13I TCCGGA 2 cut(s) 115, 1036
Bsp143I GATC 6 cut(s) 889, 1057, 1109, 1132, 1144, 1492
Bsp19I CCATGG 2 cut(s) 664, 1149
BspACI CCGC 3 cut(s) 204, 477, 916
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 6 cut(s) 118, 784, 925, 1054, 1277, 1375
BspEI TCCGGA 2 cut(s) 115, 1036
BspHI TCATGA 2 cut(s) 892, 1363
BspLI GGNNCC 3 cut(s) 47, 114, 1111
BspMAI CTGCAG 1 cut(s) 1105
BspPI GGATC 4 cut(s) 1052, 1104, 1117, 1139
BspTI CTTAAG 2 cut(s) 1445, 1483
BsrBI CCGCTC 2 cut(s) 206, 477
BsrDI GCAATG 2 cut(s) 30, 1159
BsrI ACTGG 1 cut(s) 1341
BssECI CCNNGG 6 cut(s) 190, 340, 341, 492, 664, 1149
BssMI GATC 6 cut(s) 889, 1057, 1109, 1132, 1144, 1492
BssSI CACGAG 1 cut(s) 577
BssT1I CCWWGG 2 cut(s) 664, 1149
Bst2BI CACGAG 1 cut(s) 577
Bst2UI CCWGG 4 cut(s) 50, 192, 342, 493
Bst4CI ACNGT 4 cut(s) 440, 500, 741, 1126
Bst6I CTCTTC 1 cut(s) 216
BstAFI CTTAAG 2 cut(s) 1445, 1483
BstAPI GCANNNNNTGC 2 cut(s) 32, 1094
BstC8I GCNNGC 3 cut(s) 64, 416, 1533
BstDEI CTNAG 8 cut(s) 126, 771, 880, 933, 1062, 1264, 1383, 1464
BstDSI CCRYGG 2 cut(s) 664, 1149
BstF5I GGATG 6 cut(s) 364, 445, 727, 793, 892, 1045
BstKTI GATC 6 cut(s) 892, 1060, 1112, 1135, 1147, 1495
BstMAI GTCTC 2 cut(s) 302, 739
BstMBI GATC 6 cut(s) 889, 1057, 1109, 1132, 1144, 1492
BstMWI GCNNNNNNNGC 5 cut(s) 32, 629, 1094, 1100, 1136
BstNI CCWGG 4 cut(s) 50, 192, 342, 493
BstNSI RCATGY 1 cut(s) 1094
BstSCI CCNGG 4 cut(s) 48, 190, 340, 491
BstSFI CTRYAG 1 cut(s) 1101
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 38, 545, 1081
BstV2I GAAGAC 2 cut(s) 666, 1127
BstX2I RGATCY 4 cut(s) 1057, 1109, 1144, 1492
BstYI RGATCY 4 cut(s) 1057, 1109, 1144, 1492
Bsu36I CCTNAGG 1 cut(s) 126
BsuRI GGCC 1 cut(s) 339
BtgI CCRYGG 2 cut(s) 664, 1149
BtsCI GGATG 6 cut(s) 364, 445, 727, 793, 892, 1045
BtsIMutI CAGTG 3 cut(s) 529, 930, 1348
Cac8I GCNNGC 3 cut(s) 64, 416, 1533
CciI TCATGA 2 cut(s) 892, 1363
Cfr13I GGNCC 2 cut(s) 338, 809
Csp6I GTAC 4 cut(s) 441, 972, 1338, 1453
CviQI GTAC 4 cut(s) 441, 972, 1338, 1453
DdeI CTNAG 8 cut(s) 126, 771, 880, 933, 1062, 1264, 1383, 1464
DpnI GATC 6 cut(s) 891, 1059, 1111, 1134, 1146, 1494
DpnII GATC 6 cut(s) 889, 1057, 1109, 1132, 1144, 1492
DriI GACNNNNNGTC 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 216
Eam1105I GACNNNNNGTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 664, 1149
Eco47I GGWCC 1 cut(s) 809
Eco57I CTGAAG 1 cut(s) 999
Eco81I CCTNAGG 1 cut(s) 126
EcoRII CCWGG 4 cut(s) 48, 190, 340, 491
EcoT14I CCWWGG 2 cut(s) 664, 1149
EcoT22I ATGCAT 1 cut(s) 1504
ErhI CCWWGG 2 cut(s) 664, 1149
FalI AAGNNNNNCTT 4 cut(s) 145, 177, 464, 496
FaqI GGGAC 1 cut(s) 509
FauI CCCGC 1 cut(s) 211
FauNDI CATATG 1 cut(s) 451
FbaI TGATCA 1 cut(s) 889
Fnu4HI GCNGC 4 cut(s) 27, 478, 559, 1095
FokI GGATG 6 cut(s) 371, 432, 734, 800, 899, 1052
Fsp4HI GCNGC 4 cut(s) 27, 478, 559, 1095
FspBI CTAG 2 cut(s) 1457, 1496
GluI GCNGC 4 cut(s) 27, 478, 559, 1095
GsaI CCCAGC 2 cut(s) 1051, 1117
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 116, 1037
HindIII AAGCTT 2 cut(s) 54, 1473
HinfI GANTC 5 cut(s) 317, 425, 791, 952, 1166
HpaII CCGG 2 cut(s) 116, 1037
HphI GGTGA 4 cut(s) 206, 233, 247, 724
Hpy166II GTNNAC 4 cut(s) 148, 304, 379, 443
Hpy188I TCNGA 9 cut(s) 271, 322, 643, 685, 774, 799, 1267, 1384, 1522
Hpy8I GTNNAC 4 cut(s) 148, 304, 379, 443
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 6 cut(s) 537, 581, 703, 974, 1307, 1432
HpyCH4III ACNGT 4 cut(s) 440, 500, 741, 1126
HpyCH4IV ACGT 2 cut(s) 781, 1515
HpyCH4V TGCA 8 cut(s) 379, 599, 941, 1097, 1103, 1245, 1335, 1502
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 629, 1094, 1100, 1136
HpyF3I CTNAG 8 cut(s) 126, 771, 880, 933, 1062, 1264, 1383, 1464
HpySE526I ACGT 2 cut(s) 781, 1515
Kpn2I TCCGGA 2 cut(s) 115, 1036
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 6 cut(s) 889, 1057, 1109, 1132, 1144, 1492
LmnI GCTCC 4 cut(s) 51, 118, 211, 555
Lsp1109I GCAGC 3 cut(s) 38, 545, 1081
LweI GCATC 5 cut(s) 306, 586, 712, 1106, 1489
MaeI CTAG 2 cut(s) 1457, 1496
MaeII ACGT 2 cut(s) 781, 1515
MaeIII GTNAC 4 cut(s) 253, 1042, 1406, 1511
MalI GATC 6 cut(s) 891, 1059, 1111, 1134, 1146, 1494
MbiI CCGCTC 2 cut(s) 206, 477
MboI GATC 6 cut(s) 889, 1057, 1109, 1132, 1144, 1492
MboII GAAGA 6 cut(s) 203, 671, 1132, 1210, 1228, 1480
MfeI CAATTG 1 cut(s) 1272
MflI RGATCY 4 cut(s) 1057, 1109, 1144, 1492
MhlI GDGCHC 2 cut(s) 381, 932
MluCI AATT 8 cut(s) 429, 637, 646, 813, 898, 963, 1272, 1291
MlyI GAGTC 2 cut(s) 961, 1175
MmeI TCCRAC 3 cut(s) 316, 699, 843
Mph1103I ATGCAT 1 cut(s) 1504
MroI TCCGGA 2 cut(s) 115, 1036
MseI TTAA 7 cut(s) 105, 468, 482, 1080, 1188, 1446, 1484
MslI CAYNNNNRTG 3 cut(s) 450, 857, 1507
MspCI CTTAAG 2 cut(s) 1445, 1483
MspI CCGG 2 cut(s) 116, 1037
MspR9I CCNGG 4 cut(s) 50, 192, 342, 493
MunI CAATTG 1 cut(s) 1272
Mva1269I GAATGC 1 cut(s) 1432
MvaI CCWGG 4 cut(s) 50, 192, 342, 493
MwoI GCNNNNNNNGC 5 cut(s) 32, 629, 1094, 1100, 1136
NcoI CCATGG 2 cut(s) 664, 1149
NdeI CATATG 1 cut(s) 451
NdeII GATC 6 cut(s) 889, 1057, 1109, 1132, 1144, 1492
NlaIV GGNNCC 3 cut(s) 47, 114, 1111
NmuCI GTSAC 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 1504
NspI RCATGY 1 cut(s) 1094
PagI TCATGA 2 cut(s) 892, 1363
PasI CCCWGGG 1 cut(s) 341
PctI GAATGC 1 cut(s) 1432
PfeI GAWTC 3 cut(s) 317, 425, 791
PflMI CCANNNNNTGG 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 4 cut(s) 28, 479, 560, 1096
PleI GAGTC 2 cut(s) 960, 1174
PpsI GAGTC 2 cut(s) 960, 1174
PsiI TTATAA 1 cut(s) 1398
Psp1406I AACGTT 2 cut(s) 781, 1515
Psp6I CCWGG 4 cut(s) 48, 190, 340, 491
PspFI CCCAGC 2 cut(s) 1047, 1113
PspGI CCWGG 4 cut(s) 48, 190, 340, 491
PspN4I GGNNCC 3 cut(s) 47, 114, 1111
PspPI GGNCC 2 cut(s) 338, 809
PstI CTGCAG 1 cut(s) 1105
PsuI RGATCY 4 cut(s) 1057, 1109, 1144, 1492
RsaI GTAC 4 cut(s) 442, 973, 1339, 1454
RsaNI GTAC 4 cut(s) 441, 972, 1338, 1453
RseI CAYNNNNRTG 3 cut(s) 450, 857, 1507
SaqAI TTAA 7 cut(s) 105, 468, 482, 1080, 1188, 1446, 1484
SatI GCNGC 4 cut(s) 27, 478, 559, 1095
Sau3AI GATC 6 cut(s) 889, 1057, 1109, 1132, 1144, 1492
Sau96I GGNCC 2 cut(s) 338, 809
SchI GAGTC 2 cut(s) 961, 1175
ScrFI CCNGG 4 cut(s) 50, 192, 342, 493
SduI GDGCHC 2 cut(s) 381, 932
SfaNI GCATC 5 cut(s) 306, 586, 712, 1106, 1489
SfcI CTRYAG 1 cut(s) 1101
SinI GGWCC 1 cut(s) 809
SmiMI CAYNNNNRTG 3 cut(s) 450, 857, 1507
SmlI CTYRAG 2 cut(s) 1445, 1483
SmoI CTYRAG 2 cut(s) 1445, 1483
Sse9I AATT 8 cut(s) 429, 637, 646, 813, 898, 963, 1272, 1291
SsiI CCGC 3 cut(s) 204, 477, 916
SspMI CTAG 2 cut(s) 1457, 1496
StyD4I CCNGG 4 cut(s) 48, 190, 340, 491
StyI CCWWGG 2 cut(s) 664, 1149
TaaI ACNGT 4 cut(s) 440, 500, 741, 1126
TaiI ACGT 2 cut(s) 784, 1518
TaqI TCGA 2 cut(s) 819, 1135
TasI AATT 8 cut(s) 429, 637, 646, 813, 898, 963, 1272, 1291
TatI WGTACW 1 cut(s) 971
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 3 cut(s) 317, 425, 791
Tru1I TTAA 7 cut(s) 105, 468, 482, 1080, 1188, 1446, 1484
Tru9I TTAA 7 cut(s) 105, 468, 482, 1080, 1188, 1446, 1484
TscAI CASTG 3 cut(s) 529, 937, 1348
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 26, 558, 1094
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 7 cut(s) 672, 783, 1229, 1316, 1326, 1378, 1380
TspRI CASTG 3 cut(s) 529, 937, 1348
Van91I CCANNNNNTGG 1 cut(s) 36
Vha464I CTTAAG 2 cut(s) 1445, 1483
VneI GTGCAC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 4 cut(s) 637, 646, 963, 1291
XbaI TCTAGA 1 cut(s) 1495
XceI RCATGY 1 cut(s) 1094
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XspI CTAG 2 cut(s) 1457, 1496
Zsp2I ATGCAT 1 cut(s) 1504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.