Rmu_ssc0000243.1_g000012
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000243.1
OG0001342
Physical Location & Seq
Reverse (-)
44878 .. 46853
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000243.1_g000012.1.cds

Sequence Viewer

Length: 1602 bp
atgagcgcatttgagtccgccattgcttggggtttggccctcgaagccctcgcaagctcgaaacaagtcgccgtatcgattctacacgatttgatggcccaaatcccacctaacttacccgacgacttgcggaacagcgtcaacgaaagggtcgctctgcgatgcttggaggaattattcggcgctcacgatgctcctcccgtccggcggcggtccaaactcagcttcgaattgtcggagagctgccaacaggttcttagacgcattgtgaatgagactgcagaatctgatgtgaggatgggaggaggagggaagtggaaatgggatattgagccctttattgtgcacaaaagagcttctatgccgacatgtgctttgaacatgcttaaagattctgttgttgattgtagtcatccatatgctgaattgtttggaagaaagagtggattagcatttgttagggttgctgggagtgatggtattttggggcttaatggtggctgctctactgctccaaacattggcattgaagaagcgcggcatgatgaaagtgcattgccttgcaagaggggtaaaactgcctcagaaaccgaaaaagtggcggatgaaaactatgatggttcgggtgtaaatgccaagaagatgaagatggatgactcttatgttttgcagtcggcacaggacaactcagttcctttagcgggaagagaaatgttggaaggttcattggaaagggaaattccagtttcccagagagaaaagtgtgtgttgtcagaatttcagatggatatgagggtggaaacgtgggcactagaggatggtcatgatgattatactgcctcaaagagaagtggggatgcaatccataagagttttgtagaaaatccttgtgctgataaattcaaagatggtagtgggtttagtcctgaacatacaatatcaggtattgctcccccacatgagacgcagcataaggtttctgctaaagactccagttgtaacattgaccatgagtttcatattgaagtaccacatcctgtatctgttgatggatccaaacagaagagcattgctgataaaggcaaaggtgttagtgagcattgtcctgaactaacaacatcgcctgttgctcctccaggtaaaagccagcgtaaggtttttgccaaagaatctgattacaacagtgagcatgattctcatattaatataacacgtcctgcatcagcagatgtatcccagaagaagaccattgctgatggagtcaaggacctctcacactgggatttcatcgccatggagaagcgtgatttcttgagctctaaatgtgcatggactcgttattactattcgaaagagaaagatcattgtctaatgtgtaatgaaggtggtcagttgttgatttgtagtaccagtgattgccctttggcgtatcatgaaagctgcatgggttccaaatttatctcttataagaccggtgagttttactgtcctttctgtgcatatgatctagatctcacggagtatcttgaagctgagaaagaagcctcccggttaaagaaggacctatgggcgtttctttgtttgctaggatcatcttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

533

Amino Acids

58.87

Weight (kDa)

5.56

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1467
AccB7I CCANNNNNTGG 2 cut(s) 27, 521
AccII CGCG 1 cut(s) 538
AciI CCGC 7 cut(s) 18, 130, 208, 211, 538, 602, 701
AclWI GGATC 3 cut(s) 1047, 1060, 1597
AcsI RAATTY 4 cut(s) 738, 776, 899, 1454
AfaI GTAC 2 cut(s) 1029, 1408
AfiI CCNNNNNNNGG 5 cut(s) 27, 207, 521, 701, 1153
AflIII ACRYGT 2 cut(s) 368, 1211
AgeI ACCGGT 1 cut(s) 1472
AgsI TTSAA 5 cut(s) 379, 530, 904, 1025, 1529
AjiI CACGTC 1 cut(s) 1214
AjnI CCWGG 1 cut(s) 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 7 cut(s) 57, 225, 243, 356, 1317, 1440, 1532
AluI AGCT 7 cut(s) 57, 225, 243, 356, 1317, 1440, 1532
Alw21I GWGCWC 2 cut(s) 348, 1319
Alw26I GTCTC 2 cut(s) 269, 956
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 3 cut(s) 1047, 1060, 1597
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 2 cut(s) 36, 96
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 4 cut(s) 243, 501, 967, 1440
ApoI RAATTY 4 cut(s) 738, 776, 899, 1454
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AseI ATTAAT 1 cut(s) 1203
AsiGI ACCGGT 1 cut(s) 1472
AspLEI GCGC 3 cut(s) 8, 185, 538
AspS9I GGNCC 5 cut(s) 37, 97, 213, 1267, 1561
AsuC2I CCSGG 1 cut(s) 1549
AsuHPI GGTGA 1 cut(s) 1487
AsuII TTCGAA 2 cut(s) 228, 1349
AvaII GGWCC 3 cut(s) 213, 1267, 1561
BaeGI GKGCMC 2 cut(s) 348, 811
BamHI GGATCC 1 cut(s) 1052
BanII GRGCYC 2 cut(s) 336, 1319
BbsI GAAGAC 1 cut(s) 1250
Bbv12I GWGCWC 2 cut(s) 348, 1319
BbvI GCAGC 4 cut(s) 230, 488, 979, 1427
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 1137
BciVI GTATCC 1 cut(s) 1243
BcnI CCSGG 1 cut(s) 1549
BcoDI GTCTC 2 cut(s) 269, 956
BfaI CTAG 3 cut(s) 812, 1508, 1586
BfmI CTRYAG 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 186
BfuI GTATCC 1 cut(s) 1243
BglII AGATCT 1 cut(s) 1510
BisI GCNGC 6 cut(s) 209, 244, 502, 539, 968, 1441
BlsI GCNGC 6 cut(s) 210, 245, 503, 540, 969, 1442
Bme1390I CCNGG 2 cut(s) 1137, 1549
Bme18I GGWCC 3 cut(s) 213, 1267, 1561
BmgBI CACGTC 1 cut(s) 1214
BmgT120I GGNCC 5 cut(s) 37, 97, 213, 1267, 1561
BmiI GGNNCC 2 cut(s) 1054, 1450
BmrFI CCNGG 2 cut(s) 1137, 1549
BmrI ACTGGG 1 cut(s) 1288
BmsI GCATC 4 cut(s) 152, 181, 847, 1229
BmuI ACTGGG 1 cut(s) 1288
BpiI GAAGAC 1 cut(s) 1250
BpmI CTGGAG 2 cut(s) 976, 1119
Bpu14I TTCGAA 2 cut(s) 228, 1349
BpuEI CTTGAG 1 cut(s) 1333
BpuMI CCSGG 1 cut(s) 1549
Bsa29I ATCGAT 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 1509
BsaJI CCNNGG 1 cut(s) 1293
BsaWI WCCGGW 1 cut(s) 1472
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 207, 521, 701, 1153
Bse118I RCCGGY 1 cut(s) 1472
Bse1I ACTGG 4 cut(s) 743, 993, 1283, 1410
Bse3DI GCAATG 4 cut(s) 21, 554, 1068, 1248
Bse8I GATNNNNATC 1 cut(s) 1509
BseBI CCWGG 1 cut(s) 1137
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 1293
BseGI GGATG 7 cut(s) 303, 412, 610, 658, 823, 862, 1033
BseJI GATNNNNATC 1 cut(s) 1509
BseLI CCNNNNNNNGG 5 cut(s) 27, 207, 521, 701, 1153
BseMI GCAATG 4 cut(s) 21, 554, 1068, 1248
BseMII CTCAG 4 cut(s) 235, 597, 702, 1524
BseNI ACTGG 4 cut(s) 743, 993, 1283, 1410
BseRI GAGGAG 4 cut(s) 186, 318, 321, 1122
BseSI GKGCMC 2 cut(s) 348, 811
BseXI GCAGC 4 cut(s) 230, 488, 979, 1427
BseYI CCCAGC 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 538
BshFI GGCC 2 cut(s) 38, 98
BshTI ACCGGT 1 cut(s) 1472
BshVI ATCGAT 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 348, 1319
BsiSI CCGG 3 cut(s) 205, 1473, 1549
BslI CCNNNNNNNGG 5 cut(s) 27, 207, 521, 701, 1153
BsmAI GTCTC 2 cut(s) 269, 956
BsmBI CGTCTC 1 cut(s) 956
BsnI GGCC 2 cut(s) 38, 98
Bsp119I TTCGAA 2 cut(s) 228, 1349
Bsp1286I GDGCHC 4 cut(s) 336, 348, 811, 1319
Bsp143I GATC 5 cut(s) 1052, 1360, 1504, 1510, 1589
Bsp19I CCATGG 1 cut(s) 1293
BspACI CCGC 7 cut(s) 18, 130, 208, 211, 538, 602, 701
BspANI GGCC 2 cut(s) 38, 98
BspCNI CTCAG 4 cut(s) 234, 596, 701, 1525
BspDI ATCGAT 1 cut(s) 77
BspFNI CGCG 1 cut(s) 538
BspHI TCATGA 2 cut(s) 823, 1432
BspLI GGNNCC 2 cut(s) 1054, 1450
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 3 cut(s) 1047, 1060, 1597
BspQI GCTCTTC 1 cut(s) 1058
BspT104I TTCGAA 2 cut(s) 228, 1349
BsrDI GCAATG 4 cut(s) 21, 554, 1068, 1248
BsrFI RCCGGY 1 cut(s) 1472
BsrI ACTGG 4 cut(s) 743, 993, 1283, 1410
BssAI RCCGGY 1 cut(s) 1472
BssECI CCNNGG 1 cut(s) 1293
BssMI GATC 5 cut(s) 1052, 1360, 1504, 1510, 1589
BssT1I CCWWGG 1 cut(s) 1293
Bst2UI CCWGG 1 cut(s) 1137
Bst4CI ACNGT 2 cut(s) 1184, 1487
Bst6I CTCTTC 2 cut(s) 700, 1058
BstBI TTCGAA 2 cut(s) 228, 1349
BstC8I GCNNGC 2 cut(s) 55, 1148
BstDEI CTNAG 5 cut(s) 221, 257, 583, 688, 1533
BstDSI CCRYGG 1 cut(s) 1293
BstF5I GGATG 7 cut(s) 303, 412, 610, 658, 823, 862, 1033
BstFNI CGCG 1 cut(s) 538
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 3 cut(s) 8, 185, 538
BstKTI GATC 5 cut(s) 1055, 1363, 1507, 1513, 1592
BstMAI GTCTC 2 cut(s) 269, 956
BstMBI GATC 5 cut(s) 1052, 1360, 1504, 1510, 1589
BstMWI GCNNNNNNNGC 2 cut(s) 44, 191
BstNI CCWGG 1 cut(s) 1137
BstNSI RCATGY 2 cut(s) 372, 385
BstSCI CCNGG 2 cut(s) 1135, 1547
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 2 cut(s) 348, 811
BstUI CGCG 1 cut(s) 538
BstV1I GCAGC 4 cut(s) 230, 488, 979, 1427
BstV2I GAAGAC 1 cut(s) 1250
BstX2I RGATCY 2 cut(s) 1052, 1510
BstYI RGATCY 2 cut(s) 1052, 1510
Bsu15I ATCGAT 1 cut(s) 77
BsuI GTATCC 1 cut(s) 1243
BsuRI GGCC 2 cut(s) 38, 98
BsuTUI ATCGAT 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 1293
BtgZI GCGATG 3 cut(s) 175, 1104, 1273
BtrI CACGTC 1 cut(s) 1214
BtsCI GGATG 7 cut(s) 303, 412, 610, 658, 823, 862, 1033
BtsIMutI CAGTG 3 cut(s) 1189, 1276, 1417
Cac8I GCNNGC 2 cut(s) 55, 1148
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 2 cut(s) 823, 1432
CfoI GCGC 3 cut(s) 8, 185, 538
Cfr10I RCCGGY 1 cut(s) 1472
Cfr13I GGNCC 5 cut(s) 37, 97, 213, 1267, 1561
ClaI ATCGAT 1 cut(s) 77
CseI GACGC 3 cut(s) 127, 270, 973
Csp6I GTAC 2 cut(s) 1028, 1407
CspAI ACCGGT 1 cut(s) 1472
CviQI GTAC 2 cut(s) 1028, 1407
DdeI CTNAG 5 cut(s) 221, 257, 583, 688, 1533
DpnI GATC 5 cut(s) 1054, 1362, 1506, 1512, 1591
DpnII GATC 5 cut(s) 1052, 1360, 1504, 1510, 1589
Eam1104I CTCTTC 2 cut(s) 700, 1058
EarI CTCTTC 2 cut(s) 700, 1058
EciI GGCGGA 2 cut(s) 7, 617
Ecl136II GAGCTC 1 cut(s) 1317
Eco130I CCWWGG 1 cut(s) 1293
Eco24I GRGCYC 2 cut(s) 336, 1319
Eco47I GGWCC 3 cut(s) 213, 1267, 1561
Eco53kI GAGCTC 1 cut(s) 1317
EcoICRI GAGCTC 1 cut(s) 1317
EcoO109I RGGNCCY 2 cut(s) 1267, 1561
EcoRII CCWGG 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 1293
EcoT38I GRGCYC 2 cut(s) 336, 1319
ErhI CCWWGG 1 cut(s) 1293
Esp3I CGTCTC 1 cut(s) 956
FauI CCCGC 1 cut(s) 694
FauNDI CATATG 2 cut(s) 418, 1501
Fnu4HI GCNGC 6 cut(s) 209, 244, 502, 539, 968, 1441
FokI GGATG 7 cut(s) 310, 399, 617, 665, 830, 869, 1020
FriOI GRGCYC 2 cut(s) 336, 1319
Fsp4HI GCNGC 6 cut(s) 209, 244, 502, 539, 968, 1441
FspBI CTAG 3 cut(s) 812, 1508, 1586
GlaI GCGC 3 cut(s) 7, 184, 537
GluI GCNGC 6 cut(s) 209, 244, 502, 539, 968, 1441
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 2 cut(s) 976, 1119
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 38, 98
HapII CCGG 3 cut(s) 205, 1473, 1549
HgaI GACGC 3 cut(s) 127, 270, 973
HhaI GCGC 3 cut(s) 8, 185, 538
Hin6I GCGC 3 cut(s) 6, 183, 536
HinP1I GCGC 3 cut(s) 6, 183, 536
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HpaII CCGG 3 cut(s) 205, 1473, 1549
HphI GGTGA 1 cut(s) 1487
Hpy166II GTNNAC 2 cut(s) 142, 346
Hpy188I TCNGA 6 cut(s) 238, 289, 586, 775, 783, 1174
Hpy188III TCNNGA 9 cut(s) 188, 824, 926, 1106, 1312, 1433, 1508, 1526, 1599
Hpy8I GTNNAC 2 cut(s) 142, 346
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 713, 1376, 1552
HpyCH4III ACNGT 2 cut(s) 1184, 1487
HpyCH4IV ACGT 2 cut(s) 803, 1213
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 191
HpyF3I CTNAG 5 cut(s) 221, 257, 583, 688, 1533
HpySE526I ACGT 2 cut(s) 803, 1213
HspAI GCGC 3 cut(s) 6, 183, 536
Kzo9I GATC 5 cut(s) 1052, 1360, 1504, 1510, 1589
LguI GCTCTTC 1 cut(s) 1058
LmnI GCTCC 4 cut(s) 199, 517, 955, 1135
Lsp1109I GCAGC 4 cut(s) 230, 488, 979, 1427
LweI GCATC 4 cut(s) 152, 181, 847, 1229
MaeI CTAG 3 cut(s) 812, 1508, 1586
MaeII ACGT 2 cut(s) 803, 1213
MaeIII GTNAC 1 cut(s) 998
MalI GATC 5 cut(s) 1054, 1362, 1506, 1512, 1591
MboI GATC 5 cut(s) 1052, 1360, 1504, 1510, 1589
MboII GAAGA 9 cut(s) 447, 542, 652, 658, 717, 1075, 1252, 1255, 1587
MflI RGATCY 2 cut(s) 1052, 1510
MhlI GDGCHC 4 cut(s) 336, 348, 811, 1319
MluCI AATT 7 cut(s) 173, 230, 425, 738, 776, 899, 1454
MlyI GAGTC 5 cut(s) 23, 650, 983, 1269, 1327
MmeI TCCRAC 2 cut(s) 216, 696
MseI TTAA 4 cut(s) 387, 492, 1203, 1553
MslI CAYNNNNRTG 2 cut(s) 417, 1292
MspI CCGG 3 cut(s) 205, 1473, 1549
MspR9I CCNGG 2 cut(s) 1137, 1549
MvaI CCWGG 1 cut(s) 1137
MvnI CGCG 1 cut(s) 538
MwoI GCNNNNNNNGC 2 cut(s) 44, 191
NciI CCSGG 1 cut(s) 1549
NcoI CCATGG 1 cut(s) 1293
NdeI CATATG 2 cut(s) 418, 1501
NdeII GATC 5 cut(s) 1052, 1360, 1504, 1510, 1589
NlaIV GGNNCC 2 cut(s) 1054, 1450
NspI RCATGY 2 cut(s) 372, 385
NspV TTCGAA 2 cut(s) 228, 1349
PagI TCATGA 2 cut(s) 823, 1432
PciI ACATGT 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 1058
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 5 cut(s) 79, 284, 392, 1169, 1193
PflMI CCANNNNNTGG 2 cut(s) 27, 521
PinAI ACCGGT 1 cut(s) 1472
PkrI GCNGC 6 cut(s) 210, 245, 503, 540, 969, 1442
PleI GAGTC 5 cut(s) 22, 650, 983, 1268, 1327
PpsI GAGTC 5 cut(s) 22, 650, 983, 1268, 1327
PpuMI RGGWCCY 2 cut(s) 1267, 1561
PscI ACATGT 1 cut(s) 368
PshBI ATTAAT 1 cut(s) 1203
PsiI TTATAA 1 cut(s) 1467
Psp124BI GAGCTC 1 cut(s) 1319
Psp5II RGGWCCY 2 cut(s) 1267, 1561
Psp6I CCWGG 1 cut(s) 1135
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 1 cut(s) 1135
PspN4I GGNNCC 2 cut(s) 1054, 1450
PspPI GGNCC 5 cut(s) 37, 97, 213, 1267, 1561
PspPPI RGGWCCY 2 cut(s) 1267, 1561
PstI CTGCAG 1 cut(s) 283
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 2 cut(s) 1052, 1510
RsaI GTAC 2 cut(s) 1029, 1408
RsaNI GTAC 2 cut(s) 1028, 1407
RseI CAYNNNNRTG 2 cut(s) 417, 1292
SacI GAGCTC 1 cut(s) 1319
SapI GCTCTTC 1 cut(s) 1058
SaqAI TTAA 4 cut(s) 387, 492, 1203, 1553
SatI GCNGC 6 cut(s) 209, 244, 502, 539, 968, 1441
Sau3AI GATC 5 cut(s) 1052, 1360, 1504, 1510, 1589
Sau96I GGNCC 5 cut(s) 37, 97, 213, 1267, 1561
SchI GAGTC 5 cut(s) 23, 650, 983, 1269, 1327
ScrFI CCNGG 2 cut(s) 1137, 1549
SduI GDGCHC 4 cut(s) 336, 348, 811, 1319
SfaNI GCATC 4 cut(s) 152, 181, 847, 1229
SfcI CTRYAG 1 cut(s) 279
SfuI TTCGAA 2 cut(s) 228, 1349
SinI GGWCC 3 cut(s) 213, 1267, 1561
SmiMI CAYNNNNRTG 2 cut(s) 417, 1292
SmlI CTYRAG 1 cut(s) 1312
SmoI CTYRAG 1 cut(s) 1312
Sse9I AATT 7 cut(s) 173, 230, 425, 738, 776, 899, 1454
SsiI CCGC 7 cut(s) 18, 130, 208, 211, 538, 602, 701
SspMI CTAG 3 cut(s) 812, 1508, 1586
SstI GAGCTC 1 cut(s) 1319
StyD4I CCNGG 2 cut(s) 1135, 1547
StyI CCWWGG 1 cut(s) 1293
TaaI ACNGT 2 cut(s) 1184, 1487
TaiI ACGT 2 cut(s) 806, 1216
TaqI TCGA 5 cut(s) 42, 59, 77, 228, 1349
TasI AATT 7 cut(s) 173, 230, 425, 738, 776, 899, 1454
TauI GCSGC 2 cut(s) 211, 541
TfiI GAWTC 5 cut(s) 79, 284, 392, 1169, 1193
Tru1I TTAA 4 cut(s) 387, 492, 1203, 1553
Tru9I TTAA 4 cut(s) 387, 492, 1203, 1553
TscAI CASTG 3 cut(s) 1189, 1283, 1417
TseI GCWGC 4 cut(s) 243, 501, 967, 1440
TspDTI ATGAA 8 cut(s) 561, 621, 659, 714, 1007, 1276, 1395, 1449
TspGWI ACGGA 1 cut(s) 1532
TspRI CASTG 3 cut(s) 1189, 1283, 1417
Van91I CCANNNNNTGG 2 cut(s) 27, 521
VneI GTGCAC 1 cut(s) 344
VpaK11BI GGWCC 3 cut(s) 213, 1267, 1561
VspI ATTAAT 1 cut(s) 1203
XapI RAATTY 4 cut(s) 738, 776, 899, 1454
XbaI TCTAGA 1 cut(s) 1507
XceI RCATGY 2 cut(s) 372, 385
XspI CTAG 3 cut(s) 812, 1508, 1586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.