Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001342

Physical Location & Seq

Genomic Coordinates Reverse (-)

8006684 .. 8007990

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1067700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGTCAGAGATCTCGACTGCTAGTGTTGAATTTCATGACAAAGAAGATTGATGTTGTCATGAAGAAGCATGCTTTGTTGAGCTCTCAATCCACATCCAGTCAATATTCCTCAGAGACAACCAAAAATCTTTGTAAGAAGCCTAATGAAGGCGGTCCGTTGATTTGTAATACCGGTAATTGCTCTGTTGTGGTTCATGAAAACTGGCTGAGTTCCTCAGCCATTTTATATAAGAATGATAACTTTAAATGCCCCTTCTGTTCATATACTCTTGATCTTACTGAATACCTTGATTCTAAGAAGAGAGCCTCAATGTTAAAGAAAGACCTAGACGCATTTATTCATAGTCTGGAACATCAGCCAGAGGAATGCCTTGGTAGCCAGCACAACAAAGAGAATATTTGCATGAGAAAATTTCATGAGGATCTTAACGCAAAAACGAAAGGTCATCAGAATGGGCATTTGGGAAAGAGTGTAGAACATCTTGAAAAGCAATGTGAAGAACGTGCAAATGAAATCAATGACCTTCAATTGCAGAATATTACAGGTACTGAGCAACAAGTAGCACCTTCTGGATCTTGTATTCGTTTCAATTCAGAGTGTAGAGATGAAAGTACGTGCATATCTGTGGTAGGGCTTGATGGATGTCAGAACCAAGTACCAGCTAAAGGTGATACTTTGTCCAGCAAAAGTGCAGTAAGCCTCCTTGCTGACAAAAGACAAGCTGTAGTAATTGAGCAGGAAGATCTGCAGCGGCACATTACCAATGCACAAGAGGTACAAGGCCATGCACTTAATATTGATTCCGAGCAAGCTGGTGCTCGAATGTCTAGCACTTCCAATTACAGCGCAAGACTCCGGACAAAAAATCCCTACACATCCCCGACCATCTCTCAGTTAAGGCAGATAAAAGTTCTGTGGAGCGTTGAGGAGGAAGAATTGCTCAAGGTTCCTGGGTTTCTTTCTAATTTACCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

327

Amino Acids

36.44

Weight (kDa)

6.83

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001342)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11840 FvH4_5g11840 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300 FvH4_6g23300
malus_domestica	MD06G1218200.v1.1 MD12G1067700.v1.1 MD12G1067800.v1.1 MD14G1067900.v1.1
prunus_persica	Prupe.5G223300_v2.0.a1 Prupe.7G066400_v2.0.a1 Prupe.7G066400_v2.0.a1 Prupe.7G066400_v2.0.a1
pyrus_communis	pycom06g19440
rosa_chinensis	RchiOBHm_Chr3g0481261 RchiOBHm_Chr5g0000181
rosa_laevigata	RLG00000023408 RLG00000030848
rosa_multiflora	Rmu_co8437141.1_g000001 Rmu_ssc0000243.1_g000012
rosa_roxburghii	Rroxscaffold_1G00075910 Rroxscaffold_6G00400560
rosa_rugosa	Rorug03G0190600 Rorug03G0190700 Rorug03G0190800 Rorug04G0382200 Rorug04G0382300.1 Rorug04G0382400
rosa_samantha	Rh3AG241600 Rh3BG276900 Rh3CG272200 Rh3DG268600 Rh5AG001300 Rh5BG002700 Rh5CG001400 Rh5DG001400 Rh7BG168100
rosa_wichuraiana	Rw3G021580 Rw5G000170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	858
AciI	CCGC	2 cut(s)	153, 754
AclWI	GGATC	2 cut(s)	432, 583
AcsI	RAATTY	2 cut(s)	31, 413
AfaI	GTAC	4 cut(s)	550, 616, 660, 780
AfiI	CCNNNNNNNGG	2 cut(s)	149, 668
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	31, 488, 530, 592
AjnI	CCWGG	1 cut(s)	952
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	4 cut(s)	84, 665, 725, 815
AluI	AGCT	4 cut(s)	84, 665, 725, 815
Alw21I	GWGCWC	2 cut(s)	86, 823
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	432, 583
AlwNI	CAGNNNCTG	1 cut(s)	551
Aor13HI	TCCGGA	1 cut(s)	858
AoxI	GGCC	1 cut(s)	784
ApeKI	GCWGC	1 cut(s)	751
ApoI	RAATTY	2 cut(s)	31, 413
AsiGI	ACCGGT	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	851
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	86, 823
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	763
BccI	CCATC	2 cut(s)	635, 896
BciT130I	CCWGG	1 cut(s)	954
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	3 cut(s)	23, 329, 831
BfmI	CTRYAG	2 cut(s)	726, 749
BglII	AGATCT	2 cut(s)	11, 745
BisI	GCNGC	2 cut(s)	752, 755
BlsI	GCNGC	2 cut(s)	753, 756
Bme1390I	CCNGG	1 cut(s)	954
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	951
BmrFI	CCNGG	1 cut(s)	954
Bpu10I	CCTNAGC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	929
BsaAI	YACGTR	1 cut(s)	618
BsaJI	CCNNGG	2 cut(s)	373, 953
BsaWI	WCCGGW	2 cut(s)	173, 858
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 668
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	99, 209
Bse3DI	GCAATG	1 cut(s)	500
BseAI	TCCGGA	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	954
BseDI	CCNNGG	2 cut(s)	373, 953
BseGI	GGATG	3 cut(s)	95, 650, 878
BseLI	CCNNNNNNNGG	2 cut(s)	149, 668
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	5 cut(s)	126, 200, 231, 543, 908
BseNI	ACTGG	2 cut(s)	99, 209
BseRI	GAGGAG	1 cut(s)	944
BseXI	GCAGC	1 cut(s)	763
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	1 cut(s)	786
BshTI	ACCGGT	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	86, 823
BsiSI	CCGG	2 cut(s)	174, 859
BslI	CCNNNNNNNGG	2 cut(s)	149, 668
BsmAI	GTCTC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	786
Bsp1286I	GDGCHC	2 cut(s)	86, 823
Bsp13I	TCCGGA	1 cut(s)	858
Bsp143I	GATC	5 cut(s)	11, 274, 424, 575, 745
BspACI	CCGC	2 cut(s)	153, 754
BspANI	GGCC	1 cut(s)	786
BspCNI	CTCAG	5 cut(s)	125, 201, 230, 544, 907
BspEI	TCCGGA	1 cut(s)	858
BspHI	TCATGA	4 cut(s)	36, 60, 196, 418
BspLI	GGNNCC	1 cut(s)	951
BspMAI	CTGCAG	1 cut(s)	753
BspPI	GGATC	2 cut(s)	432, 583
BsrDI	GCAATG	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	99, 209
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	2 cut(s)	373, 953
BssMI	GATC	5 cut(s)	11, 274, 424, 575, 745
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	954
Bst6I	CTCTTC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	618
BstC8I	GCNNGC	3 cut(s)	72, 383, 813
BstDEI	CTNAG	6 cut(s)	112, 209, 217, 297, 552, 894
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	95, 650, 878
BstHHI	GCGC	1 cut(s)	851
BstKTI	GATC	5 cut(s)	14, 277, 427, 578, 748
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	11, 274, 424, 575, 745
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	954
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	952
BstSFI	CTRYAG	2 cut(s)	726, 749
BstV1I	GCAGC	1 cut(s)	763
BstX2I	RGATCY	4 cut(s)	11, 424, 575, 745
BstYI	RGATCY	4 cut(s)	11, 424, 575, 745
BsuRI	GGCC	1 cut(s)	786
BtsCI	GGATG	3 cut(s)	95, 650, 878
Cac8I	GCNNGC	3 cut(s)	72, 383, 813
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	4 cut(s)	36, 60, 196, 418
CfoI	GCGC	1 cut(s)	851
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	155
CpoI	CGGWCCG	1 cut(s)	155
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	4 cut(s)	549, 615, 659, 779
CspAI	ACCGGT	1 cut(s)	173
CspI	CGGWCCG	1 cut(s)	155
CviAII	CATG	7 cut(s)	37, 61, 71, 197, 406, 419, 788
CviQI	GTAC	4 cut(s)	549, 615, 659, 779
DdeI	CTNAG	6 cut(s)	112, 209, 217, 297, 552, 894
DpnI	GATC	5 cut(s)	13, 276, 426, 577, 747
DpnII	GATC	5 cut(s)	11, 274, 424, 575, 745
DraI	TTTAAA	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	952
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	7 cut(s)	40, 64, 74, 200, 409, 422, 791
FatI	CATG	7 cut(s)	36, 60, 70, 196, 405, 418, 787
Fnu4HI	GCNGC	2 cut(s)	752, 755
FokI	GGATG	3 cut(s)	82, 657, 865
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	752, 755
FspBI	CTAG	3 cut(s)	23, 329, 831
GlaI	GCGC	1 cut(s)	850
GluI	GCNGC	2 cut(s)	752, 755
HaeIII	GGCC	1 cut(s)	786
HapII	CCGG	2 cut(s)	174, 859
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	851
Hin1II	CATG	7 cut(s)	40, 64, 74, 200, 409, 422, 791
Hin6I	GCGC	1 cut(s)	849
HinP1I	GCGC	1 cut(s)	849
HinfI	GANTC	4 cut(s)	4, 293, 803, 855
HpaII	CCGG	2 cut(s)	174, 859
HphI	GGTGA	1 cut(s)	683
Hpy188I	TCNGA	6 cut(s)	9, 115, 453, 598, 651, 808
HpyAV	CCTTC	4 cut(s)	143, 265, 536, 579
HpyCH4IV	ACGT	2 cut(s)	505, 617
HpyCH4V	TGCA	8 cut(s)	405, 509, 535, 621, 695, 751, 770, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	6 cut(s)	112, 209, 217, 297, 552, 894
HpySE526I	ACGT	2 cut(s)	505, 617
Hsp92II	CATG	7 cut(s)	40, 64, 74, 200, 409, 422, 791
HspAI	GCGC	1 cut(s)	849
Kpn2I	TCCGGA	1 cut(s)	858
Kzo9I	GATC	5 cut(s)	11, 274, 424, 575, 745
LmnI	GCTCC	1 cut(s)	921
Lsp1109I	GCAGC	1 cut(s)	763
MaeI	CTAG	3 cut(s)	23, 329, 831
MaeII	ACGT	2 cut(s)	505, 617
MalI	GATC	5 cut(s)	13, 276, 426, 577, 747
MboI	GATC	5 cut(s)	11, 274, 424, 575, 745
MboII	GAAGA	6 cut(s)	58, 76, 313, 512, 755, 947
MfeI	CAATTG	1 cut(s)	530
MflI	RGATCY	4 cut(s)	11, 424, 575, 745
MhlI	GDGCHC	2 cut(s)	86, 823
MluCI	AATT	9 cut(s)	31, 178, 413, 530, 592, 732, 841, 938, 967
MlyI	GAGTC	2 cut(s)	13, 849
MnlI	CCTC	9 cut(s)	121, 226, 319, 358, 415, 713, 769, 922, 925
MroI	TCCGGA	1 cut(s)	858
MseI	TTAA	5 cut(s)	246, 317, 429, 795, 899
MslI	CAYNNNNRTG	2 cut(s)	453, 626
MspA1I	CMGCKG	1 cut(s)	754
MspI	CCGG	2 cut(s)	174, 859
MspR9I	CCNGG	1 cut(s)	954
MunI	CAATTG	1 cut(s)	530
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	954
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	5 cut(s)	11, 274, 424, 575, 745
NlaIII	CATG	7 cut(s)	40, 64, 74, 200, 409, 422, 791
NlaIV	GGNNCC	1 cut(s)	951
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PagI	TCATGA	4 cut(s)	36, 60, 196, 418
PctI	GAATGC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	293, 803
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	753, 756
PleI	GAGTC	2 cut(s)	12, 849
PpsI	GAGTC	2 cut(s)	12, 849
Ppu21I	YACGTR	1 cut(s)	618
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	952
PspGI	CCWGG	1 cut(s)	952
PspN4I	GGNNCC	1 cut(s)	951
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	753
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	4 cut(s)	11, 424, 575, 745
RsaI	GTAC	4 cut(s)	550, 616, 660, 780
RsaNI	GTAC	4 cut(s)	549, 615, 659, 779
RseI	CAYNNNNRTG	2 cut(s)	453, 626
Rsr2I	CGGWCCG	1 cut(s)	155
RsrII	CGGWCCG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	5 cut(s)	246, 317, 429, 795, 899
SatI	GCNGC	2 cut(s)	752, 755
Sau3AI	GATC	5 cut(s)	11, 274, 424, 575, 745
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	2 cut(s)	13, 849
ScrFI	CCNGG	1 cut(s)	954
SduI	GDGCHC	2 cut(s)	86, 823
SfcI	CTRYAG	2 cut(s)	726, 749
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	453, 626
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	9 cut(s)	31, 178, 413, 530, 592, 732, 841, 938, 967
SsiI	CCGC	2 cut(s)	153, 754
SspI	AATATT	4 cut(s)	107, 400, 541, 799
SspMI	CTAG	3 cut(s)	23, 329, 831
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	952
StyI	CCWWGG	1 cut(s)	373
TaiI	ACGT	2 cut(s)	508, 620
TaqI	TCGA	2 cut(s)	16, 823
TasI	AATT	9 cut(s)	31, 178, 413, 530, 592, 732, 841, 938, 967
TauI	GCSGC	1 cut(s)	757
TfiI	GAWTC	2 cut(s)	293, 803
Tru1I	TTAA	5 cut(s)	246, 317, 429, 795, 899
Tru9I	TTAA	5 cut(s)	246, 317, 429, 795, 899
TseI	GCWGC	1 cut(s)	751
TspGWI	ACGGA	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	31, 413
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	3 cut(s)	23, 329, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.