Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015150

Physical Location & Seq

Genomic Coordinates Reverse (-)

17276547 .. 17277407

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGACAACTTGAGGAAATCTCCATTGAAGCCATGGAAGAAAGGCCCTACAAGAGGCAAAGGTGGCCCTCAGAACGCCTCGTGTGAGTATCGAGGCGTTCGACAGAGAACTTGGGGCAAATGGGTTGCGGAAATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGTTGGGCTCATTCGCCACCGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCCAGGAGACTCTATGGCCCTGATGCTTTTCTCAATCTTCCTCACCTGCAATCCAACTCTTCCAACCTTCCACTTAAGTCTCAAAAGTTCAAATGGTTCCCTTCCCAAAATTTCATTTCCATGTTTCCTCCTTGTGGAATGCTCAACATCAATGCCCAGCCAAGTGTTCATGTCATTCATCAGAGGCTCCAAGAGCTTAAGCAAAATGGGGTTTTTGGTCAAACTACTCCTTCCTCTAGTTCATCTTCCTGTGACTCAAAACCTGAGGCTCACGTCACCATGGAAAAAGCCCAGAAAGAAAATGTAGCAGAGAATAAGGAGAAAGACGTAGAAATTACGTCGGAGAAAGTTGTGGGAGGACTGGAGGAGAAGCCACAGATAGATCTCAATGAGTTTCTTCAGCAGCTAGGTGTGCTGAAGAATGAGAGACAATCAGAAGAATCCGACACCACAAGTTTTGCAGCTCCAGAATCTTCCATTACAGAAACTAGTGATGGATTTGGACCCTTTGCTGACAAGAATTTCAACTGGGACGCATTGATTGAGATGCATGCAATGGAAAATCAAGGAGCAGAAACTGGTACTTTTCATATTTATGATGTGAACGAAGAGCTGTCTTTCCCCACTTCCATTTGGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

287

Amino Acids

32.22

Weight (kDa)

5.78

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	29 - 78	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57600
fragaria_vesca	FvH4_6g23290
malus_domestica	MD12G1067600.v1.1
prunus_persica	Prupe.7G066700_v2.0.a1
pyrus_communis	pycom12g05990 pycom14g05600
rosa_chinensis	RchiOBHm_Chr3g0481251
rosa_laevigata	RLG00000023409
rosa_multiflora	Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii	Rroxscaffold_6G00400570
rosa_rugosa	Rorug03G0190600
rosa_samantha	Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana	Rw3G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	2 cut(s)	128, 183
AcsI	RAATTY	2 cut(s)	325, 736
AcuI	CTGAAG	3 cut(s)	207, 599, 653
AfaI	GTAC	1 cut(s)	799
AfiI	CCNNNNNNNGG	3 cut(s)	53, 162, 350
AflII	CTTAAG	2 cut(s)	290, 413
AgsI	TTSAA	3 cut(s)	28, 307, 742
AhlI	ACTAGT	1 cut(s)	704
AjiI	CACGTC	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	155, 218
AluBI	AGCT	5 cut(s)	194, 412, 622, 680, 829
AluI	AGCT	5 cut(s)	194, 412, 622, 680, 829
Alw26I	GTCTC	3 cut(s)	217, 300, 637
AlwNI	CAGNNNCTG	2 cut(s)	162, 794
AoxI	GGCC	3 cut(s)	43, 64, 232
ApeKI	GCWGC	4 cut(s)	194, 215, 619, 677
ApoI	RAATTY	2 cut(s)	325, 736
AspS9I	GGNCC	4 cut(s)	44, 65, 233, 719
AsuHPI	GGTGA	2 cut(s)	251, 484
AvaII	GGWCC	1 cut(s)	719
AxyI	CCTNAGG	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	79
BbvI	GCAGC	4 cut(s)	181, 202, 631, 689
BccI	CCATC	1 cut(s)	704
BciT130I	CCWGG	2 cut(s)	157, 220
BcoDI	GTCTC	3 cut(s)	217, 300, 637
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	3 cut(s)	453, 623, 705
BfrI	CTTAAG	2 cut(s)	290, 413
BfuAI	ACCTGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	4 cut(s)	195, 216, 620, 678
BlsI	GCNGC	4 cut(s)	196, 217, 621, 679
Bme1390I	CCNGG	2 cut(s)	157, 220
Bme18I	GGWCC	1 cut(s)	719
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	4 cut(s)	44, 65, 233, 719
BmiI	GGNNCC	3 cut(s)	314, 404, 721
BmrFI	CCNGG	2 cut(s)	157, 220
BmrI	ACTGGG	1 cut(s)	754
BmsI	GCATC	2 cut(s)	229, 753
BmuI	ACTGGG	1 cut(s)	754
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	2 cut(s)	599, 666
BpuEI	CTTGAG	1 cut(s)	31
BsaJI	CCNNGG	3 cut(s)	32, 198, 495
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 162, 350
Bse1I	ACTGG	3 cut(s)	582, 749, 799
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	157, 220
BseDI	CCNNGG	3 cut(s)	32, 198, 495
BseLI	CCNNNNNNNGG	3 cut(s)	53, 162, 350
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	2 cut(s)	83, 471
BseNI	ACTGG	3 cut(s)	582, 749, 799
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	4 cut(s)	181, 202, 631, 689
BseYI	CCCAGC	1 cut(s)	372
BshFI	GGCC	3 cut(s)	45, 66, 234
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	3 cut(s)	53, 162, 350
BsmAI	GTCTC	3 cut(s)	217, 300, 637
BsmFI	GGGAC	1 cut(s)	761
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	45, 66, 234
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	598
Bsp19I	CCATGG	3 cut(s)	32, 198, 495
BspACI	CCGC	2 cut(s)	128, 183
BspANI	GGCC	3 cut(s)	45, 66, 234
BspCNI	CTCAG	2 cut(s)	82, 472
BspLI	GGNNCC	3 cut(s)	314, 404, 721
BspMI	ACCTGC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	819
BspTI	CTTAAG	2 cut(s)	290, 413
BsrDI	GCAATG	1 cut(s)	777
BsrI	ACTGG	3 cut(s)	582, 749, 799
BssECI	CCNNGG	3 cut(s)	32, 198, 495
BssMI	GATC	1 cut(s)	598
BssSI	CACGAG	1 cut(s)	79
BssT1I	CCWWGG	3 cut(s)	32, 198, 495
Bst2BI	CACGAG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	157, 220
Bst6I	CTCTTC	3 cut(s)	143, 280, 819
BstAFI	CTTAAG	2 cut(s)	290, 413
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	2 cut(s)	69, 480
BstDSI	CCRYGG	3 cut(s)	32, 198, 495
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	3 cut(s)	217, 300, 637
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 191, 200, 409, 628
BstNI	CCWGG	2 cut(s)	157, 220
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	2 cut(s)	155, 218
BstV1I	GCAGC	4 cut(s)	181, 202, 631, 689
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	45, 66, 234
BtgI	CCRYGG	3 cut(s)	32, 198, 495
BtrI	CACGTC	1 cut(s)	490
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	768
CaiI	CAGNNNCTG	2 cut(s)	162, 794
Cfr13I	GGNCC	4 cut(s)	44, 65, 233, 719
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	1 cut(s)	798
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	6 cut(s)	33, 199, 337, 386, 496, 767
CviQI	GTAC	1 cut(s)	798
DdeI	CTNAG	2 cut(s)	69, 480
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
Eam1104I	CTCTTC	3 cut(s)	143, 280, 819
EarI	CTCTTC	3 cut(s)	143, 280, 819
Eco130I	CCWWGG	3 cut(s)	32, 198, 495
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	719
Eco57I	CTGAAG	3 cut(s)	207, 599, 653
Eco81I	CCTNAGG	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	155, 218
EcoT14I	CCWWGG	3 cut(s)	32, 198, 495
EcoT22I	ATGCAT	1 cut(s)	768
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	3 cut(s)	32, 198, 495
FaeI	CATG	6 cut(s)	36, 202, 340, 389, 499, 770
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	6 cut(s)	32, 198, 336, 385, 495, 766
Fnu4HI	GCNGC	4 cut(s)	195, 216, 620, 678
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	195, 216, 620, 678
FspBI	CTAG	3 cut(s)	453, 623, 705
GluI	GCNGC	4 cut(s)	195, 216, 620, 678
GsaI	CCCAGC	1 cut(s)	376
GsuI	CTGGAG	2 cut(s)	599, 666
HaeIII	GGCC	3 cut(s)	45, 66, 234
HgaI	GACGC	1 cut(s)	758
Hin1II	CATG	6 cut(s)	36, 202, 340, 389, 499, 770
HinfI	GANTC	4 cut(s)	225, 470, 656, 686
HphI	GGTGA	2 cut(s)	251, 484
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	7 cut(s)	72, 137, 399, 559, 652, 661, 860
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	1 cut(s)	820
Hpy99I	CGWCG	1 cut(s)	559
HpyAV	CCTTC	3 cut(s)	293, 327, 456
HpyCH4IV	ACGT	3 cut(s)	489, 543, 554
HpyCH4V	TGCA	4 cut(s)	265, 677, 766, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 191, 200, 409, 628
HpyF3I	CTNAG	2 cut(s)	69, 480
HpySE526I	ACGT	3 cut(s)	489, 543, 554
Hsp92II	CATG	6 cut(s)	36, 202, 340, 389, 499, 770
Kzo9I	GATC	1 cut(s)	598
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	3 cut(s)	408, 685, 785
Lsp1109I	GCAGC	4 cut(s)	181, 202, 631, 689
LweI	GCATC	2 cut(s)	229, 753
MaeI	CTAG	3 cut(s)	453, 623, 705
MaeII	ACGT	3 cut(s)	489, 543, 554
MaeIII	GTNAC	2 cut(s)	467, 490
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	3 cut(s)	325, 549, 736
MlyI	GAGTC	2 cut(s)	219, 464
MmeI	TCCRAC	4 cut(s)	294, 303, 537, 684
Mph1103I	ATGCAT	1 cut(s)	768
MseI	TTAA	2 cut(s)	291, 414
MslI	CAYNNNNRTG	2 cut(s)	335, 810
MspA1I	CMGCKG	1 cut(s)	185
MspCI	CTTAAG	2 cut(s)	290, 413
MspR9I	CCNGG	2 cut(s)	157, 220
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	2 cut(s)	157, 220
MwoI	GCNNNNNNNGC	5 cut(s)	63, 191, 200, 409, 628
NcoI	CCATGG	3 cut(s)	32, 198, 495
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	6 cut(s)	36, 202, 340, 389, 499, 770
NlaIV	GGNNCC	3 cut(s)	314, 404, 721
NmuCI	GTSAC	2 cut(s)	467, 490
NsiI	ATGCAT	1 cut(s)	768
NspI	RCATGY	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	770
PaqCI	CACCTGC	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	819
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	656, 686
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	4 cut(s)	196, 217, 621, 679
PleI	GAGTC	2 cut(s)	219, 464
PpsI	GAGTC	2 cut(s)	219, 464
Psp6I	CCWGG	2 cut(s)	155, 218
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	2 cut(s)	155, 218
PspN4I	GGNNCC	3 cut(s)	314, 404, 721
PspPI	GGNCC	4 cut(s)	44, 65, 233, 719
PstNI	CAGNNNCTG	2 cut(s)	162, 794
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	1 cut(s)	799
RsaNI	GTAC	1 cut(s)	798
RseI	CAYNNNNRTG	2 cut(s)	335, 810
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	2 cut(s)	291, 414
SatI	GCNGC	4 cut(s)	195, 216, 620, 678
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	4 cut(s)	44, 65, 233, 719
SchI	GAGTC	2 cut(s)	219, 464
ScrFI	CCNGG	2 cut(s)	157, 220
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	229, 753
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	335, 810
SmlI	CTYRAG	3 cut(s)	10, 290, 413
SmoI	CTYRAG	3 cut(s)	10, 290, 413
SpeI	ACTAGT	1 cut(s)	704
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	3 cut(s)	325, 549, 736
SsiI	CCGC	2 cut(s)	128, 183
SspMI	CTAG	3 cut(s)	453, 623, 705
StyD4I	CCNGG	2 cut(s)	155, 218
StyI	CCWWGG	3 cut(s)	32, 198, 495
TaiI	ACGT	3 cut(s)	492, 546, 557
TaqI	TCGA	2 cut(s)	91, 100
TasI	AATT	3 cut(s)	325, 549, 736
TfiI	GAWTC	2 cut(s)	656, 686
Tru1I	TTAA	2 cut(s)	291, 414
Tru9I	TTAA	2 cut(s)	291, 414
TseFI	GTSAC	2 cut(s)	467, 490
TseI	GCWGC	4 cut(s)	194, 215, 619, 677
Tsp45I	GTSAC	2 cut(s)	467, 490
TspDTI	ATGAA	5 cut(s)	319, 374, 383, 447, 794
Van91I	CCANNNNNTGG	1 cut(s)	162
Vha464I	CTTAAG	2 cut(s)	290, 413
VpaK11BI	GGWCC	1 cut(s)	719
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	2 cut(s)	325, 736
XceI	RCATGY	1 cut(s)	770
XcmI	CCANNNNNNNNNTGG	2 cut(s)	30, 163
XspI	CTAG	3 cut(s)	453, 623, 705
Zsp2I	ATGCAT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.