Rh3BG265500

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013204
Physical Location & Seq
Reverse (-)
25674270 .. 25677128
2859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG265500.1

Sequence Viewer

Length: 714 bp
ATGGCGGAAGGAGGAGGGGAAGAAGATGACTACATGGGGGACCTCTCTCGATTTCTCTCTCCAGAAGCTTCCGTTCCTCTCTCGAAAAAGGTTTCGAATAGCAAAGCCTCTGGTGTTCAAGCCGCTAAGAAAAAACCCAAAGCACTGAATTGGCAAGAGCAGCGTAAGATTGATAGGGAGAGAAAGCAACGAGAGGAGGATGAGAAAACGTTGGCGAATATAGAGGCGCCTATTCCGCAATCCAACATAGGGTTCAAGCTTTTGAAGCAAATGGGGTATACCCCAGGGTCTGCCCTTGGGAAGGAGGGGTCGGGCCGGGCTGAACCGGTGAAGGTTGATATCCGGCGGTCGAGAGCTGGAATTGGGAGGGAGGATCCTCATAAGGAGAAGAGGAAGAGAGAGGAGGTGAGGAGTGAGGAGGAGAAGAGGAATGAGGAGAGCTTGATGGAGGAGTTTGGGTGGAGGAAGAAGTCACAGTGGCGGATTCGGAGAGTTGTGGTTAATTTTAACAAGGCCAAGGCGGTTTTGGATCAGTTGGAGAATAAGGAGGTTGTGCCGAATGAGGATGAGGAAGAGGAGGGGGGAGAGTCGGAAGAGGAAGAGGAACAGATTACAGAAGAGGATTTACAAGAGATATTGATGAAACTGAGAGATGAACATCGATACTGCCTCTTCTGTGGATGCCAGGTAAGCATAGTACGTGGCTGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

237

Amino Acids

27.18

Weight (kDa)

5.41

Isoelectric Point (pI)

77.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 76 - 124 5.1e-07 G-patch domain
G-patch PF01585 81 - 123 8.2e-16 G-patch domain
DUF4187 PF13821 196 - 229 9.5e-10 Domain of unknown function (DUF4187)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccI GTMKAC 1 cut(s) 278
AciI CCGC 6 cut(s) 5, 123, 236, 346, 481, 521
AclI AACGTT 1 cut(s) 209
AclWI GGATC 3 cut(s) 368, 381, 537
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 1 cut(s) 699
AfiI CCNNNNNNNGG 2 cut(s) 249, 301
AgeI ACCGGT 1 cut(s) 325
AgsI TTSAA 3 cut(s) 119, 256, 265
AjnI CCWGG 2 cut(s) 283, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 4 cut(s) 68, 259, 356, 441
AluI AGCT 4 cut(s) 68, 259, 356, 441
AlwI GGATC 3 cut(s) 368, 381, 537
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 2 cut(s) 313, 513
ApeKI GCWGC 1 cut(s) 160
AsiGI ACCGGT 1 cut(s) 325
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 40, 313
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 340, 418
AsuII TTCGAA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 40
BamHI GGATCC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 226
BarI GAAGNNNNNNTAC 2 cut(s) 609, 641
BbvI GCAGC 1 cut(s) 172
BccI CCATC 1 cut(s) 439
BciT130I CCWGG 2 cut(s) 285, 686
BcnI CCSGG 1 cut(s) 317
BfoI RGCGCY 1 cut(s) 230
BisI GCNGC 2 cut(s) 123, 161
BlsI GCNGC 2 cut(s) 124, 162
Bme1390I CCNGG 3 cut(s) 285, 317, 686
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 40, 313
BmiI GGNNCC 3 cut(s) 41, 228, 375
BmrFI CCNGG 3 cut(s) 285, 317, 686
BmsI GCATC 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 661
BsaAI YACGTR 1 cut(s) 701
BsaBI GATNNNNATC 1 cut(s) 657
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 4 cut(s) 283, 284, 295, 516
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 301
Bse118I RCCGGY 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 657
BseBI CCWGG 2 cut(s) 285, 686
BseCI ATCGAT 1 cut(s) 661
BseDI CCNNGG 4 cut(s) 283, 284, 295, 516
BseGI GGATG 3 cut(s) 205, 571, 686
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 2 cut(s) 249, 301
BseMII CTCAG 1 cut(s) 638
BseRI GAGGAG 9 cut(s) 27, 209, 416, 424, 431, 434, 449, 464, 590
BseXI GCAGC 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 350
BshFI GGCC 2 cut(s) 315, 515
BshNI GGYRCC 1 cut(s) 226
BshTI ACCGGT 1 cut(s) 325
BshVI ATCGAT 1 cut(s) 661
BsiEI CGRYCG 1 cut(s) 350
BsiSI CCGG 3 cut(s) 316, 326, 343
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 249, 301
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 2 cut(s) 315, 515
Bsp119I TTCGAA 1 cut(s) 95
Bsp143I GATC 2 cut(s) 373, 529
BspACI CCGC 6 cut(s) 5, 123, 236, 346, 481, 521
BspANI GGCC 2 cut(s) 315, 515
BspCNI CTCAG 1 cut(s) 639
BspDI ATCGAT 1 cut(s) 661
BspLI GGNNCC 3 cut(s) 41, 228, 375
BspPI GGATC 3 cut(s) 368, 381, 537
BspT104I TTCGAA 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 4 cut(s) 283, 284, 295, 516
BssMI GATC 2 cut(s) 373, 529
BssNAI GTATAC 1 cut(s) 279
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 295, 516
Bst1107I GTATAC 1 cut(s) 279
Bst2UI CCWGG 2 cut(s) 285, 686
Bst4CI ACNGT 1 cut(s) 477
Bst6I CTCTTC 8 cut(s) 383, 389, 419, 567, 588, 594, 612, 677
BstACI GRCGYC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 701
BstBI TTCGAA 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 126, 647
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 3 cut(s) 205, 571, 686
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 376, 532
BstMBI GATC 2 cut(s) 373, 529
BstMCI CGRYCG 1 cut(s) 350
BstMWI GCNNNNNNNGC 4 cut(s) 160, 235, 265, 690
BstNI CCWGG 2 cut(s) 285, 686
BstSCI CCNGG 3 cut(s) 283, 315, 684
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BstZ17I GTATAC 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 661
BsuRI GGCC 2 cut(s) 315, 515
BsuTUI ATCGAT 1 cut(s) 661
BtsCI GGATG 3 cut(s) 205, 571, 686
BtsIMutI CAGTG 2 cut(s) 143, 482
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 40, 313
ClaI ATCGAT 1 cut(s) 661
Csp6I GTAC 1 cut(s) 698
CspAI ACCGGT 1 cut(s) 325
CviAII CATG 1 cut(s) 34
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 2 cut(s) 126, 647
DinI GGCGCC 1 cut(s) 228
DpnI GATC 2 cut(s) 375, 531
DpnII GATC 2 cut(s) 373, 529
Eam1104I CTCTTC 8 cut(s) 383, 389, 419, 567, 588, 594, 612, 677
EarI CTCTTC 8 cut(s) 383, 389, 419, 567, 588, 594, 612, 677
EciI GGCGGA 2 cut(s) 20, 496
Eco130I CCWWGG 2 cut(s) 295, 516
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 40
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 283, 684
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 2 cut(s) 295, 516
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
ErhI CCWWGG 2 cut(s) 295, 516
FaeI CATG 1 cut(s) 37
FaiI YATR 7 cut(s) 35, 221, 248, 279, 381, 695, 712
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 33
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 123, 161
FokI GGATG 3 cut(s) 212, 578, 693
Fsp4HI GCNGC 2 cut(s) 123, 161
GlaI GCGC 1 cut(s) 228
GluI GCNGC 2 cut(s) 123, 161
GsuI CTGGAG 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 2 cut(s) 315, 515
HapII CCGG 3 cut(s) 316, 326, 343
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 2 cut(s) 66, 257
HinfI GANTC 2 cut(s) 484, 587
HpaII CCGG 3 cut(s) 316, 326, 343
HphI GGTGA 2 cut(s) 340, 418
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 2 cut(s) 489, 592
Hpy188III TCNNGA 4 cut(s) 48, 62, 82, 351
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 2 cut(s) 295, 325
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 2 cut(s) 209, 700
HpyCH4V TGCA 1 cut(s) 710
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 235, 265, 690
HpyF3I CTNAG 2 cut(s) 126, 647
HpySE526I ACGT 2 cut(s) 209, 700
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 227
KasI GGCGCC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 373, 529
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 671
MaeII ACGT 2 cut(s) 209, 700
MaeIII GTNAC 1 cut(s) 471
MalI GATC 2 cut(s) 375, 531
MboI GATC 2 cut(s) 373, 529
MflI RGATCY 1 cut(s) 373
MluCI AATT 3 cut(s) 148, 360, 502
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 3 cut(s) 267, 516, 570
MseI TTAA 2 cut(s) 501, 507
MspI CCGG 3 cut(s) 316, 326, 343
MspR9I CCNGG 3 cut(s) 285, 317, 686
MvaI CCWGG 2 cut(s) 285, 686
MwoI GCNNNNNNNGC 4 cut(s) 160, 235, 265, 690
NarI GGCGCC 1 cut(s) 227
NciI CCSGG 1 cut(s) 317
NdeII GATC 2 cut(s) 373, 529
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 3 cut(s) 41, 228, 375
NmuCI GTSAC 1 cut(s) 471
NspV TTCGAA 1 cut(s) 95
PasI CCCWGGG 1 cut(s) 284
PfeI GAWTC 1 cut(s) 484
PinAI ACCGGT 1 cut(s) 325
PkrI GCNGC 2 cut(s) 124, 162
PleI GAGTC 1 cut(s) 595
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 595
Ppu21I YACGTR 1 cut(s) 701
PpuMI RGGWCCY 1 cut(s) 40
Psp1406I AACGTT 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 283, 684
PspGI CCWGG 2 cut(s) 283, 684
PspN4I GGNNCC 3 cut(s) 41, 228, 375
PspPI GGNCC 2 cut(s) 40, 313
PspPPI RGGWCCY 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
SaqAI TTAA 2 cut(s) 501, 507
SatI GCNGC 2 cut(s) 123, 161
Sau3AI GATC 2 cut(s) 373, 529
Sau96I GGNCC 2 cut(s) 40, 313
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 3 cut(s) 285, 317, 686
SfaNI GCATC 1 cut(s) 671
SfoI GGCGCC 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 95
SinI GGWCC 1 cut(s) 40
Sse9I AATT 3 cut(s) 148, 360, 502
SsiI CCGC 6 cut(s) 5, 123, 236, 346, 481, 521
SspDI GGCGCC 1 cut(s) 226
StyD4I CCNGG 3 cut(s) 283, 315, 684
StyI CCWWGG 2 cut(s) 295, 516
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 2 cut(s) 212, 703
TaqI TCGA 5 cut(s) 49, 83, 95, 350, 661
TasI AATT 3 cut(s) 148, 360, 502
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 2 cut(s) 501, 507
Tru9I TTAA 2 cut(s) 501, 507
TscAI CASTG 2 cut(s) 150, 482
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 2 cut(s) 656, 669
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 2 cut(s) 150, 482
VpaK11BI GGWCC 1 cut(s) 40
XagI CCTNNNNNAGG 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.