Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001342

Physical Location & Seq

Genomic Coordinates Forward (+)

13123887 .. 13124667

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG168100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGAGGAGGAGGGAAGTGGAAATGGGATATTGAGCCCTTTATTGAGCACAAAAGAGCTTCTATGCCGACATGTGCTTTGAACAAGCTTAAAGATTCTGTTGTTGATTGTAGTCATCCATATGCTGAATTGTTTGGAAGAAAGAGTGGATTAGCATTTGTTAGGGTTGCTGGGAGGGATGGTATTTTGGGGCTTAATGGTGGCTGCTCTAATGCTCCAAACATTGGCGTTGAAGAAGCGCGGAATGATGAAAGTGCATTGCCTTCCAAGAGGGGTAAAAATGCCTCAGAAACTGAAAAAGTGGCGGCGGCGGCGACCTTGACGGCGGTTCTAGCAGTGGATGTGGAGGACTTGGCCGGCAGTGGGAAGAGAAGAACGGGGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

128

Amino Acids

13.43

Weight (kDa)

8.49

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001342)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11840 FvH4_5g11840 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300
malus_domestica	MD06G1218200.v1.1 MD12G1067700.v1.1 MD12G1067800.v1.1 MD14G1067900.v1.1
prunus_persica	Prupe.5G223300_v2.0.a1 Prupe.7G066400_v2.0.a1 Prupe.7G066400_v2.0.a1 Prupe.7G066400_v2.0.a1
pyrus_communis	pycom06g19440
rosa_chinensis	RchiOBHm_Chr3g0481261 RchiOBHm_Chr5g0000181
rosa_laevigata	RLG00000023408 RLG00000030848
rosa_multiflora	Rmu_co8437141.1_g000001 Rmu_ssc0000243.1_g000012
rosa_roxburghii	Rroxscaffold_1G00075910 Rroxscaffold_6G00400560
rosa_rugosa	Rorug03G0190600 Rorug03G0190700 Rorug03G0190800 Rorug04G0382200 Rorug04G0382300.1 Rorug04G0382400
rosa_samantha	Rh3AG241600 Rh3BG276900 Rh3CG272200 Rh3DG268600 Rh5AG001300 Rh5BG002700 Rh5CG001400 Rh5DG001400 Rh7BG168100
rosa_wichuraiana	Rw3G021580 Rw5G000170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccII	CGCG	1 cut(s)	241
AciI	CCGC	5 cut(s)	241, 305, 308, 311, 326
AcoI	YGGCCR	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	224, 363
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	82, 233
AluBI	AGCT	2 cut(s)	59, 88
AluI	AGCT	2 cut(s)	59, 88
Alw21I	GWGCWC	1 cut(s)	51
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspLEI	GCGC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	339
BfaI	CTAG	2 cut(s)	332, 385
BisI	GCNGC	4 cut(s)	205, 306, 309, 312
BlsI	GCNGC	4 cut(s)	206, 307, 310, 313
Bme18I	GGWCC	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 363
Bse118I	RCCGGY	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	257
BseGI	GGATG	3 cut(s)	115, 184, 346
BseLI	CCNNNNNNNGG	2 cut(s)	224, 363
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	21, 24
BseXI	GCAGC	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	224, 363
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	39, 51
BspACI	CCGC	5 cut(s)	241, 305, 308, 311, 326
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	286
BstF5I	GGATG	3 cut(s)	115, 184, 346
BstFNI	CGCG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 332
BstNSI	RCATGY	1 cut(s)	75
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	115, 184, 346
BtsI	GCAGTG	2 cut(s)	342, 367
BtsIMutI	CAGTG	2 cut(s)	342, 367
Cac8I	GCNNGC	1 cut(s)	358
CaiI	CAGNNNCTG	1 cut(s)	293
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	381
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	6 cut(s)	37, 59, 88, 193, 204, 356
CviKI_1	RGCY	6 cut(s)	37, 59, 88, 193, 204, 356
DdeI	CTNAG	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	1 cut(s)	75
FaiI	YATR	4 cut(s)	65, 73, 121, 123
FatI	CATG	1 cut(s)	71
FauNDI	CATATG	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	205, 306, 309, 312
FokI	GGATG	3 cut(s)	102, 191, 353
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	205, 306, 309, 312
FspBI	CTAG	2 cut(s)	332, 385
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	4 cut(s)	205, 306, 309, 312
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	357
Hpy188I	TCNGA	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 332
HpyF3I	CTNAG	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	75
HspAI	GCGC	1 cut(s)	239
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	2 cut(s)	156, 370
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	332, 385
MboII	GAAGA	4 cut(s)	150, 245, 379, 384
MhlI	GDGCHC	2 cut(s)	39, 51
MluCI	AATT	1 cut(s)	128
MnlI	CCTC	5 cut(s)	5, 168, 264, 295, 340
MroNI	GCCGGC	1 cut(s)	356
MseI	TTAA	2 cut(s)	90, 195
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	311, 332
NaeI	GCCGGC	1 cut(s)	358
NdeI	CATATG	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	75
PciI	ACATGT	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	206, 307, 310, 313
PpuMI	RGGWCCY	1 cut(s)	381
PscI	ACATGT	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	381
PspPPI	RGGWCCY	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	90, 195
SatI	GCNGC	4 cut(s)	205, 306, 309, 312
Sau96I	GGNCC	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	39, 51
SetI	ASST	4 cut(s)	61, 90, 320, 386
SgeI	CNNG	9 cut(s)	84, 97, 183, 252, 280, 331, 344, 364, 369
SinI	GGWCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	128
SsiI	CCGC	5 cut(s)	241, 305, 308, 311, 326
SspMI	CTAG	2 cut(s)	332, 385
TasI	AATT	1 cut(s)	128
TauI	GCSGC	3 cut(s)	308, 311, 314
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	90, 195
Tru9I	TTAA	2 cut(s)	90, 195
TscAI	CASTG	2 cut(s)	342, 367
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	342, 367
Van91I	CCANNNNNTGG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	381
XceI	RCATGY	1 cut(s)	75
XspI	CTAG	2 cut(s)	332, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.