Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015150

Physical Location & Seq

Genomic Coordinates Reverse (-)

5398422 .. 5398763

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTGACAAACCCAAAATACAAAATGTTCCAGAGAAGGAGAAAGATGTCGAGTTTCATCTGAAAACCAGCAGAAGACCACCAGGAGAAGCCACGGTTGATCTCAATGAGTTTCTTCAGCAGCTGGGGGGGTACTGGAAAAGGAGAGAATCAGAGGCGACTGAGAAAACAGAAACTTTCATAGCTCCGGAATCTTCGATCGGAGAAGTTCATGATGAATTCGGACCCTTTGCTGACAAGAATATCAATTGGGATGCGTTGATTGAGATGCATAGGATTTCAAACCAAGGACCTTGTTTACCAGATGGAAGAGTAGAACCTGCTTTTGCGGGAGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

114

Amino Acids

12.84

Weight (kDa)

5.07

Isoelectric Point (pI)

65.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57600
fragaria_vesca	FvH4_6g23290
malus_domestica	MD12G1067600.v1.1
prunus_persica	Prupe.7G066700_v2.0.a1
pyrus_communis	pycom12g05990 pycom14g05600
rosa_chinensis	RchiOBHm_Chr3g0481251
rosa_laevigata	RLG00000023409
rosa_multiflora	Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_6G00400570
rosa_rugosa	Rorug03G0190600
rosa_samantha	Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana	Rw3G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	282
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	124, 185
AluI	AGCT	2 cut(s)	124, 185
AlwNI	CAGNNNCTG	1 cut(s)	124
Aor13HI	TCCGGA	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	224, 290
AvaII	GGWCC	2 cut(s)	224, 290
BbsI	GAAGAC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	2 cut(s)	224, 290
BmgT120I	GGNCC	2 cut(s)	224, 290
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	244, 258
BpiI	GAAGAC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	93, 286
BsaWI	WCCGGW	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	140
BseAI	TCCGGA	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	93, 286
BseGI	GGATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	188
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	100, 198
BspACI	CCGC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	154
BspEI	TCCGGA	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	93, 286
BssMI	GATC	2 cut(s)	100, 198
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	103, 201
BstMBI	GATC	2 cut(s)	100, 198
BstMCI	CGRYCG	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	82
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	259
BveI	ACCTGC	1 cut(s)	328
CaiI	CAGNNNCTG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	224, 290
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	3 cut(s)	92, 124, 185
CviKI_1	RGCY	3 cut(s)	92, 124, 185
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	102, 200
DpnII	GATC	2 cut(s)	100, 198
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	224, 290
Eco57I	CTGAAG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	215
FaiI	YATR	3 cut(s)	182, 213, 273
FatI	CATG	1 cut(s)	211
FauI	CCCGC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	122
GluI	GCNGC	1 cut(s)	122
GsaI	CCCAGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	2 cut(s)	149, 191
HpaII	CCGG	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	63, 154, 203, 224
Hpy188III	TCNNGA	3 cut(s)	32, 188, 212
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	100, 198
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	9 cut(s)	45, 69, 82, 96, 110, 121, 201, 315, 333
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	2 cut(s)	244, 258
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	2 cut(s)	102, 200
MboI	GATC	2 cut(s)	100, 198
MboII	GAAGA	4 cut(s)	87, 107, 186, 321
MfeI	CAATTG	1 cut(s)	247
MluCI	AATT	2 cut(s)	218, 247
MnlI	CCTC	1 cut(s)	148
Mph1103I	ATGCAT	1 cut(s)	273
MroI	TCCGGA	1 cut(s)	187
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	100, 198
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	273
PagI	TCATGA	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	149, 191
PkrI	GCNGC	1 cut(s)	123
Ple19I	CGATCG	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	224, 290
PspPPI	RGGWCCY	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	2 cut(s)	100, 198
Sau96I	GGNCC	2 cut(s)	224, 290
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	4 cut(s)	126, 187, 295, 322
SfaNI	GCATC	2 cut(s)	244, 258
SinI	GGWCC	2 cut(s)	224, 290
Sse9I	AATT	2 cut(s)	218, 247
SsiI	CCGC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	51, 197
TasI	AATT	2 cut(s)	218, 247
TfiI	GAWTC	2 cut(s)	149, 191
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	4 cut(s)	47, 169, 200, 231
VpaK11BI	GGWCC	2 cut(s)	224, 290
XapI	RAATTY	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.