Rh3CG262700

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013204
Physical Location & Seq
Reverse (-)
25653780 .. 25659968
6189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG262700.1

Sequence Viewer

Length: 705 bp
ATGGCGGAAGGAGGGGAAGAAGATGACTACATGGGGGACCTCTCTCGATTTCTCTCTCCAGAAGCTTCCGTTCCTCTCTCAAAAAAGGTTTCGAATAGCAAAGCCTCTGGTGTTCAAGCCGCTAAGAAAAAACCCAAAGCGCTGAATTGGCAAGAGCAGCGCAAGATTGATAGGGAGAGAAAGCAACGAGAGGAGGATGAGAAAACGTTGGCGAATATAGAGGCGCCTATTCCGCAATCCAACATAGGGTTCAAGCTTTTGAAGCAAATGGGGTATACCCCAGGCTCTGCCCTTGGGAAGGAGGGGTCGGGCCGGGCTGAACCGGTGAAGGTTGATATCCGGCGGTCGAGAGCTGGAATTGGGAGGGAGGATCCTCATAAGGAGAAGAGGAAGAGAGAGGAGGGGAAGAGGAATGAGGAGAGCTTGATGGAGGAGTTTGGGTGGAGGAAGAAGTCACAGTGGCGGATTCGGAGAGTTGTGGTTAATTTTCACAAGGCCAAGGCGGTTTTGGATCAGTTGGAGAACAAGGAGGTTGTGCTGCCGGAGAAGAATGAGGATGAGGAAGAGGAGGGGGGAGAGTCGGAAGAGGAAGAGGAACAGATTACAGAAGAGGATTTACAAGAGATATTGATGAAACTGAGAGATGAACATCGATACTGCCTCTTCTGTGGATGCCAGGTAAGCATATTACGTGGCTGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

234

Amino Acids

26.85

Weight (kDa)

5.73

Isoelectric Point (pI)

74.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 75 - 123 4.9e-07 G-patch domain
G-patch PF01585 80 - 122 8.1e-16 G-patch domain
DUF4187 PF13821 193 - 226 1.1e-09 Domain of unknown function (DUF4187)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 275
AciI CCGC 6 cut(s) 5, 120, 233, 343, 463, 503
AclI AACGTT 1 cut(s) 206
AclWI GGATC 3 cut(s) 365, 378, 519
AcyI GRCGYC 1 cut(s) 224
AfeI AGCGCT 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 246, 298
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 3 cut(s) 116, 253, 262
AjnI CCWGG 2 cut(s) 280, 675
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 65, 256, 353, 423
AluI AGCT 4 cut(s) 65, 256, 353, 423
AlwI GGATC 3 cut(s) 365, 378, 519
AlwNI CAGNNNCTG 1 cut(s) 287
Aor51HI AGCGCT 1 cut(s) 141
AoxI GGCC 2 cut(s) 310, 495
ApeKI GCWGC 2 cut(s) 157, 538
AsiGI ACCGGT 1 cut(s) 322
AspLEI GCGC 3 cut(s) 142, 162, 226
AspS9I GGNCC 2 cut(s) 37, 310
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 37
BamHI GGATCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 600, 632
BbvI GCAGC 2 cut(s) 169, 525
BccI CCATC 1 cut(s) 421
BciT130I CCWGG 2 cut(s) 282, 677
BcnI CCSGG 1 cut(s) 314
BfoI RGCGCY 2 cut(s) 143, 227
BisI GCNGC 3 cut(s) 120, 158, 539
BlsI GCNGC 3 cut(s) 121, 159, 540
Bme1390I CCNGG 3 cut(s) 282, 314, 677
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 310
BmiI GGNNCC 3 cut(s) 38, 225, 372
BmrFI CCNGG 3 cut(s) 282, 314, 677
BmsI GCATC 1 cut(s) 662
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 652
BsaAI YACGTR 1 cut(s) 692
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 280, 292, 498
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 298
Bse118I RCCGGY 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 2 cut(s) 282, 677
BseCI ATCGAT 1 cut(s) 652
BseDI CCNNGG 3 cut(s) 280, 292, 498
BseGI GGATG 3 cut(s) 202, 562, 677
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 246, 298
BseMII CTCAG 1 cut(s) 629
BseRI GAGGAG 5 cut(s) 206, 413, 431, 446, 581
BseXI GCAGC 2 cut(s) 169, 525
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 2 cut(s) 312, 497
BshNI GGYRCC 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 322
BshVI ATCGAT 1 cut(s) 652
BsiEI CGRYCG 1 cut(s) 347
BsiSI CCGG 4 cut(s) 313, 323, 340, 542
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 246, 298
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 312, 497
Bsp119I TTCGAA 1 cut(s) 92
Bsp143I GATC 2 cut(s) 370, 511
BspACI CCGC 6 cut(s) 5, 120, 233, 343, 463, 503
BspANI GGCC 2 cut(s) 312, 497
BspCNI CTCAG 1 cut(s) 630
BspDI ATCGAT 1 cut(s) 652
BspLI GGNNCC 3 cut(s) 38, 225, 372
BspPI GGATC 3 cut(s) 365, 378, 519
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 3 cut(s) 280, 292, 498
BssMI GATC 2 cut(s) 370, 511
BssNAI GTATAC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 292, 498
Bst1107I GTATAC 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 282, 677
Bst4CI ACNGT 1 cut(s) 459
Bst6I CTCTTC 8 cut(s) 380, 386, 401, 558, 579, 585, 603, 668
BstACI GRCGYC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 692
BstBI TTCGAA 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 123, 638
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 202, 562, 677
BstH2I RGCGCY 2 cut(s) 143, 227
BstHHI GCGC 3 cut(s) 142, 162, 226
BstKTI GATC 2 cut(s) 373, 514
BstMBI GATC 2 cut(s) 370, 511
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 5 cut(s) 148, 157, 232, 262, 681
BstNI CCWGG 2 cut(s) 282, 677
BstSCI CCNGG 3 cut(s) 280, 312, 675
BstV1I GCAGC 2 cut(s) 169, 525
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 652
BsuRI GGCC 2 cut(s) 312, 497
BsuTUI ATCGAT 1 cut(s) 652
BtsCI GGATG 3 cut(s) 202, 562, 677
BtsIMutI CAGTG 1 cut(s) 464
CaiI CAGNNNCTG 1 cut(s) 287
CfoI GCGC 3 cut(s) 142, 162, 226
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 37, 310
ClaI ATCGAT 1 cut(s) 652
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 1 cut(s) 31
DdeI CTNAG 2 cut(s) 123, 638
DinI GGCGCC 1 cut(s) 225
DpnI GATC 2 cut(s) 372, 513
DpnII GATC 2 cut(s) 370, 511
Eam1104I CTCTTC 8 cut(s) 380, 386, 401, 558, 579, 585, 603, 668
EarI CTCTTC 8 cut(s) 380, 386, 401, 558, 579, 585, 603, 668
EciI GGCGGA 2 cut(s) 20, 478
Eco130I CCWWGG 2 cut(s) 292, 498
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 280, 675
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 292, 498
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 292, 498
FaeI CATG 1 cut(s) 34
FaiI YATR 7 cut(s) 32, 218, 245, 276, 378, 686, 703
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 3 cut(s) 120, 158, 539
FokI GGATG 3 cut(s) 209, 569, 684
Fsp4HI GCNGC 3 cut(s) 120, 158, 539
GlaI GCGC 3 cut(s) 141, 161, 225
GluI GCNGC 3 cut(s) 120, 158, 539
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 2 cut(s) 143, 227
HaeIII GGCC 2 cut(s) 312, 497
HapII CCGG 4 cut(s) 313, 323, 340, 542
HhaI GCGC 3 cut(s) 142, 162, 226
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 3 cut(s) 140, 160, 224
HinP1I GCGC 3 cut(s) 140, 160, 224
HindIII AAGCTT 2 cut(s) 63, 254
HinfI GANTC 2 cut(s) 466, 578
HpaII CCGG 4 cut(s) 313, 323, 340, 542
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 471, 583
Hpy188III TCNNGA 3 cut(s) 45, 59, 348
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 292, 322
HpyCH4III ACNGT 1 cut(s) 459
HpyCH4IV ACGT 2 cut(s) 206, 691
HpyCH4V TGCA 1 cut(s) 701
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 157, 232, 262, 681
HpyF3I CTNAG 2 cut(s) 123, 638
HpySE526I ACGT 2 cut(s) 206, 691
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 3 cut(s) 140, 160, 224
KasI GGCGCC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 370, 511
Lsp1109I GCAGC 2 cut(s) 169, 525
LweI GCATC 1 cut(s) 662
MaeII ACGT 2 cut(s) 206, 691
MaeIII GTNAC 1 cut(s) 453
MalI GATC 2 cut(s) 372, 513
MboI GATC 2 cut(s) 370, 511
MflI RGATCY 1 cut(s) 370
MluCI AATT 3 cut(s) 145, 357, 484
Mly113I GGCGCC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 3 cut(s) 264, 498, 561
MseI TTAA 1 cut(s) 483
MspI CCGG 4 cut(s) 313, 323, 340, 542
MspR9I CCNGG 3 cut(s) 282, 314, 677
MvaI CCWGG 2 cut(s) 282, 677
MwoI GCNNNNNNNGC 5 cut(s) 148, 157, 232, 262, 681
NarI GGCGCC 1 cut(s) 224
NciI CCSGG 1 cut(s) 314
NdeII GATC 2 cut(s) 370, 511
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 3 cut(s) 38, 225, 372
NmuCI GTSAC 1 cut(s) 453
NspV TTCGAA 1 cut(s) 92
PfeI GAWTC 1 cut(s) 466
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 3 cut(s) 121, 159, 540
PleI GAGTC 1 cut(s) 586
PluTI GGCGCC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 586
Ppu21I YACGTR 1 cut(s) 692
PpuMI RGGWCCY 1 cut(s) 37
Psp1406I AACGTT 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 280, 675
PspGI CCWGG 2 cut(s) 280, 675
PspN4I GGNNCC 3 cut(s) 38, 225, 372
PspPI GGNCC 2 cut(s) 37, 310
PspPPI RGGWCCY 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 370
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 3 cut(s) 120, 158, 539
Sau3AI GATC 2 cut(s) 370, 511
Sau96I GGNCC 2 cut(s) 37, 310
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 3 cut(s) 282, 314, 677
SfaNI GCATC 1 cut(s) 662
SfoI GGCGCC 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 37
Sse9I AATT 3 cut(s) 145, 357, 484
SsiI CCGC 6 cut(s) 5, 120, 233, 343, 463, 503
SspDI GGCGCC 1 cut(s) 223
StyD4I CCNGG 3 cut(s) 280, 312, 675
StyI CCWWGG 2 cut(s) 292, 498
TaaI ACNGT 1 cut(s) 459
TaiI ACGT 2 cut(s) 209, 694
TaqI TCGA 4 cut(s) 46, 92, 347, 652
TasI AATT 3 cut(s) 145, 357, 484
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 464
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 2 cut(s) 157, 538
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 2 cut(s) 647, 660
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.