MD14G1067900.v1.1
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0001342
Physical Location & Seq
Reverse (-)
7374549 .. 7377243
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1067900.v1.1.491

Sequence Viewer

Length: 2013 bp
ATGGACGGCATGAACGACCATGAGAGAGCCATTGCTTGGCTTTGGGCCATTGAAGCCCTCGCAAGCTTCAAACAAGTTGACGCATCGCTTTTACACGATTTGATTGCGTTGGCTCCACCATTGCCTGATGATATGGGGAATAATGCAAAGGAAAGGGTTGCTTTGAAATCTTTGGAGAGTTTGTTCAAGTTCGATTCTTGTAATGTGACGAGTGGTGATGTTCCTTCTTCTGCCCAGCGTTCGAAAATCGGCTTTAATTTGACGGAAACTTGTCAAAATGTTCTCAAACGCATTGTAAATGAGACGCCAGAATCTGATTTGAGAACGGGTGGACCGGGGCTGTTGAAATGGGATATTCAACCCTTTATTATGCATAAAAGAGCTTCTTTGCCCAAATGTGCATTGAAACAGCTGAAAGATTCGATTCTTGATGGCACACATCTACATGCAGACGTCTTGAGAAAAAAAGGCGGTTTAACACTTAGAAATGATGGAAATAGAGTTCTTTTGAGAGATAGTAATCCCAGGCTCAATGAGAGTGGCTCTAATGCTCAAAGCATGGGAGTCAAGGGAATCGCAGATCCTCTGATTATTGAGCATGAGAATAAACTATTGGAAGAATATCTGAGTAATGCAAATCTATTTCCTTCCAAAAGGCATAGGATTTCCTCAGATGCTGAAAACATGGAAGATGACAACCATAGTAGCGTGAATGATTATGATGACTGGAAAATAAAATCCAAGAAGATGAAGCGGGATGCCTCTTACATTTCAGAGTCTACAGAACAGAACCAAATTCCTTTACATGGAAAAGAACAGTTGGAAGATTTGTCTGAGAGGGAAAGCTGTGACTTGGCTGAAAATCAGATGGGAATGATGGAGGAAGGCGTGGTCTTAGAGGATTGTATTGATATTTATACTTCCTCAAAGAGATGTGGACAAAGCAGCGGCGATGCAATCCTTAAGAGTCAGTCAGAAAATCATCTTAATGCCACTTCAATGCCTCAAGATAAATTTATGGATGAAGCCCATCAAAATTTATGTATTGATCAAGCCAAAGATGATGGTGGGATTCATCCTGAACCAATAACATCAAGTGTTGCTCCTCCAGATGGAACTCAACAAAAAGTTTCTGCTAAAGTAGCAACTTGTAACAATGAGCATGAAAGTCATATTAAAGCATCACCTCCTGTTTCTACCGAGGGACCCCAAAACAAGAGCATCTCTGAAAGCGGCAATGGCTTGGTTATGGAGAATCTGGCAGATGAAAACCATAATAGTGTAATTGGTTGTGATGATTGCTGTGTAATTACCAAGAAGATGAAGTGGGACCCCTCATATGTTTTACGGTCTATAGAGAAGAACCAAATTCCTCTACATGTAAGAGAACTGTTGGAAGATTCATCTGAAAGAGATGTTCCACTTCCGGAGAGAGAAAGGTGTGACTTGGCAGAAAATCAGATGGGAACAATGGACAAAGGCAAGGTCATAGAGGATGGTCATGATGATCATACTACCTCAAAGAGGTGCGGACAAAGCACTGACCCTGCAGTCATTAAAATTCAGACAGAAAATCCTTGTAATGCCGGTTCATTGCCTCAAGACACATTTCAGGATGAAGTCCCTAAATATACATATAATGATGAAGCGGAAGATGATGGTGGCCTTCATCCTGAACAAAGAGCATCTGTTGTTGCTGCTCCAGATGAAACCCTGCATAAGATTTCTGCTGAGGTATTCAATCGTAACAGTGAGCATGATTTTCATGTTGAAGTATCACTTCCTGCATCCACAGATGAATCCCAACAGAAAAGCATGGCTAATGAAGGTAAAGGCGATGAACATTGTCCTGAACCGAGAACTTTAGGTATAGCTTCACTTGATGAAACCCAGAATGATTCTAACAGTGAGTGTGATTCTCATATTAAAGTGGCACATCCTGCATCTGACGAGGAGTCCCAGCAGAAGAGTATTGCTAAAGAAGCGAGAGAGCTCTTGGACTGGCTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

671

Amino Acids

74.23

Weight (kDa)

4.84

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1550
AatII GACGTC 1 cut(s) 456
AccB7I CCANNNNNTGG 1 cut(s) 36
AccI GTMKAC 1 cut(s) 779
AccIII TCCGGA 1 cut(s) 1426
AciI CCGC 6 cut(s) 471, 754, 948, 1233, 1530, 1649
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 5 cut(s) 795, 1013, 1036, 1368, 1560
AcyI GRCGYC 2 cut(s) 305, 453
AfiI CCNNNNNNNGG 4 cut(s) 36, 806, 1112, 1524
AflII CTTAAG 1 cut(s) 962
AflIII ACRYGT 1 cut(s) 1378
AhdI GACNNNNNGTC 1 cut(s) 1954
AjnI CCWGG 1 cut(s) 524
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AloI GAACNNNNNNTCC 4 cut(s) 167, 199, 486, 518
AluBI AGCT 6 cut(s) 66, 383, 412, 846, 1874, 1993
AluI AGCT 6 cut(s) 66, 383, 412, 846, 1874, 1993
Alw21I GWGCWC 1 cut(s) 1995
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 2 cut(s) 314, 677
Aor13HI TCCGGA 1 cut(s) 1426
AoxI GGCC 2 cut(s) 45, 1663
ApeKI GCWGC 2 cut(s) 945, 1697
ApoI RAATTY 5 cut(s) 795, 1013, 1036, 1368, 1560
ArsI GACNNNNNNTTYG 2 cut(s) 1470, 1502
AspS9I GGNCC 4 cut(s) 45, 332, 1205, 1330
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 227, 1176
AsuII TTCGAA 1 cut(s) 242
AvaII GGWCC 3 cut(s) 332, 1205, 1330
BanII GRGCYC 1 cut(s) 1995
Bbv12I GWGCWC 1 cut(s) 1995
BbvCI CCTCAGC 1 cut(s) 1731
BbvI GCAGC 2 cut(s) 957, 1684
BceAI ACGGC 1 cut(s) 22
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 526
BclI TGATCA 2 cut(s) 1048, 1507
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 3 cut(s) 780, 1353, 1548
BfrI CTTAAG 1 cut(s) 962
BisI GCNGC 4 cut(s) 946, 949, 1234, 1698
BlsI GCNGC 4 cut(s) 947, 950, 1235, 1699
Bme1390I CCNGG 2 cut(s) 336, 526
Bme18I GGWCC 3 cut(s) 332, 1205, 1330
BmeRI GACNNNNNGTC 1 cut(s) 1954
BmgT120I GGNCC 4 cut(s) 45, 332, 1205, 1330
BmiI GGNNCC 5 cut(s) 114, 1206, 1207, 1331, 1332
BmrFI CCNGG 2 cut(s) 336, 526
BmsI GCATC 9 cut(s) 92, 664, 748, 943, 1190, 1230, 1694, 1796, 1952
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BpmI CTGGAG 2 cut(s) 1092, 1686
Bpu10I CCTNAGC 1 cut(s) 1731
Bpu14I TTCGAA 1 cut(s) 242
BpuEI CTTGAG 3 cut(s) 478, 990, 1584
BpuMI CCSGG 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 519
BsaHI GRCGYC 2 cut(s) 305, 453
BsaJI CCNNGG 3 cut(s) 335, 524, 1200
BsaWI WCCGGW 1 cut(s) 1426
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 806, 1112, 1524
Bse118I RCCGGY 1 cut(s) 1586
Bse1I ACTGG 2 cut(s) 731, 2006
Bse3DI GCAATG 4 cut(s) 30, 119, 1243, 1592
Bse8I GATNNNNATC 1 cut(s) 519
BseAI TCCGGA 1 cut(s) 1426
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 335, 524, 1200
BseGI GGATG 8 cut(s) 763, 1027, 1075, 1501, 1621, 1669, 1787, 1936
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 4 cut(s) 36, 806, 1112, 1524
BseMI GCAATG 4 cut(s) 30, 119, 1243, 1592
BseMII CTCAG 4 cut(s) 617, 684, 825, 1722
BseNI ACTGG 2 cut(s) 731, 2006
BseRI GAGGAG 2 cut(s) 1095, 1967
BseXI GCAGC 2 cut(s) 957, 1684
BseYI CCCAGC 2 cut(s) 234, 1959
BshFI GGCC 2 cut(s) 47, 1665
BsiHKAI GWGCWC 1 cut(s) 1995
BsiSI CCGG 3 cut(s) 335, 1427, 1587
BslFI GGGAC 4 cut(s) 1218, 1343, 1607, 1942
BslI CCNNNNNNNGG 4 cut(s) 36, 806, 1112, 1524
BsmAI GTCTC 1 cut(s) 296
BsmBI CGTCTC 1 cut(s) 296
BsmFI GGGAC 4 cut(s) 1218, 1343, 1607, 1942
BsnI GGCC 2 cut(s) 47, 1665
Bsp119I TTCGAA 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 1995
Bsp13I TCCGGA 1 cut(s) 1426
Bsp143I GATC 3 cut(s) 580, 1048, 1507
BspACI CCGC 6 cut(s) 471, 754, 948, 1233, 1530, 1649
BspANI GGCC 2 cut(s) 47, 1665
BspCNI CTCAG 4 cut(s) 618, 683, 826, 1723
BspEI TCCGGA 1 cut(s) 1426
BspHI TCATGA 1 cut(s) 1501
BspLI GGNNCC 5 cut(s) 114, 1206, 1207, 1331, 1332
BspMAI CTGCAG 1 cut(s) 1552
BspPI GGATC 1 cut(s) 575
BspT104I TTCGAA 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 962
BsrDI GCAATG 4 cut(s) 30, 119, 1243, 1592
BsrFI RCCGGY 1 cut(s) 1586
BsrI ACTGG 2 cut(s) 731, 2006
BssAI RCCGGY 1 cut(s) 1586
BssECI CCNNGG 3 cut(s) 335, 524, 1200
BssMI GATC 3 cut(s) 580, 1048, 1507
BssNI GRCGYC 2 cut(s) 305, 453
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 5 cut(s) 819, 1350, 1392, 1751, 1907
Bst6I CTCTTC 1 cut(s) 1961
BstACI GRCGYC 2 cut(s) 305, 453
BstAFI CTTAAG 1 cut(s) 962
BstAPI GCANNNNNTGC 1 cut(s) 1940
BstBI TTCGAA 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 6 cut(s) 482, 626, 670, 834, 895, 1731
BstENI CCTNNNNNAGG 1 cut(s) 1522
BstF5I GGATG 8 cut(s) 763, 1027, 1075, 1501, 1621, 1669, 1787, 1936
BstKTI GATC 3 cut(s) 583, 1051, 1510
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 580, 1048, 1507
BstMWI GCNNNNNNNGC 6 cut(s) 53, 1142, 1239, 1536, 1940, 1982
BstNI CCWGG 1 cut(s) 526
BstNSI RCATGY 2 cut(s) 449, 1382
BstSCI CCNGG 2 cut(s) 334, 524
BstSFI CTRYAG 3 cut(s) 780, 1353, 1548
BstV1I GCAGC 2 cut(s) 957, 1684
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 2 cut(s) 47, 1665
BtgZI GCGATG 3 cut(s) 69, 966, 1851
BtsCI GGATG 8 cut(s) 763, 1027, 1075, 1501, 1621, 1669, 1787, 1936
BtsIMutI CAGTG 3 cut(s) 1539, 1756, 1912
Cac8I GCNNGC 1 cut(s) 64
CaiI CAGNNNCTG 2 cut(s) 314, 677
CciI TCATGA 1 cut(s) 1501
Cfr10I RCCGGY 1 cut(s) 1586
Cfr13I GGNCC 4 cut(s) 45, 332, 1205, 1330
CseI GACGC 2 cut(s) 89, 313
CspCI CAANNNNNGTGG 2 cut(s) 520, 555
DdeI CTNAG 6 cut(s) 482, 626, 670, 834, 895, 1731
DpnI GATC 3 cut(s) 582, 1050, 1509
DpnII GATC 3 cut(s) 580, 1048, 1507
DrdI GACNNNNNNGTC 1 cut(s) 1550
DriI GACNNNNNGTC 1 cut(s) 1954
DseDI GACNNNNNNGTC 1 cut(s) 1550
Eam1104I CTCTTC 1 cut(s) 1961
Eam1105I GACNNNNNGTC 1 cut(s) 1954
EarI CTCTTC 1 cut(s) 1961
Ecl136II GAGCTC 1 cut(s) 1993
Eco24I GRGCYC 1 cut(s) 1995
Eco47I GGWCC 3 cut(s) 332, 1205, 1330
Eco53kI GAGCTC 1 cut(s) 1993
EcoICRI GAGCTC 1 cut(s) 1993
EcoNI CCTNNNNNAGG 1 cut(s) 1522
EcoO109I RGGNCCY 2 cut(s) 1205, 1330
EcoRII CCWGG 1 cut(s) 524
EcoT22I ATGCAT 1 cut(s) 375
EcoT38I GRGCYC 1 cut(s) 1995
Esp3I CGTCTC 1 cut(s) 296
FalI AAGNNNNNCTT 6 cut(s) 145, 177, 370, 402, 1764, 1796
FaqI GGGAC 4 cut(s) 1218, 1343, 1607, 1942
FauI CCCGC 1 cut(s) 747
FauNDI CATATG 1 cut(s) 1339
FbaI TGATCA 2 cut(s) 1048, 1507
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 4 cut(s) 946, 949, 1234, 1698
FokI GGATG 8 cut(s) 770, 1034, 1062, 1508, 1628, 1656, 1774, 1923
FriOI GRGCYC 1 cut(s) 1995
Fsp4HI GCNGC 4 cut(s) 946, 949, 1234, 1698
GluI GCNGC 4 cut(s) 946, 949, 1234, 1698
GsaI CCCAGC 2 cut(s) 238, 1963
GsuI CTGGAG 2 cut(s) 1092, 1686
HaeIII GGCC 2 cut(s) 47, 1665
HapII CCGG 3 cut(s) 335, 1427, 1587
HgaI GACGC 2 cut(s) 89, 313
Hin1I GRCGYC 2 cut(s) 305, 453
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 64
HpaII CCGG 3 cut(s) 335, 1427, 1587
HphI GGTGA 2 cut(s) 227, 1176
Hpy166II GTNNAC 4 cut(s) 79, 332, 780, 938
Hpy8I GTNNAC 4 cut(s) 79, 332, 780, 938
HpyAV CCTTC 5 cut(s) 234, 657, 878, 1676, 1820
HpyCH4III ACNGT 5 cut(s) 819, 1350, 1392, 1751, 1907
HpyCH4IV ACGT 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 1142, 1239, 1536, 1940, 1982
HpyF3I CTNAG 6 cut(s) 482, 626, 670, 834, 895, 1731
HpySE526I ACGT 1 cut(s) 453
Hsp92I GRCGYC 2 cut(s) 305, 453
KflI GGGWCCC 2 cut(s) 1205, 1330
Kpn2I TCCGGA 1 cut(s) 1426
Ksp22I TGATCA 2 cut(s) 1048, 1507
Kzo9I GATC 3 cut(s) 580, 1048, 1507
LmnI GCTCC 3 cut(s) 118, 1108, 1705
Lsp1109I GCAGC 2 cut(s) 957, 1684
LweI GCATC 9 cut(s) 92, 664, 748, 943, 1190, 1230, 1694, 1796, 1952
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 5 cut(s) 205, 848, 1151, 1442, 1745
MalI GATC 3 cut(s) 582, 1050, 1509
MboI GATC 3 cut(s) 580, 1048, 1507
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 1995
MluCI AATT 8 cut(s) 256, 795, 1013, 1036, 1284, 1308, 1368, 1560
MlyI GAGTC 4 cut(s) 573, 785, 976, 1964
MmeI TCCRAC 2 cut(s) 801, 1374
Mph1103I ATGCAT 1 cut(s) 375
MroI TCCGGA 1 cut(s) 1426
MseI TTAA 7 cut(s) 255, 476, 963, 987, 1176, 1557, 1926
MslI CAYNNNNRTG 4 cut(s) 444, 987, 998, 1278
MspA1I CMGCKG 2 cut(s) 412, 948
MspCI CTTAAG 1 cut(s) 962
MspI CCGG 3 cut(s) 335, 1427, 1587
MspR9I CCNGG 2 cut(s) 336, 526
MvaI CCWGG 1 cut(s) 526
MwoI GCNNNNNNNGC 6 cut(s) 53, 1142, 1239, 1536, 1940, 1982
NciI CCSGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 1339
NdeII GATC 3 cut(s) 580, 1048, 1507
NlaIV GGNNCC 5 cut(s) 114, 1206, 1207, 1331, 1332
NmuCI GTSAC 3 cut(s) 205, 848, 1442
NsiI ATGCAT 1 cut(s) 375
NspI RCATGY 2 cut(s) 449, 1382
NspV TTCGAA 1 cut(s) 242
PagI TCATGA 1 cut(s) 1501
PciI ACATGT 1 cut(s) 1378
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 36
PkrI GCNGC 4 cut(s) 947, 950, 1235, 1699
PleI GAGTC 4 cut(s) 572, 784, 975, 1963
PpsI GAGTC 4 cut(s) 572, 784, 975, 1963
PpuMI RGGWCCY 2 cut(s) 1205, 1330
PscI ACATGT 1 cut(s) 1378
Psp124BI GAGCTC 1 cut(s) 1995
Psp5II RGGWCCY 2 cut(s) 1205, 1330
Psp6I CCWGG 1 cut(s) 524
PspFI CCCAGC 2 cut(s) 234, 1959
PspGI CCWGG 1 cut(s) 524
PspN4I GGNNCC 5 cut(s) 114, 1206, 1207, 1331, 1332
PspPI GGNCC 4 cut(s) 45, 332, 1205, 1330
PspPPI RGGWCCY 2 cut(s) 1205, 1330
PsrI GAACNNNNNNTAC 2 cut(s) 1573, 1605
PstI CTGCAG 1 cut(s) 1552
PstNI CAGNNNCTG 2 cut(s) 314, 677
PsuI RGATCY 1 cut(s) 580
PvuII CAGCTG 1 cut(s) 412
RseI CAYNNNNRTG 4 cut(s) 444, 987, 998, 1278
SacI GAGCTC 1 cut(s) 1995
SaqAI TTAA 7 cut(s) 255, 476, 963, 987, 1176, 1557, 1926
SatI GCNGC 4 cut(s) 946, 949, 1234, 1698
Sau3AI GATC 3 cut(s) 580, 1048, 1507
Sau96I GGNCC 4 cut(s) 45, 332, 1205, 1330
SchI GAGTC 4 cut(s) 573, 785, 976, 1964
ScrFI CCNGG 2 cut(s) 336, 526
SduI GDGCHC 1 cut(s) 1995
SfaNI GCATC 9 cut(s) 92, 664, 748, 943, 1190, 1230, 1694, 1796, 1952
SfcI CTRYAG 3 cut(s) 780, 1353, 1548
SfuI TTCGAA 1 cut(s) 242
SinI GGWCC 3 cut(s) 332, 1205, 1330
SmiMI CAYNNNNRTG 4 cut(s) 444, 987, 998, 1278
SmlI CTYRAG 4 cut(s) 457, 962, 1005, 1599
SmoI CTYRAG 4 cut(s) 457, 962, 1005, 1599
Sse9I AATT 8 cut(s) 256, 795, 1013, 1036, 1284, 1308, 1368, 1560
SsiI CCGC 6 cut(s) 471, 754, 948, 1233, 1530, 1649
SstI GAGCTC 1 cut(s) 1995
StyD4I CCNGG 2 cut(s) 334, 524
TaaI ACNGT 5 cut(s) 819, 1350, 1392, 1751, 1907
TaiI ACGT 1 cut(s) 456
TaqI TCGA 3 cut(s) 192, 242, 422
TasI AATT 8 cut(s) 256, 795, 1013, 1036, 1284, 1308, 1368, 1560
TauI GCSGC 2 cut(s) 951, 1236
Tru1I TTAA 7 cut(s) 255, 476, 963, 987, 1176, 1557, 1926
Tru9I TTAA 7 cut(s) 255, 476, 963, 987, 1176, 1557, 1926
TscAI CASTG 3 cut(s) 1546, 1756, 1912
TseFI GTSAC 3 cut(s) 205, 848, 1442
TseI GCWGC 2 cut(s) 945, 1697
Tsp45I GTSAC 3 cut(s) 205, 848, 1442
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 3 cut(s) 1546, 1756, 1912
Van91I CCANNNNNTGG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 962
VpaK11BI GGWCC 3 cut(s) 332, 1205, 1330
XagI CCTNNNNNAGG 1 cut(s) 1522
XapI RAATTY 5 cut(s) 795, 1013, 1036, 1368, 1560
XceI RCATGY 2 cut(s) 449, 1382
XmiI GTMKAC 1 cut(s) 779
ZraI GACGTC 1 cut(s) 454
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.