Rh3CG272100

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015150
Physical Location & Seq
Reverse (-)
26970795 .. 26972048
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG272100.1

Sequence Viewer

Length: 942 bp
ATGTGTGCACTACCAAGCTTCCAGACTCACTCTCACTCTTACTCCCACTCACTCTCTGAGTTTCTTCCAAGTCCCTCCATGGAAAACTGCAGAAAATCTCCATTGAAGCCATGGAAGAAAGGCCCTACAAGAGGCAAAGGCGGCCCTCAGAACGCTTCGTGTGAATATCGAGGCGTTCGACAAAGAACTTGGGGTAAATGGGTTGCCGAAATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGTTGGGCTCATTCGCCACGGCCGAAGAAGCTGCCATGGCTTATGATGAGGCTGCCAGGAGACTCTACGGTCCTGATGCTTTTCTCAATCTTCCTCACCTGCAACCCAACTCCTCCAATCCTTCACTCAAATCACAAAAGTTCAAATGGTTTCCTTCCCAGAATTTCATTTCCATGTTTCCTCCTTGTGGAATGCTCAATATTAATGCTCAACCAAGTGTTCATGTCATTCATCAGAGGCTCCAAGAGCTTAAGCAAAATGGGGTTTATGGTCAAACTACTCCCTCCTCTAGTTCATCTTCCTGTGATTCAAAACCTGAGGCTCACACCACAATGGACAAAACCCCGAAAGAAAATGTAGCAGAGAATAAGGAGAAAGATGTAGAAATTACGTTGGAGAAAGTTGTGGGAGGAAGGGAGGAGAAGCCACAGATTGATCTCAATGAGTTTCTTCAGCAGTTGGGTGTGCTCAAGAGAGAGAGACAATCAGAAGAATCCGACACCACAACAAGTTTTGCAGCTCCCGAATCTTCGATTACAGAAACCAGTGACGAATTCGGACCCTTCGCTGACAAGAATTTCAACTGGGATGCATTGATTGAGATGCATGGAATGGAAGACCAAGGAGCAGAAGCTGGTACCTTTCAAGTTTATGATGTGAACGAAGAGCTGTATTTCCCCACTTCTATTTGGAACTTCTGA

Protein Analysis

313

Amino Acids

35.36

Weight (kDa)

5.83

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 55 - 104 1.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015150)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57600
fragaria_vesca FvH4_6g23290
malus_domestica MD12G1067600.v1.1
prunus_persica Prupe.7G066700_v2.0.a1
pyrus_communis pycom12g05990 pycom14g05600
rosa_chinensis RchiOBHm_Chr3g0481251
rosa_laevigata RLG00000023409
rosa_multiflora Rmu_co8499509.1_g000001 Rmu_sc0000064.1_g000006
rosa_roxburghii Rroxscaffold_6G00400570
rosa_rugosa Rorug03G0190600
rosa_samantha Rh3AG241500 Rh3CG272100 Rh3DG268500
rosa_wichuraiana Rw3G021570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 348
AasI GACNNNNNNGTC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 348
Acc65I GGTACC 1 cut(s) 878
AccB1I GGYRCC 1 cut(s) 878
AccB7I CCANNNNNTGG 1 cut(s) 240
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 3 cut(s) 403, 794, 817
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 1 cut(s) 880
AfiI CCNNNNNNNGG 3 cut(s) 131, 240, 428
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 5 cut(s) 106, 385, 552, 823, 887
AjnI CCWGG 2 cut(s) 233, 296
AluBI AGCT 6 cut(s) 18, 272, 490, 761, 875, 910
AluI AGCT 6 cut(s) 18, 272, 490, 761, 875, 910
Alw21I GWGCWC 2 cut(s) 10, 711
Alw26I GTCTC 2 cut(s) 295, 715
Alw44I GTGCAC 1 cut(s) 6
AlwNI CAGNNNCTG 2 cut(s) 240, 875
AoxI GGCC 3 cut(s) 121, 142, 261
ApaLI GTGCAC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 272, 293, 758
ApoI RAATTY 3 cut(s) 403, 794, 817
AseI ATTAAT 1 cut(s) 444
Asp718I GGTACC 1 cut(s) 878
AspS9I GGNCC 4 cut(s) 122, 143, 311, 800
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 2 cut(s) 311, 800
AxyI CCTNAGG 1 cut(s) 558
BaeGI GKGCMC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 878
BanII GRGCYC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 864
Bbv12I GWGCWC 2 cut(s) 10, 711
BbvI GCAGC 3 cut(s) 259, 280, 770
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 2 cut(s) 235, 298
BcoDI GTCTC 2 cut(s) 295, 715
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 88
BfrI CTTAAG 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 4 cut(s) 142, 273, 294, 759
BlsI GCNGC 4 cut(s) 143, 274, 295, 760
Bme1390I CCNGG 2 cut(s) 235, 298
Bme18I GGWCC 2 cut(s) 311, 800
BmgT120I GGNCC 4 cut(s) 122, 143, 311, 800
BmiI GGNNCC 3 cut(s) 482, 802, 880
BmrFI CCNGG 2 cut(s) 235, 298
BmrI ACTGGG 1 cut(s) 835
BmsI GCATC 3 cut(s) 307, 820, 834
BmuI ACTGGG 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 695
BsaJI CCNNGG 5 cut(s) 78, 110, 258, 276, 862
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 240, 428
Bse1I ACTGG 2 cut(s) 786, 830
Bse21I CCTNAGG 1 cut(s) 558
BseBI CCWGG 2 cut(s) 235, 298
BseDI CCNNGG 5 cut(s) 78, 110, 258, 276, 862
BseGI GGATG 1 cut(s) 835
BseLI CCNNNNNNNGG 3 cut(s) 131, 240, 428
BseMII CTCAG 3 cut(s) 48, 161, 549
BseNI ACTGG 2 cut(s) 786, 830
BseRI GAGGAG 3 cut(s) 343, 517, 674
BseSI GKGCMC 1 cut(s) 10
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 3 cut(s) 259, 280, 770
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 3 cut(s) 123, 144, 263
BshNI GGYRCC 1 cut(s) 878
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 10, 711
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 3 cut(s) 131, 240, 428
BsmAI GTCTC 2 cut(s) 295, 715
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 3 cut(s) 123, 144, 263
Bsp1286I GDGCHC 3 cut(s) 10, 251, 711
Bsp143I GATC 1 cut(s) 676
Bsp19I CCATGG 3 cut(s) 78, 110, 276
BspACI CCGC 1 cut(s) 141
BspANI GGCC 3 cut(s) 123, 144, 263
BspCNI CTCAG 3 cut(s) 49, 160, 550
BspLI GGNNCC 3 cut(s) 482, 802, 880
BspMAI CTGCAG 1 cut(s) 92
BspMI ACCTGC 1 cut(s) 348
BspQI GCTCTTC 1 cut(s) 900
BspT107I GGYRCC 1 cut(s) 878
BspTI CTTAAG 1 cut(s) 491
BsrI ACTGG 2 cut(s) 786, 830
BssECI CCNNGG 5 cut(s) 78, 110, 258, 276, 862
BssMI GATC 1 cut(s) 676
BssT1I CCWWGG 4 cut(s) 78, 110, 276, 862
Bst2UI CCWGG 2 cut(s) 235, 298
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 2 cut(s) 221, 900
BstAFI CTTAAG 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 57, 147, 558
BstDSI CCRYGG 4 cut(s) 78, 110, 258, 276
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 835
BstKTI GATC 1 cut(s) 679
BstMAI GTCTC 2 cut(s) 295, 715
BstMBI GATC 1 cut(s) 676
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 4 cut(s) 141, 269, 278, 487
BstNI CCWGG 2 cut(s) 235, 298
BstSCI CCNGG 2 cut(s) 233, 296
BstSFI CTRYAG 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 10
BstV1I GCAGC 3 cut(s) 259, 280, 770
BstV2I GAAGAC 1 cut(s) 864
BstZI CGGCCG 1 cut(s) 261
Bsu36I CCTNAGG 1 cut(s) 558
BsuRI GGCC 3 cut(s) 123, 144, 263
BtgI CCRYGG 4 cut(s) 78, 110, 258, 276
BtsCI GGATG 1 cut(s) 835
BtsIMutI CAGTG 1 cut(s) 793
BveI ACCTGC 1 cut(s) 348
CaiI CAGNNNCTG 2 cut(s) 240, 875
Cfr13I GGNCC 4 cut(s) 122, 143, 311, 800
Csp6I GTAC 1 cut(s) 879
CviAII CATG 6 cut(s) 79, 111, 277, 415, 464, 848
CviQI GTAC 1 cut(s) 879
DdeI CTNAG 3 cut(s) 57, 147, 558
DpnI GATC 1 cut(s) 678
DpnII GATC 1 cut(s) 676
DrdI GACNNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 221, 900
EarI CTCTTC 2 cut(s) 221, 900
EclXI CGGCCG 1 cut(s) 261
Eco130I CCWWGG 4 cut(s) 78, 110, 276, 862
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 311, 800
Eco52I CGGCCG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 677
Eco81I CCTNAGG 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 233, 296
EcoT14I CCWWGG 4 cut(s) 78, 110, 276, 862
EcoT22I ATGCAT 2 cut(s) 835, 849
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 4 cut(s) 78, 110, 276, 862
FaeI CATG 6 cut(s) 82, 114, 280, 418, 467, 851
FaiI YATR 9 cut(s) 80, 112, 278, 285, 416, 465, 510, 849, 894
FaqI GGGAC 1 cut(s) 57
FatI CATG 6 cut(s) 78, 110, 276, 414, 463, 847
Fnu4HI GCNGC 4 cut(s) 142, 273, 294, 759
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 4 cut(s) 142, 273, 294, 759
FspBI CTAG 1 cut(s) 531
GluI GCNGC 4 cut(s) 142, 273, 294, 759
HaeIII GGCC 3 cut(s) 123, 144, 263
Hin1II CATG 6 cut(s) 82, 114, 280, 418, 467, 851
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 5 cut(s) 25, 303, 548, 734, 767
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 8, 901
Hpy188I TCNGA 8 cut(s) 58, 150, 215, 477, 730, 739, 800, 941
Hpy188III TCNNGA 4 cut(s) 22, 314, 712, 764
Hpy8I GTNNAC 2 cut(s) 8, 901
HpyAV CCTTC 4 cut(s) 372, 405, 648, 814
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 6 cut(s) 8, 90, 343, 758, 833, 847
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 269, 278, 487
HpyF3I CTNAG 3 cut(s) 57, 147, 558
HpySE526I ACGT 1 cut(s) 632
Hsp92II CATG 6 cut(s) 82, 114, 280, 418, 467, 851
KpnI GGTACC 1 cut(s) 882
Kzo9I GATC 1 cut(s) 676
LguI GCTCTTC 1 cut(s) 900
LmnI GCTCC 3 cut(s) 486, 766, 866
Lsp1109I GCAGC 3 cut(s) 259, 280, 770
LweI GCATC 3 cut(s) 307, 820, 834
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 1 cut(s) 788
MalI GATC 1 cut(s) 678
MboI GATC 1 cut(s) 676
MhlI GDGCHC 3 cut(s) 10, 251, 711
MluCI AATT 4 cut(s) 403, 627, 794, 817
MlyI GAGTC 2 cut(s) 19, 297
MmeI TCCRAC 2 cut(s) 615, 762
Mph1103I ATGCAT 2 cut(s) 835, 849
MseI TTAA 2 cut(s) 444, 492
MslI CAYNNNNRTG 2 cut(s) 413, 572
MspCI CTTAAG 1 cut(s) 491
MspR9I CCNGG 2 cut(s) 235, 298
Mva1269I GAATGC 1 cut(s) 438
MvaI CCWGG 2 cut(s) 235, 298
MwoI GCNNNNNNNGC 4 cut(s) 141, 269, 278, 487
NcoI CCATGG 3 cut(s) 78, 110, 276
NdeII GATC 1 cut(s) 676
NlaIII CATG 6 cut(s) 82, 114, 280, 418, 467, 851
NlaIV GGNNCC 3 cut(s) 482, 802, 880
NmuCI GTSAC 1 cut(s) 788
NsiI ATGCAT 2 cut(s) 835, 849
PaqCI CACCTGC 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 900
PcsI WCGNNNNNNNCGW 2 cut(s) 175, 261
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 548, 734, 767
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 4 cut(s) 143, 274, 295, 760
PleI GAGTC 2 cut(s) 19, 297
PpsI GAGTC 2 cut(s) 19, 297
PshBI ATTAAT 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 233, 296
PspGI CCWGG 2 cut(s) 233, 296
PspN4I GGNNCC 3 cut(s) 482, 802, 880
PspPI GGNCC 4 cut(s) 122, 143, 311, 800
PstI CTGCAG 1 cut(s) 92
PstNI CAGNNNCTG 2 cut(s) 240, 875
RsaI GTAC 1 cut(s) 880
RsaNI GTAC 1 cut(s) 879
RseI CAYNNNNRTG 2 cut(s) 413, 572
SapI GCTCTTC 1 cut(s) 900
SaqAI TTAA 2 cut(s) 444, 492
SatI GCNGC 4 cut(s) 142, 273, 294, 759
Sau3AI GATC 1 cut(s) 676
Sau96I GGNCC 4 cut(s) 122, 143, 311, 800
SchI GAGTC 2 cut(s) 19, 297
ScrFI CCNGG 2 cut(s) 235, 298
SduI GDGCHC 3 cut(s) 10, 251, 711
SfaNI GCATC 3 cut(s) 307, 820, 834
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 2 cut(s) 311, 800
SmiMI CAYNNNNRTG 2 cut(s) 413, 572
SmlI CTYRAG 2 cut(s) 491, 710
SmoI CTYRAG 2 cut(s) 491, 710
Sse9I AATT 4 cut(s) 403, 627, 794, 817
SsiI CCGC 1 cut(s) 141
SspI AATATT 1 cut(s) 442
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 233, 296
StyI CCWWGG 4 cut(s) 78, 110, 276, 862
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 635
TaqI TCGA 3 cut(s) 169, 178, 773
TasI AATT 4 cut(s) 403, 627, 794, 817
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 3 cut(s) 548, 734, 767
Tru1I TTAA 2 cut(s) 444, 492
Tru9I TTAA 2 cut(s) 444, 492
TscAI CASTG 1 cut(s) 793
TseFI GTSAC 1 cut(s) 788
TseI GCWGC 3 cut(s) 272, 293, 758
Tsp45I GTSAC 1 cut(s) 788
TspDTI ATGAA 4 cut(s) 397, 452, 461, 525
TspRI CASTG 1 cut(s) 793
Van91I CCANNNNNTGG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 491
VneI GTGCAC 1 cut(s) 6
VpaK11BI GGWCC 2 cut(s) 311, 800
VspI ATTAAT 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 129
XapI RAATTY 3 cut(s) 403, 794, 817
XcmI CCANNNNNNNNNTGG 2 cut(s) 108, 241
XspI CTAG 1 cut(s) 531
Zsp2I ATGCAT 2 cut(s) 835, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.