RLG00000030848
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001342
Physical Location & Seq
Forward (+)
189295 .. 191034
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030848

Sequence Viewer

Length: 1521 bp
ATGGGGAAGATGAGCGCATTTGAGTCCGCCATTGCTTGGGGTTTGGCCCTCGAAGCCCTCGCAAGCTCGAAACAAGTCGCCTTATCGATTCTACACGATTTGATCGCCCAAATCCCACCAAACTTACCCGACGACTTGCGGAACAGTGTCAACGAAAATGTCGCTCTGCGATGCTTGGAGGAATTATTCGGCGCTCACGATGCTCCTCCCGTCCGGCGGCGGTCCAAACTCAGCATCGAATTGTCGGAGAGCTGCCAACAAGTTCTTAGACGCATTGTGAATGAGACAGCAGAATCTGATGTGAGGATGGGAGGAGGAGGGAAGTGGAAATGGGATATTGAGCCCTTTATTGAGCACAAAAGAGCTTCTATGCCGAAATGTGCTCTGAACAAGCTTAAAGATTCTATTGTTGATTGTAGTCATCCATATGCTGAATTGTTTGGAAGAAAGAGTGGATTAGCATTTGTTAGGGTTGCTGGGAGTGATGGTATTTTGGGGCTTAATGGTGGCTGCTCTAATGCTCCAGACATTGGTGTTGAAGAAGCGCGGAATGATGAAACTGCATTGCCTTCCAAGAGGGGTAAAAATGCCTCAGAAACCGAAAAAGTGGCGGATGAAAACTATGATGGTTCGGGTGTAAATGCCAAGAAGATGAAGATGGATGCCTCTTATGTTTTGCGGTCAGCACAGGACAACTCAGTTCCTTTAGCGGGAAGAGAAATGTTGGAAGATTCATTGGAAAGGGACATTCCAGTTTCCAAGACAGAAAAGTGTGTGTTGTCAGAATTTGGGATGGATATGAGGGTGGAAACGTGGGCACTAGAGGATGGTCGTGATGATTATACTGCCTCAAAGAGAAGTGGGGGTGCAATCTATAAGAGTTTTGTAGAAAATCCATGTGCTGATAAATTCAAAGATGGTAGTGGGTTTAGTCCTGAACGTACAATATCAGGTATTGCTTCTCCACATGAGACGCAGCATAAGGTTTCTGCTAAAGACTCCAGTTGTAACATTGACCATGAGTTTCATATTGAAGTGCCACATCCTGTATCTGTTGATGGATCCAAACAGAAGAGCATTGCTGATAAAGGCAAAGGTGTTAGTGAGCATTGTCCTGAACTAACAACATCGCCTGTTGCTCCTCCAGATGTATCCCAGAAGAAGACCATTGCTGATGGAGTCAAGGACCTCTCACGCTGGGATTTCGTCGCCATGGAGAAGCGTGATTTCTTGAGCTCTAAATGTGCATTGACTCGTTATTACTATTCGAAAGAGAAAGATCATTGTCTAATGTGTAATGAAGGTGGTCAGTTGTTGATTTGTAGTACCAGTGATTGCCCTTTGGCGTATCATGAAAGCTGCATGGGTTCCAAATTTATCTCTTATAAGACCGGTGACTTCTACTGTCCCTTCTGTGCATACGATCTAGATCTCACGGAGTATCTTGAAGCTGAGAAAGAAGCCTCCCGGTTAAAGAAGGACCTATGGACGTTTCTTTGTTTGCTAGGATCATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

507

Amino Acids

55.65

Weight (kDa)

5.47

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1386
AccB7I CCANNNNNTGG 2 cut(s) 36, 530
AccII CGCG 1 cut(s) 547
AciI CCGC 8 cut(s) 27, 139, 217, 220, 547, 611, 679, 710
AclWI GGATC 3 cut(s) 1056, 1069, 1516
AcsI RAATTY 3 cut(s) 785, 908, 1373
AfaI GTAC 2 cut(s) 943, 1327
AfiI CCNNNNNNNGG 4 cut(s) 36, 216, 530, 710
AgeI ACCGGT 1 cut(s) 1391
AgsI TTSAA 4 cut(s) 539, 913, 1034, 1448
AluBI AGCT 7 cut(s) 66, 252, 365, 394, 1236, 1359, 1451
AluI AGCT 7 cut(s) 66, 252, 365, 394, 1236, 1359, 1451
Alw21I GWGCWC 3 cut(s) 357, 385, 1238
Alw26I GTCTC 2 cut(s) 278, 965
AlwI GGATC 3 cut(s) 1056, 1069, 1516
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 4 cut(s) 252, 510, 976, 1359
ApoI RAATTY 3 cut(s) 785, 908, 1373
AsiGI ACCGGT 1 cut(s) 1391
AspLEI GCGC 3 cut(s) 17, 194, 547
AspS9I GGNCC 4 cut(s) 46, 222, 1186, 1480
AsuC2I CCSGG 1 cut(s) 1468
AsuHPI GGTGA 1 cut(s) 1406
AsuII TTCGAA 1 cut(s) 1268
AvaII GGWCC 3 cut(s) 222, 1186, 1480
BaeGI GKGCMC 1 cut(s) 820
BamHI GGATCC 1 cut(s) 1061
BanII GRGCYC 2 cut(s) 345, 1238
BbsI GAAGAC 1 cut(s) 1169
Bbv12I GWGCWC 3 cut(s) 357, 385, 1238
BbvI GCAGC 4 cut(s) 239, 497, 988, 1346
BccI CCATC 9 cut(s) 301, 479, 620, 652, 787, 821, 911, 1052, 1169
BciVI GTATCC 1 cut(s) 1162
BcnI CCSGG 1 cut(s) 1468
BcoDI GTCTC 2 cut(s) 278, 965
BfaI CTAG 3 cut(s) 821, 1427, 1505
BfoI RGCGCY 1 cut(s) 195
BfuI GTATCC 1 cut(s) 1162
BglII AGATCT 1 cut(s) 1429
BisI GCNGC 5 cut(s) 218, 253, 511, 977, 1360
BlsI GCNGC 5 cut(s) 219, 254, 512, 978, 1361
Bme1390I CCNGG 1 cut(s) 1468
Bme18I GGWCC 3 cut(s) 222, 1186, 1480
BmgT120I GGNCC 4 cut(s) 46, 222, 1186, 1480
BmiI GGNNCC 2 cut(s) 1063, 1369
BmrFI CCNGG 1 cut(s) 1468
BmsI GCATC 4 cut(s) 161, 190, 243, 652
BpiI GAAGAC 1 cut(s) 1169
BpmI CTGGAG 3 cut(s) 507, 985, 1128
Bpu14I TTCGAA 1 cut(s) 1268
BpuEI CTTGAG 1 cut(s) 1252
BpuMI CCSGG 1 cut(s) 1468
Bsa29I ATCGAT 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 1428
BsaJI CCNNGG 1 cut(s) 1212
BsaWI WCCGGW 1 cut(s) 1391
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 216, 530, 710
Bse118I RCCGGY 1 cut(s) 1391
Bse1I ACTGG 3 cut(s) 752, 1002, 1329
Bse3DI GCAATG 4 cut(s) 30, 563, 1077, 1167
Bse8I GATNNNNATC 1 cut(s) 1428
BseCI ATCGAT 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 1212
BseGI GGATG 7 cut(s) 312, 421, 619, 667, 798, 832, 1042
BseJI GATNNNNATC 1 cut(s) 1428
BseLI CCNNNNNNNGG 4 cut(s) 36, 216, 530, 710
BseMI GCAATG 4 cut(s) 30, 563, 1077, 1167
BseMII CTCAG 4 cut(s) 244, 606, 711, 1443
BseNI ACTGG 3 cut(s) 752, 1002, 1329
BseRI GAGGAG 4 cut(s) 195, 327, 330, 1131
BseSI GKGCMC 1 cut(s) 820
BseXI GCAGC 4 cut(s) 239, 497, 988, 1346
BseYI CCCAGC 2 cut(s) 476, 1197
Bsh1236I CGCG 1 cut(s) 547
BshFI GGCC 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 1391
BshVI ATCGAT 1 cut(s) 86
BsiHKAI GWGCWC 3 cut(s) 357, 385, 1238
BsiSI CCGG 3 cut(s) 214, 1392, 1468
BslFI GGGAC 2 cut(s) 758, 1392
BslI CCNNNNNNNGG 4 cut(s) 36, 216, 530, 710
BsmAI GTCTC 2 cut(s) 278, 965
BsmBI CGTCTC 1 cut(s) 965
BsmFI GGGAC 2 cut(s) 758, 1392
BsnI GGCC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 1268
Bsp1286I GDGCHC 5 cut(s) 345, 357, 385, 820, 1238
Bsp143I GATC 6 cut(s) 102, 1061, 1279, 1423, 1429, 1508
Bsp19I CCATGG 1 cut(s) 1212
BspACI CCGC 8 cut(s) 27, 139, 217, 220, 547, 611, 679, 710
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 4 cut(s) 243, 605, 710, 1444
BspDI ATCGAT 1 cut(s) 86
BspFNI CGCG 1 cut(s) 547
BspHI TCATGA 1 cut(s) 1351
BspLI GGNNCC 2 cut(s) 1063, 1369
BspPI GGATC 3 cut(s) 1056, 1069, 1516
BspQI GCTCTTC 1 cut(s) 1067
BspT104I TTCGAA 1 cut(s) 1268
BsrDI GCAATG 4 cut(s) 30, 563, 1077, 1167
BsrFI RCCGGY 1 cut(s) 1391
BsrI ACTGG 3 cut(s) 752, 1002, 1329
BssAI RCCGGY 1 cut(s) 1391
BssECI CCNNGG 1 cut(s) 1212
BssMI GATC 6 cut(s) 102, 1061, 1279, 1423, 1429, 1508
BssT1I CCWWGG 1 cut(s) 1212
Bst4CI ACNGT 2 cut(s) 146, 1406
Bst6I CTCTTC 2 cut(s) 709, 1067
BstBI TTCGAA 1 cut(s) 1268
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 5 cut(s) 230, 266, 592, 697, 1452
BstDSI CCRYGG 1 cut(s) 1212
BstF5I GGATG 7 cut(s) 312, 421, 619, 667, 798, 832, 1042
BstFNI CGCG 1 cut(s) 547
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 3 cut(s) 17, 194, 547
BstKTI GATC 6 cut(s) 105, 1064, 1282, 1426, 1432, 1511
BstMAI GTCTC 2 cut(s) 278, 965
BstMBI GATC 6 cut(s) 102, 1061, 1279, 1423, 1429, 1508
BstMWI GCNNNNNNNGC 2 cut(s) 53, 200
BstSCI CCNGG 1 cut(s) 1466
BstSLI GKGCMC 1 cut(s) 820
BstUI CGCG 1 cut(s) 547
BstV1I GCAGC 4 cut(s) 239, 497, 988, 1346
BstV2I GAAGAC 1 cut(s) 1169
BstX2I RGATCY 2 cut(s) 1061, 1429
BstYI RGATCY 2 cut(s) 1061, 1429
Bsu15I ATCGAT 1 cut(s) 86
BsuI GTATCC 1 cut(s) 1162
BsuRI GGCC 1 cut(s) 47
BsuTUI ATCGAT 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 1212
BtgZI GCGATG 2 cut(s) 184, 1113
BtsCI GGATG 7 cut(s) 312, 421, 619, 667, 798, 832, 1042
BtsIMutI CAGTG 2 cut(s) 151, 1336
Cac8I GCNNGC 1 cut(s) 64
CaiI CAGNNNCTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 1351
CfoI GCGC 3 cut(s) 17, 194, 547
Cfr10I RCCGGY 1 cut(s) 1391
Cfr13I GGNCC 4 cut(s) 46, 222, 1186, 1480
ClaI ATCGAT 1 cut(s) 86
CseI GACGC 2 cut(s) 279, 982
Csp6I GTAC 2 cut(s) 942, 1326
CspAI ACCGGT 1 cut(s) 1391
CviAII CATG 6 cut(s) 897, 968, 1019, 1213, 1352, 1363
CviQI GTAC 2 cut(s) 942, 1326
DdeI CTNAG 5 cut(s) 230, 266, 592, 697, 1452
DpnI GATC 6 cut(s) 104, 1063, 1281, 1425, 1431, 1510
DpnII GATC 6 cut(s) 102, 1061, 1279, 1423, 1429, 1508
Eam1104I CTCTTC 2 cut(s) 709, 1067
EarI CTCTTC 2 cut(s) 709, 1067
EciI GGCGGA 2 cut(s) 16, 626
Ecl136II GAGCTC 1 cut(s) 1236
Eco130I CCWWGG 1 cut(s) 1212
Eco24I GRGCYC 2 cut(s) 345, 1238
Eco47I GGWCC 3 cut(s) 222, 1186, 1480
Eco53kI GAGCTC 1 cut(s) 1236
EcoICRI GAGCTC 1 cut(s) 1236
EcoO109I RGGNCCY 2 cut(s) 1186, 1480
EcoT14I CCWWGG 1 cut(s) 1212
EcoT38I GRGCYC 2 cut(s) 345, 1238
ErhI CCWWGG 1 cut(s) 1212
Esp3I CGTCTC 1 cut(s) 965
FaeI CATG 6 cut(s) 900, 971, 1022, 1216, 1355, 1366
FaqI GGGAC 2 cut(s) 758, 1392
FatI CATG 6 cut(s) 896, 967, 1018, 1212, 1351, 1362
FauI CCCGC 1 cut(s) 703
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 5 cut(s) 218, 253, 511, 977, 1360
FokI GGATG 7 cut(s) 319, 408, 626, 674, 805, 839, 1029
FriOI GRGCYC 2 cut(s) 345, 1238
Fsp4HI GCNGC 5 cut(s) 218, 253, 511, 977, 1360
FspBI CTAG 3 cut(s) 821, 1427, 1505
GlaI GCGC 3 cut(s) 16, 193, 546
GluI GCNGC 5 cut(s) 218, 253, 511, 977, 1360
GsaI CCCAGC 2 cut(s) 480, 1201
GsuI CTGGAG 3 cut(s) 507, 985, 1128
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 1 cut(s) 47
HapII CCGG 3 cut(s) 214, 1392, 1468
HgaI GACGC 2 cut(s) 279, 982
HhaI GCGC 3 cut(s) 17, 194, 547
Hin1II CATG 6 cut(s) 900, 971, 1022, 1216, 1355, 1366
Hin6I GCGC 3 cut(s) 15, 192, 545
HinP1I GCGC 3 cut(s) 15, 192, 545
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 8 cut(s) 23, 88, 293, 401, 731, 998, 1179, 1252
HpaII CCGG 3 cut(s) 214, 1392, 1468
HphI GGTGA 1 cut(s) 1406
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 5 cut(s) 247, 298, 387, 595, 784
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 2 cut(s) 134, 1211
HpyAV CCTTC 4 cut(s) 579, 1295, 1420, 1471
HpyCH4III ACNGT 2 cut(s) 146, 1406
HpyCH4IV ACGT 3 cut(s) 812, 940, 1490
HpyCH4V TGCA 5 cut(s) 563, 869, 1247, 1362, 1418
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 200
HpyF3I CTNAG 5 cut(s) 230, 266, 592, 697, 1452
HpySE526I ACGT 3 cut(s) 812, 940, 1490
Hsp92II CATG 6 cut(s) 900, 971, 1022, 1216, 1355, 1366
HspAI GCGC 3 cut(s) 15, 192, 545
Kzo9I GATC 6 cut(s) 102, 1061, 1279, 1423, 1429, 1508
LguI GCTCTTC 1 cut(s) 1067
LmnI GCTCC 3 cut(s) 208, 526, 1144
Lsp1109I GCAGC 4 cut(s) 239, 497, 988, 1346
LweI GCATC 4 cut(s) 161, 190, 243, 652
MaeI CTAG 3 cut(s) 821, 1427, 1505
MaeII ACGT 3 cut(s) 812, 940, 1490
MaeIII GTNAC 2 cut(s) 1007, 1394
MalI GATC 6 cut(s) 104, 1063, 1281, 1425, 1431, 1510
MboI GATC 6 cut(s) 102, 1061, 1279, 1423, 1429, 1508
MflI RGATCY 2 cut(s) 1061, 1429
MhlI GDGCHC 5 cut(s) 345, 357, 385, 820, 1238
MluCI AATT 6 cut(s) 182, 239, 434, 785, 908, 1373
MlyI GAGTC 4 cut(s) 32, 992, 1188, 1246
MmeI TCCRAC 2 cut(s) 225, 705
MseI TTAA 3 cut(s) 396, 501, 1472
MslI CAYNNNNRTG 1 cut(s) 426
MspI CCGG 3 cut(s) 214, 1392, 1468
MspR9I CCNGG 1 cut(s) 1468
MvnI CGCG 1 cut(s) 547
MwoI GCNNNNNNNGC 2 cut(s) 53, 200
NciI CCSGG 1 cut(s) 1468
NcoI CCATGG 1 cut(s) 1212
NdeI CATATG 1 cut(s) 427
NdeII GATC 6 cut(s) 102, 1061, 1279, 1423, 1429, 1508
NlaIII CATG 6 cut(s) 900, 971, 1022, 1216, 1355, 1366
NlaIV GGNNCC 2 cut(s) 1063, 1369
NmuCI GTSAC 1 cut(s) 1394
NspV TTCGAA 1 cut(s) 1268
PagI TCATGA 1 cut(s) 1351
PciSI GCTCTTC 1 cut(s) 1067
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 4 cut(s) 88, 293, 401, 731
PflMI CCANNNNNTGG 2 cut(s) 36, 530
PinAI ACCGGT 1 cut(s) 1391
PkrI GCNGC 5 cut(s) 219, 254, 512, 978, 1361
PleI GAGTC 4 cut(s) 31, 992, 1187, 1246
PpsI GAGTC 4 cut(s) 31, 992, 1187, 1246
PpuMI RGGWCCY 2 cut(s) 1186, 1480
PsiI TTATAA 1 cut(s) 1386
Psp124BI GAGCTC 1 cut(s) 1238
Psp5II RGGWCCY 2 cut(s) 1186, 1480
PspFI CCCAGC 2 cut(s) 476, 1197
PspN4I GGNNCC 2 cut(s) 1063, 1369
PspPI GGNCC 4 cut(s) 46, 222, 1186, 1480
PspPPI RGGWCCY 2 cut(s) 1186, 1480
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 2 cut(s) 1061, 1429
RsaI GTAC 2 cut(s) 943, 1327
RsaNI GTAC 2 cut(s) 942, 1326
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 1238
SapI GCTCTTC 1 cut(s) 1067
SaqAI TTAA 3 cut(s) 396, 501, 1472
SatI GCNGC 5 cut(s) 218, 253, 511, 977, 1360
Sau3AI GATC 6 cut(s) 102, 1061, 1279, 1423, 1429, 1508
Sau96I GGNCC 4 cut(s) 46, 222, 1186, 1480
SchI GAGTC 4 cut(s) 32, 992, 1188, 1246
ScrFI CCNGG 1 cut(s) 1468
SduI GDGCHC 5 cut(s) 345, 357, 385, 820, 1238
SfaNI GCATC 4 cut(s) 161, 190, 243, 652
SfuI TTCGAA 1 cut(s) 1268
SinI GGWCC 3 cut(s) 222, 1186, 1480
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 1231
SmoI CTYRAG 1 cut(s) 1231
Sse9I AATT 6 cut(s) 182, 239, 434, 785, 908, 1373
SsiI CCGC 8 cut(s) 27, 139, 217, 220, 547, 611, 679, 710
SspMI CTAG 3 cut(s) 821, 1427, 1505
SstI GAGCTC 1 cut(s) 1238
StyD4I CCNGG 1 cut(s) 1466
StyI CCWWGG 1 cut(s) 1212
TaaI ACNGT 2 cut(s) 146, 1406
TaiI ACGT 3 cut(s) 815, 943, 1493
TaqI TCGA 5 cut(s) 51, 68, 86, 237, 1268
TasI AATT 6 cut(s) 182, 239, 434, 785, 908, 1373
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 4 cut(s) 88, 293, 401, 731
Tru1I TTAA 3 cut(s) 396, 501, 1472
Tru9I TTAA 3 cut(s) 396, 501, 1472
TscAI CASTG 2 cut(s) 151, 1336
TseFI GTSAC 1 cut(s) 1394
TseI GCWGC 4 cut(s) 252, 510, 976, 1359
Tsp45I GTSAC 1 cut(s) 1394
TspDTI ATGAA 7 cut(s) 570, 630, 668, 723, 1016, 1314, 1368
TspGWI ACGGA 1 cut(s) 1451
TspRI CASTG 2 cut(s) 151, 1336
Van91I CCANNNNNTGG 2 cut(s) 36, 530
VpaK11BI GGWCC 3 cut(s) 222, 1186, 1480
XapI RAATTY 3 cut(s) 785, 908, 1373
XbaI TCTAGA 1 cut(s) 1426
XspI CTAG 3 cut(s) 821, 1427, 1505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.