AT3G57910

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013204
Physical Location & Seq
Forward (+)
21442642 .. 21446183
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57910.1

Sequence Viewer

Length: 798 bp
ATGGCAGAATCGACGAGAAATCTGACTGGGCTTGGAGGAGAAGCAGCGAAAGAAGAAGATGATGAGTACATGGGAGACCTTTCTCAGTTTATTCCTCAGGAACTTAGCCAGACCTCCAAAAGAAAGGAATCTGAGAAGAAAACTGTAATCGTAGAACCATCACGGAAGAAGTTAAAAAATCTCAATTGGCACGAGAGACGAAGATTGGAGAAAGAGAGGAAACAGATAGAAGAAGATGAGCAGACATTGGCTCGTATAGTAGACACTCCAATAGGAGAGTCTAACATAGGGTTTAAGCTATTGAAGCAAATGGGTTACAAGCCAGGTTCTGCTCTTGGTAAACAAGGCTCTGGTAGAGCTGAGCCAGTGACTATGGATATTCGAAGATCGAGAGCCGGTGTGGGAAGAGAGGATCCACATAAGGAGAAGAAGAAAAAGGAGGAGATTGAGGCTGAGAATGAGAAGAGAAAAGTGGATGAGATGTTGGAGGATTTTGGGTCTAGACAGAAGTCTCAATGGCGTAAGAAAAGAGTTTTGATTAACTTTAGGAAGGCTAAGGCTGCTCTTGATCAACTTGAGAATGTAGAAGTTGTTCCGGAGAAGAAAAATGAGGAAGATGAAGATGGTAAGCCTGATGAAGAAGAGGAAGAAGAGGAGGAGATCACTGAAGAGGATTTGCAAGAAATATTAATGAAACTGAGAGCTGAACATTGGTATTGCCTTTTCTGCGGGTTCCAGTATGAAACGACTGAAGCTCTTCTATCCAACTGTCCTGGCGTAAATGAGGATGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

265

Amino Acids

30.78

Weight (kDa)

5.07

Isoelectric Point (pI)

66.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 91 - 137 9.5e-06 G-patch domain
G-patch PF01585 94 - 136 9.6e-15 G-patch domain
DUF4187 PF13821 212 - 265 3.7e-19 Domain of unknown function (DUF4187)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 1 cut(s) 729
AclWI GGATC 2 cut(s) 407, 420
AcuI CTGAAG 2 cut(s) 687, 771
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 2 cut(s) 322, 772
AluBI AGCT 4 cut(s) 298, 359, 704, 755
AluI AGCT 4 cut(s) 298, 359, 704, 755
Alw26I GTCTC 3 cut(s) 69, 190, 516
AlwI GGATC 2 cut(s) 407, 420
AlwNI CAGNNNCTG 1 cut(s) 329
Aor13HI TCCGGA 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 44, 560
AseI ATTAAT 1 cut(s) 689
Asp700I GAANNNNTTC 2 cut(s) 591, 756
AsuII TTCGAA 1 cut(s) 382
AxyI CCTNAGG 1 cut(s) 96
BamHI GGATCC 1 cut(s) 412
BauI CACGAG 1 cut(s) 191
BbvI GCAGC 2 cut(s) 56, 547
BccI CCATC 2 cut(s) 166, 617
BciT130I CCWGG 2 cut(s) 324, 774
BclI TGATCA 2 cut(s) 568, 790
BcoDI GTCTC 3 cut(s) 69, 190, 516
BfaI CTAG 2 cut(s) 501, 796
BisI GCNGC 2 cut(s) 45, 561
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 2 cut(s) 46, 562
Bme1390I CCNGG 2 cut(s) 324, 774
BmiI GGNNCC 2 cut(s) 414, 734
BmrFI CCNGG 2 cut(s) 324, 774
BmrI ACTGGG 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 36
BoxI GACNNNNGTC 1 cut(s) 508
Bpu10I CCTNAGC 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 595
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 3 cut(s) 31, 365, 736
Bse21I CCTNAGG 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 2 cut(s) 324, 774
BseGI GGATG 2 cut(s) 481, 793
BseMII CTCAG 6 cut(s) 98, 110, 123, 351, 444, 689
BseNI ACTGG 3 cut(s) 31, 365, 736
BseRI GAGGAG 4 cut(s) 51, 455, 668, 671
BseXI GCAGC 2 cut(s) 56, 547
BsiSI CCGG 2 cut(s) 396, 596
BsmAI GTCTC 3 cut(s) 69, 190, 516
BsmBI CGTCTC 1 cut(s) 190
Bso31I GGTCTC 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 382
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 5 cut(s) 386, 412, 568, 660, 790
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 1 cut(s) 729
BspCNI CTCAG 6 cut(s) 97, 109, 124, 352, 445, 690
BspEI TCCGGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 414, 734
BspPI GGATC 2 cut(s) 407, 420
BspQI GCTCTTC 1 cut(s) 762
BspT104I TTCGAA 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 3 cut(s) 31, 365, 736
BssAI RCCGGY 1 cut(s) 395
BssMI GATC 5 cut(s) 386, 412, 568, 660, 790
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 2 cut(s) 324, 774
Bst4CI ACNGT 2 cut(s) 145, 770
Bst6I CTCTTC 6 cut(s) 400, 458, 636, 645, 663, 762
BstBI TTCGAA 1 cut(s) 382
BstDEI CTNAG 8 cut(s) 84, 96, 104, 132, 360, 453, 555, 698
BstF5I GGATG 2 cut(s) 481, 793
BstKTI GATC 5 cut(s) 389, 415, 571, 663, 793
BstMAI GTCTC 3 cut(s) 69, 190, 516
BstMBI GATC 5 cut(s) 386, 412, 568, 660, 790
BstMWI GCNNNNNNNGC 3 cut(s) 304, 560, 726
BstNI CCWGG 2 cut(s) 324, 774
BstPAI GACNNNNGTC 1 cut(s) 508
BstSCI CCNGG 2 cut(s) 322, 772
BstV1I GCAGC 2 cut(s) 56, 547
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
Bsu36I CCTNAGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 481, 793
BtsIMutI CAGTG 2 cut(s) 372, 663
CaiI CAGNNNCTG 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 395
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 70
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 8 cut(s) 84, 96, 104, 132, 360, 453, 555, 698
DpnI GATC 5 cut(s) 388, 414, 570, 662, 792
DpnII GATC 5 cut(s) 386, 412, 568, 660, 790
Eam1104I CTCTTC 6 cut(s) 400, 458, 636, 645, 663, 762
EarI CTCTTC 6 cut(s) 400, 458, 636, 645, 663, 762
Eco31I GGTCTC 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 687, 771
Eco81I CCTNAGG 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 322, 772
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 1 cut(s) 73
FaiI YATR 6 cut(s) 71, 257, 287, 374, 420, 741
FatI CATG 1 cut(s) 69
FauI CCCGC 1 cut(s) 722
FbaI TGATCA 2 cut(s) 568, 790
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 45, 561
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 2 cut(s) 45, 561
FspBI CTAG 2 cut(s) 501, 796
GluI GCNGC 2 cut(s) 45, 561
HapII CCGG 2 cut(s) 396, 596
Hin1II CATG 1 cut(s) 73
HinfI GANTC 3 cut(s) 8, 128, 278
HpaII CCGG 2 cut(s) 396, 596
Hpy166II GTNNAC 2 cut(s) 262, 341
Hpy188I TCNGA 2 cut(s) 24, 133
Hpy188III TCNNGA 5 cut(s) 98, 390, 501, 566, 596
Hpy8I GTNNAC 2 cut(s) 262, 341
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 2 cut(s) 145, 770
HpyCH4V TGCA 1 cut(s) 679
HpyF10VI GCNNNNNNNGC 3 cut(s) 304, 560, 726
HpyF3I CTNAG 8 cut(s) 84, 96, 104, 132, 360, 453, 555, 698
Hsp92II CATG 1 cut(s) 73
Kpn2I TCCGGA 1 cut(s) 595
Ksp22I TGATCA 2 cut(s) 568, 790
Kzo9I GATC 5 cut(s) 386, 412, 568, 660, 790
LguI GCTCTTC 1 cut(s) 762
Lsp1109I GCAGC 2 cut(s) 56, 547
MaeI CTAG 2 cut(s) 501, 796
MaeIII GTNAC 2 cut(s) 314, 367
MalI GATC 5 cut(s) 388, 414, 570, 662, 792
MboI GATC 5 cut(s) 386, 412, 568, 660, 790
MfeI CAATTG 1 cut(s) 184
MflI RGATCY 1 cut(s) 412
MluCI AATT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 2 cut(s) 465, 789
MroI TCCGGA 1 cut(s) 595
MroXI GAANNNNTTC 2 cut(s) 591, 756
MseI TTAA 4 cut(s) 173, 294, 540, 689
MspI CCGG 2 cut(s) 396, 596
MspR9I CCNGG 2 cut(s) 324, 774
MunI CAATTG 1 cut(s) 184
MvaI CCWGG 2 cut(s) 324, 774
MwoI GCNNNNNNNGC 3 cut(s) 304, 560, 726
NdeII GATC 5 cut(s) 386, 412, 568, 660, 790
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 2 cut(s) 414, 734
NmuCI GTSAC 1 cut(s) 367
NspV TTCGAA 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 762
PdmI GAANNNNTTC 2 cut(s) 591, 756
PfeI GAWTC 2 cut(s) 8, 128
PkrI GCNGC 2 cut(s) 46, 562
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PshAI GACNNNNGTC 1 cut(s) 508
PshBI ATTAAT 1 cut(s) 689
Psp6I CCWGG 2 cut(s) 322, 772
PspGI CCWGG 2 cut(s) 322, 772
PspN4I GGNNCC 2 cut(s) 414, 734
PsrI GAACNNNNNNTAC 2 cut(s) 576, 608
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 4 cut(s) 173, 294, 540, 689
SatI GCNGC 2 cut(s) 45, 561
Sau3AI GATC 5 cut(s) 386, 412, 568, 660, 790
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 324, 774
SetI ASST 7 cut(s) 81, 116, 300, 328, 361, 706, 757
SfuI TTCGAA 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 1 cut(s) 184
SsiI CCGC 1 cut(s) 729
SspI AATATT 1 cut(s) 687
SspMI CTAG 2 cut(s) 501, 796
StyD4I CCNGG 2 cut(s) 322, 772
TaaI ACNGT 2 cut(s) 145, 770
TaqI TCGA 3 cut(s) 11, 382, 389
TasI AATT 1 cut(s) 184
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 2 cut(s) 8, 128
Tru1I TTAA 4 cut(s) 173, 294, 540, 689
Tru9I TTAA 4 cut(s) 173, 294, 540, 689
TscAI CASTG 2 cut(s) 372, 670
TseFI GTSAC 1 cut(s) 367
TseI GCWGC 2 cut(s) 44, 560
Tsp45I GTSAC 1 cut(s) 367
TspDTI ATGAA 4 cut(s) 633, 651, 707, 756
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 2 cut(s) 372, 670
VspI ATTAAT 1 cut(s) 689
XbaI TCTAGA 1 cut(s) 500
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 591, 756
XspI CTAG 2 cut(s) 501, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.