Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015150

Physical Location & Seq

Genomic Coordinates Forward (+)

23221514 .. 23222601

Gene Structure 1088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023409

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTATGCACTACCACGCTTCCAGACTTACTCTCACTCTCACTCCCACTCCCACTCACTCTCTGAGTTTCTTCCAAGTCCCTCCATGGAAAACTGCAAAAAATCTCCATTGAAGCCATGGAAGAAAGGCCCTACAAGAGGCAAAGGCGGCCCTCAGAACGCCTCGTGTGAATATCGAGGCGTTCGACAAAGAACCTGGGGTAAATGGGTTGCCGAAATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGTTGGGCTCATTCGCCACGGCCGAAGAAGCTGCCATGGCTTATGATGAAGCTGCCAGGAGACTCTACGGCCCTGATGCTTTTCTCAATCTTCCTCACCTGCAACCCAACTCCTCCAATCCTTCACTCAAATCACAAAAGTTCAAATGGTTCCCTTCCCAGAATTTCATTTCCATGTTTCCTCCTTGTGGAATGCTCAATATTAATGCTCAACCCAGTGTTCATGTCATTCATCAGAGGCTCCAAGAGCTTAAGCAAAATGGGGTTTATGGTCAAACTACTGCTTCCTCTAGTTCATCTTCCTGTGATTCAAAACCTGAGGCTCACACCACAGTGGACAAAACCCCGAAAGAAAATGTAGCCGAGAATAAGGAGAAAGATGTAGAAATTACGTTGGAGAAAGTTGTGGGAGGAAAGGAGGAGAAGCCACAGATTGATCTCAATGAGTTTCTTCAGCAGTTGGGTGTGCTCAAGAGAGACAGACTATCAGAAGAATCCGACACCACAACAAGTTTTGCAGCTCCCGAATCTTCGATTACAGAAACCAATGACGAATTCAGACCATTTGCTGACAAGAATTTCAACTGGGATGAATTGATTGAGATGCATGGAATGGAAGACCAAGGAGCAGAAGCTGGTACCTTTCAAGTTTATGATGTGAACGAAGAGCTGTATTTCCCCACTTCTATTTGGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

316

Amino Acids

35.76

Weight (kDa)

6.03

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	57 - 106	1.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57600
fragaria_vesca	FvH4_6g23290
malus_domestica	MD12G1067600.v1.1
prunus_persica	Prupe.7G066700_v2.0.a1
pyrus_communis	pycom12g05990 pycom14g05600
rosa_chinensis	RchiOBHm_Chr3g0481251
rosa_laevigata	RLG00000023409
rosa_multiflora	Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_6G00400570
rosa_rugosa	Rorug03G0190600
rosa_samantha	Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana	Rw3G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	354
Acc36I	ACCTGC	1 cut(s)	354
Acc65I	GGTACC	1 cut(s)	884
AccB1I	GGYRCC	1 cut(s)	884
AccB7I	CCANNNNNTGG	1 cut(s)	246
AciI	CCGC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	3 cut(s)	409, 800, 823
AcuI	CTGAAG	1 cut(s)	683
AfaI	GTAC	1 cut(s)	886
AfiI	CCNNNNNNNGG	3 cut(s)	137, 246, 434
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	112, 391, 558, 829, 893
AjnI	CCWGG	3 cut(s)	194, 239, 302
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AleI	CACNNNNGTG	1 cut(s)	578
AluBI	AGCT	6 cut(s)	278, 299, 496, 767, 881, 916
AluI	AGCT	6 cut(s)	278, 299, 496, 767, 881, 916
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	2 cut(s)	301, 717
AlwNI	CAGNNNCTG	2 cut(s)	246, 881
AoxI	GGCC	4 cut(s)	127, 148, 267, 316
ApeKI	GCWGC	3 cut(s)	278, 299, 764
ApoI	RAATTY	3 cut(s)	409, 800, 823
AseI	ATTAAT	1 cut(s)	450
Asp718I	GGTACC	1 cut(s)	884
AspS9I	GGNCC	3 cut(s)	128, 149, 317
AsuHPI	GGTGA	1 cut(s)	335
AxyI	CCTNAGG	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	884
BanII	GRGCYC	1 cut(s)	257
BauI	CACGAG	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	870
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	3 cut(s)	265, 286, 776
BceAI	ACGGC	2 cut(s)	282, 331
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	3 cut(s)	196, 241, 304
BcoDI	GTCTC	2 cut(s)	301, 717
BfaI	CTAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	354
BisI	GCNGC	4 cut(s)	148, 279, 300, 765
BlsI	GCNGC	4 cut(s)	149, 280, 301, 766
Bme1390I	CCNGG	3 cut(s)	196, 241, 304
BmgT120I	GGNCC	3 cut(s)	128, 149, 317
BmiI	GGNNCC	3 cut(s)	398, 488, 886
BmrFI	CCNGG	3 cut(s)	196, 241, 304
BmrI	ACTGGG	2 cut(s)	456, 841
BmsI	GCATC	2 cut(s)	313, 840
BmuI	ACTGGG	2 cut(s)	456, 841
BpiI	GAAGAC	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	701
BsaJI	CCNNGG	6 cut(s)	84, 116, 195, 264, 282, 868
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 32, 56, 62
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 246, 434
Bse1I	ACTGG	2 cut(s)	462, 836
Bse21I	CCTNAGG	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	196, 241, 304
BseDI	CCNNGG	6 cut(s)	84, 116, 195, 264, 282, 868
BseGI	GGATG	1 cut(s)	841
BseLI	CCNNNNNNNGG	3 cut(s)	137, 246, 434
BseMII	CTCAG	3 cut(s)	54, 167, 555
BseNI	ACTGG	2 cut(s)	462, 836
BseRI	GAGGAG	2 cut(s)	349, 680
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	265, 286, 776
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	4 cut(s)	129, 150, 269, 318
BshNI	GGYRCC	1 cut(s)	884
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	717
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	137, 246, 434
BsmAI	GTCTC	2 cut(s)	301, 717
BsmFI	GGGAC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	4 cut(s)	129, 150, 269, 318
Bsp1286I	GDGCHC	2 cut(s)	257, 717
Bsp143I	GATC	1 cut(s)	682
Bsp19I	CCATGG	3 cut(s)	84, 116, 282
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	4 cut(s)	129, 150, 269, 318
BspCNI	CTCAG	3 cut(s)	55, 166, 556
BspLI	GGNNCC	3 cut(s)	398, 488, 886
BspMI	ACCTGC	1 cut(s)	354
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	1 cut(s)	884
BspTI	CTTAAG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	462, 836
BssECI	CCNNGG	6 cut(s)	84, 116, 195, 264, 282, 868
BssMI	GATC	1 cut(s)	682
BssSI	CACGAG	1 cut(s)	163
BssT1I	CCWWGG	4 cut(s)	84, 116, 282, 868
Bst2BI	CACGAG	1 cut(s)	163
Bst2UI	CCWGG	3 cut(s)	196, 241, 304
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	2 cut(s)	227, 906
BstAFI	CTTAAG	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	63, 153, 564
BstDSI	CCRYGG	4 cut(s)	84, 116, 264, 282
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	841
BstKTI	GATC	1 cut(s)	685
BstMAI	GTCTC	2 cut(s)	301, 717
BstMBI	GATC	1 cut(s)	682
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 275, 284, 493
BstNI	CCWGG	3 cut(s)	196, 241, 304
BstSCI	CCNGG	3 cut(s)	194, 239, 302
BstV1I	GCAGC	3 cut(s)	265, 286, 776
BstV2I	GAAGAC	1 cut(s)	870
BstZI	CGGCCG	1 cut(s)	267
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	4 cut(s)	129, 150, 269, 318
BtgI	CCRYGG	4 cut(s)	84, 116, 264, 282
BtsCI	GGATG	1 cut(s)	841
BtsIMutI	CAGTG	2 cut(s)	469, 585
BveI	ACCTGC	1 cut(s)	354
CaiI	CAGNNNCTG	2 cut(s)	246, 881
Cfr13I	GGNCC	3 cut(s)	128, 149, 317
Csp6I	GTAC	1 cut(s)	885
CviAII	CATG	6 cut(s)	85, 117, 283, 421, 470, 854
CviQI	GTAC	1 cut(s)	885
DdeI	CTNAG	3 cut(s)	63, 153, 564
DpnI	GATC	1 cut(s)	684
DpnII	GATC	1 cut(s)	682
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	227, 906
EarI	CTCTTC	2 cut(s)	227, 906
EclXI	CGGCCG	1 cut(s)	267
Eco130I	CCWWGG	4 cut(s)	84, 116, 282, 868
Eco24I	GRGCYC	1 cut(s)	257
Eco52I	CGGCCG	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	683
Eco81I	CCTNAGG	1 cut(s)	564
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	3 cut(s)	194, 239, 302
EcoT14I	CCWWGG	4 cut(s)	84, 116, 282, 868
EcoT22I	ATGCAT	1 cut(s)	855
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	4 cut(s)	84, 116, 282, 868
FaeI	CATG	6 cut(s)	88, 120, 286, 424, 473, 857
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	6 cut(s)	84, 116, 282, 420, 469, 853
Fnu4HI	GCNGC	4 cut(s)	148, 279, 300, 765
FokI	GGATG	1 cut(s)	848
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	4 cut(s)	148, 279, 300, 765
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	4 cut(s)	148, 279, 300, 765
HaeIII	GGCC	4 cut(s)	129, 150, 269, 318
Hin1II	CATG	6 cut(s)	88, 120, 286, 424, 473, 857
HinfI	GANTC	4 cut(s)	309, 554, 740, 773
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	583, 907
Hpy188I	TCNGA	8 cut(s)	64, 156, 221, 483, 736, 745, 806, 947
Hpy188III	TCNNGA	3 cut(s)	22, 718, 770
Hpy8I	GTNNAC	2 cut(s)	583, 907
HpyAV	CCTTC	2 cut(s)	378, 411
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	638
HpyCH4V	TGCA	5 cut(s)	8, 96, 349, 764, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 275, 284, 493
HpyF3I	CTNAG	3 cut(s)	63, 153, 564
HpySE526I	ACGT	1 cut(s)	638
Hsp92II	CATG	6 cut(s)	88, 120, 286, 424, 473, 857
KpnI	GGTACC	1 cut(s)	888
Kzo9I	GATC	1 cut(s)	682
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	3 cut(s)	492, 772, 872
Lsp1109I	GCAGC	3 cut(s)	265, 286, 776
LweI	GCATC	2 cut(s)	313, 840
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	638
MalI	GATC	1 cut(s)	684
MboI	GATC	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	257, 717
MluCI	AATT	5 cut(s)	409, 633, 800, 823, 839
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	2 cut(s)	621, 768
Mph1103I	ATGCAT	1 cut(s)	855
MseI	TTAA	2 cut(s)	450, 498
MslI	CAYNNNNRTG	2 cut(s)	419, 578
MspCI	CTTAAG	1 cut(s)	497
MspR9I	CCNGG	3 cut(s)	196, 241, 304
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	3 cut(s)	196, 241, 304
MwoI	GCNNNNNNNGC	4 cut(s)	147, 275, 284, 493
NcoI	CCATGG	3 cut(s)	84, 116, 282
NdeII	GATC	1 cut(s)	682
NlaIII	CATG	6 cut(s)	88, 120, 286, 424, 473, 857
NlaIV	GGNNCC	3 cut(s)	398, 488, 886
NmeAIII	GCCGAG	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	855
OliI	CACNNNNGTG	1 cut(s)	578
PaqCI	CACCTGC	1 cut(s)	354
PciSI	GCTCTTC	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	2 cut(s)	181, 267
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	554, 740, 773
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	149, 280, 301, 766
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
PshBI	ATTAAT	1 cut(s)	450
Psp6I	CCWGG	3 cut(s)	194, 239, 302
PspGI	CCWGG	3 cut(s)	194, 239, 302
PspN4I	GGNNCC	3 cut(s)	398, 488, 886
PspPI	GGNCC	3 cut(s)	128, 149, 317
PstNI	CAGNNNCTG	2 cut(s)	246, 881
RsaI	GTAC	1 cut(s)	886
RsaNI	GTAC	1 cut(s)	885
RseI	CAYNNNNRTG	2 cut(s)	419, 578
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	2 cut(s)	450, 498
SatI	GCNGC	4 cut(s)	148, 279, 300, 765
Sau3AI	GATC	1 cut(s)	682
Sau96I	GGNCC	3 cut(s)	128, 149, 317
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	3 cut(s)	196, 241, 304
SduI	GDGCHC	2 cut(s)	257, 717
SfaNI	GCATC	2 cut(s)	313, 840
SmiMI	CAYNNNNRTG	2 cut(s)	419, 578
SmlI	CTYRAG	2 cut(s)	497, 716
SmoI	CTYRAG	2 cut(s)	497, 716
Sse9I	AATT	5 cut(s)	409, 633, 800, 823, 839
SsiI	CCGC	1 cut(s)	147
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	3 cut(s)	194, 239, 302
StyI	CCWWGG	4 cut(s)	84, 116, 282, 868
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	641
TaqI	TCGA	3 cut(s)	175, 184, 779
TasI	AATT	5 cut(s)	409, 633, 800, 823, 839
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	3 cut(s)	554, 740, 773
Tru1I	TTAA	2 cut(s)	450, 498
Tru9I	TTAA	2 cut(s)	450, 498
TscAI	CASTG	2 cut(s)	469, 585
TseI	GCWGC	3 cut(s)	278, 299, 764
TspDTI	ATGAA	6 cut(s)	309, 403, 458, 467, 531, 852
TspRI	CASTG	2 cut(s)	469, 585
Van91I	CCANNNNNTGG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	497
VspI	ATTAAT	1 cut(s)	450
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	3 cut(s)	409, 800, 823
XcmI	CCANNNNNNNNNTGG	2 cut(s)	114, 247
XspI	CTAG	1 cut(s)	537
Zsp2I	ATGCAT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.