Prupe.7G074100_v2.0.a1

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013204
Physical Location & Seq
Forward (+)
11144369 .. 11146939
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G074100.2

Sequence Viewer

Length: 762 bp
ATGGCGGAAGAAGATGATTACATGGGGGATCTCTCTCAGTTCCTGACTCCAGAAGCCTCCGGCCCTCCACGGCTTTTATCCAAAAAGATTTCTAATAGCAAAAACCAAAGTATTCAACCCTCTAAGAAAAAATCCAAAGCACTAAACTGGCAAGAACAGCGTAAACTCGATAGGGAGAGAAAGCAGCAGGAAGAGGATGAGAAAACCTTGGCCAAAATAGAGGCTGCTCCTATTCCACAATCCAACATAGGATTCAAACTTTTAAAACAAATGGGGTATACCCCAGGCTCAGCTCTTGGCAAGGAGGGATCAGGCCAGGCTGAGCCAGTGAAGATTGACATTCGGCGCTCACGGGCTGGAATTGGGCGGGAGGACCCACATAAGGAGAAGAGGAAGAGAGAAGAAATAAGGACTTGGGCGGAGAGGAGGAACGAGCAGGTTATGATGGAGGAGTTTGGGTCTAGGAAAAAGTCACAGTGGCGGAGTCGGAGAGTTGTGGTCAATTTTAAGAAGGCGCAGGCGGCTTTGGATCAATTGGAGAATAAGGAAGTTGTGCCGCCCGAGAAGAATGAGGATGAAGAAGAGGAGGGTGGAGGGGAGGAAGAGGAAGAGGAAGAGGAAGAAATTACAGAAGAGGATTTGCTAGAGATATTGATGAAACTGAGAGATGAGCATCGATACTGCCTCTTTTGTGGATGTCAGTATGAATCAATGGAGGCACTATTAACCCACTGCCCTGGAGCTGATGAAGATGACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

254

Amino Acids

29.25

Weight (kDa)

5.08

Isoelectric Point (pI)

73.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 278
AciI CCGC 6 cut(s) 5, 367, 419, 481, 521, 557
AclWI GGATC 3 cut(s) 36, 316, 537
AcoI YGGCCR 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 2 cut(s) 116, 256
AjnI CCWGG 3 cut(s) 283, 315, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 2 cut(s) 293, 743
AluI AGCT 2 cut(s) 293, 743
AlwI GGATC 3 cut(s) 36, 316, 537
AlwNI CAGNNNCTG 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 3 cut(s) 61, 210, 313
ApeKI GCWGC 2 cut(s) 184, 224
AspLEI GCGC 2 cut(s) 348, 517
AspS9I GGNCC 2 cut(s) 62, 373
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 373
BalI TGGCCA 1 cut(s) 212
BbvI GCAGC 2 cut(s) 196, 211
BccI CCATC 1 cut(s) 439
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 3 cut(s) 285, 317, 738
BfaI CTAG 2 cut(s) 462, 644
BfoI RGCGCY 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 427
BisI GCNGC 4 cut(s) 185, 225, 522, 557
BlpI GCTNAGC 2 cut(s) 289, 321
BlsI GCNGC 4 cut(s) 186, 226, 523, 558
Bme1390I CCNGG 3 cut(s) 285, 317, 738
Bme18I GGWCC 1 cut(s) 373
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 62, 373
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 3 cut(s) 285, 317, 738
BmsI GCATC 1 cut(s) 682
BpmI CTGGAG 2 cut(s) 33, 759
Bpu1102I GCTNAGC 2 cut(s) 289, 321
Bsa29I ATCGAT 1 cut(s) 676
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 4 cut(s) 68, 207, 283, 736
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 152, 326
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 3 cut(s) 285, 317, 738
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 4 cut(s) 68, 207, 283, 736
BseGI GGATG 3 cut(s) 202, 580, 701
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 4 cut(s) 50, 303, 312, 653
BseNI ACTGG 2 cut(s) 152, 326
BseRI GAGGAG 3 cut(s) 439, 464, 599
BseXI GCAGC 2 cut(s) 196, 211
BshFI GGCC 3 cut(s) 63, 212, 315
BshVI ATCGAT 1 cut(s) 676
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 382
BsnI GGCC 3 cut(s) 63, 212, 315
BsoBI CYCGRG 1 cut(s) 560
Bsp143I GATC 3 cut(s) 28, 308, 529
Bsp1720I GCTNAGC 2 cut(s) 289, 321
BspACI CCGC 6 cut(s) 5, 367, 419, 481, 521, 557
BspANI GGCC 3 cut(s) 63, 212, 315
BspCNI CTCAG 4 cut(s) 49, 302, 313, 654
BspDI ATCGAT 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 3 cut(s) 36, 316, 537
BsrI ACTGG 2 cut(s) 152, 326
BssECI CCNNGG 4 cut(s) 68, 207, 283, 736
BssMI GATC 3 cut(s) 28, 308, 529
BssNAI GTATAC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 207
Bst1107I GTATAC 1 cut(s) 279
Bst2UI CCWGG 3 cut(s) 285, 317, 738
Bst4CI ACNGT 1 cut(s) 477
Bst6I CTCTTC 8 cut(s) 186, 383, 389, 576, 597, 603, 609, 627
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 5 cut(s) 36, 123, 289, 321, 662
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 3 cut(s) 202, 580, 701
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 348, 517
BstKTI GATC 3 cut(s) 31, 311, 532
BstMBI GATC 3 cut(s) 28, 308, 529
BstMWI GCNNNNNNNGC 2 cut(s) 157, 521
BstNI CCWGG 3 cut(s) 285, 317, 738
BstSCI CCNGG 3 cut(s) 283, 315, 736
BstV1I GCAGC 2 cut(s) 196, 211
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 737
BstYI RGATCY 1 cut(s) 28
BstZ17I GTATAC 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 676
BsuRI GGCC 3 cut(s) 63, 212, 315
BsuTUI ATCGAT 1 cut(s) 676
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 3 cut(s) 202, 580, 701
BtsI GCAGTG 1 cut(s) 730
BtsIMutI CAGTG 4 cut(s) 333, 482, 730, 757
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 519
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 2 cut(s) 348, 517
Cfr13I GGNCC 2 cut(s) 62, 373
ClaI ATCGAT 1 cut(s) 676
CviAII CATG 1 cut(s) 22
DdeI CTNAG 5 cut(s) 36, 123, 289, 321, 662
DpnI GATC 3 cut(s) 30, 310, 531
DpnII GATC 3 cut(s) 28, 308, 529
DraI TTTAAA 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 8 cut(s) 186, 383, 389, 576, 597, 603, 609, 627
EarI CTCTTC 8 cut(s) 186, 383, 389, 576, 597, 603, 609, 627
EciI GGCGGA 3 cut(s) 20, 434, 496
Eco130I CCWWGG 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 3 cut(s) 283, 315, 736
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 25
FaiI YATR 6 cut(s) 23, 248, 279, 381, 443, 705
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 360
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 4 cut(s) 185, 225, 522, 557
FokI GGATG 3 cut(s) 209, 587, 708
Fsp4HI GCNGC 4 cut(s) 185, 225, 522, 557
FspBI CTAG 2 cut(s) 462, 644
GlaI GCGC 2 cut(s) 347, 516
GluI GCNGC 4 cut(s) 185, 225, 522, 557
GsuI CTGGAG 2 cut(s) 33, 759
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 3 cut(s) 63, 212, 315
HapII CCGG 1 cut(s) 60
HhaI GCGC 2 cut(s) 348, 517
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 2 cut(s) 346, 515
HinP1I GCGC 2 cut(s) 346, 515
HinfI GANTC 4 cut(s) 46, 252, 484, 707
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 164, 279
Hpy188I TCNGA 1 cut(s) 489
Hpy188III TCNNGA 2 cut(s) 43, 50
Hpy8I GTNNAC 2 cut(s) 164, 279
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 1 cut(s) 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 521
HpyF3I CTNAG 5 cut(s) 36, 123, 289, 321, 662
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 2 cut(s) 346, 515
Kzo9I GATC 3 cut(s) 28, 308, 529
LmnI GCTCC 2 cut(s) 232, 740
Lsp1109I GCAGC 2 cut(s) 196, 211
LweI GCATC 1 cut(s) 682
MaeI CTAG 2 cut(s) 462, 644
MaeIII GTNAC 1 cut(s) 471
MalI GATC 3 cut(s) 30, 310, 531
MboI GATC 3 cut(s) 28, 308, 529
MfeI CAATTG 1 cut(s) 533
MflI RGATCY 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 4 cut(s) 360, 502, 533, 624
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 2 cut(s) 40, 493
MmeI TCCRAC 2 cut(s) 267, 467
Mox20I TGGCCA 1 cut(s) 212
MscI TGGCCA 1 cut(s) 212
MseI TTAA 3 cut(s) 263, 507, 725
Msp20I TGGCCA 1 cut(s) 212
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 3 cut(s) 285, 317, 738
MunI CAATTG 1 cut(s) 533
MvaI CCWGG 3 cut(s) 285, 317, 738
MwoI GCNNNNNNNGC 2 cut(s) 157, 521
NdeII GATC 3 cut(s) 28, 308, 529
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 471
PfeI GAWTC 2 cut(s) 252, 707
PkrI GCNGC 4 cut(s) 186, 226, 523, 558
PleI GAGTC 2 cut(s) 40, 492
PpsI GAGTC 2 cut(s) 40, 492
PpuMI RGGWCCY 1 cut(s) 373
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 3 cut(s) 283, 315, 736
PspGI CCWGG 3 cut(s) 283, 315, 736
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 2 cut(s) 62, 373
PspPPI RGGWCCY 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 28
SaqAI TTAA 3 cut(s) 263, 507, 725
SatI GCNGC 4 cut(s) 185, 225, 522, 557
Sau3AI GATC 3 cut(s) 28, 308, 529
Sau96I GGNCC 2 cut(s) 62, 373
SchI GAGTC 2 cut(s) 40, 493
ScrFI CCNGG 3 cut(s) 285, 317, 738
SetI ASST 4 cut(s) 209, 295, 441, 745
SfaNI GCATC 1 cut(s) 682
SinI GGWCC 1 cut(s) 373
Sse9I AATT 4 cut(s) 360, 502, 533, 624
SsiI CCGC 6 cut(s) 5, 367, 419, 481, 521, 557
SspMI CTAG 2 cut(s) 462, 644
StyD4I CCNGG 3 cut(s) 283, 315, 736
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 477
TaqI TCGA 2 cut(s) 168, 676
TasI AATT 4 cut(s) 360, 502, 533, 624
TauI GCSGC 2 cut(s) 524, 559
TfiI GAWTC 2 cut(s) 252, 707
Tru1I TTAA 3 cut(s) 263, 507, 725
Tru9I TTAA 3 cut(s) 263, 507, 725
TscAI CASTG 3 cut(s) 333, 482, 737
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 2 cut(s) 184, 224
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 4 cut(s) 591, 671, 720, 762
TspRI CASTG 3 cut(s) 333, 482, 737
VpaK11BI GGWCC 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 2 cut(s) 462, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.