RLG00000023510

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0013204
Physical Location & Seq
Forward (+)
24741145 .. 24743565
2421 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023510

Sequence Viewer

Length: 720 bp
ATGGCGGAAGGAGGGGAAGAAGATGACTACATGGGGGACCTCTCTCGATTTCTCTCTCCAGAAGCTTCCGTTCCTCTCTCGAAAAAGGTTTCGAATAGCAAAGCCTCTGGTGTTCAAGCCGCTAAGAAAAAAGCCAAAGCACTGAATTGGCAAGAGCAGCGTAAGATTGATAGGGAGAGAAAGCAACGAGAGGAGGATGAGAAAACGTTGGCGAATATAGAGGCGCCTATTCCGCAATCCAACATAGGGTTCAAGCTTTTGAAGCAAATGGGGTATACCCCAGGCTCTGCCCTTGGGAAGGAGGGGTCGGGCCGGGCTGAACCGGTGAAGGTTGATATCCGGCGGTCGAGAGCTGGAATTGGGAGGGAGGATCCTCATAAGGAGAAGAGGAAGAGAGAGGAGGTGAGGAGTGAGGAGGAGAAGAGGAATGAGGAGAGCTTGGTGGAGGAGTTTGGGTGGAGGAAGAAGTCACAGTGGCGGATTCGGAGAGTTGTGGTTAATTTTAACAAGGCCAAGGCGGTTTTGGATCAGTTGGAGAATAAGGAGGTTGTGCCGCCGGAGAAGAATGAGGATGAGGAAGAGGAGGGGGGAGACTCGGAAGAGGAAGAGGAACAGATTACAGAAGAGGATTTACAAGAGATATTGATGAAACTGAGAGATGAACATCGATACTGCCTCTTCTGTGGATGCCAGGTAAGCATAGTACGTGGCTGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

240

Amino Acids

27.4

Weight (kDa)

5.41

Isoelectric Point (pI)

78.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 75 - 123 5.1e-07 G-patch domain
G-patch PF01585 80 - 122 8.3e-16 G-patch domain
DUF4187 PF13821 199 - 231 1.4e-09 Domain of unknown function (DUF4187)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 275
AciI CCGC 7 cut(s) 5, 120, 233, 343, 478, 518, 554
AclI AACGTT 1 cut(s) 206
AclWI GGATC 3 cut(s) 365, 378, 534
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 1 cut(s) 705
AfiI CCNNNNNNNGG 2 cut(s) 246, 298
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 3 cut(s) 116, 253, 262
AjnI CCWGG 2 cut(s) 280, 690
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 65, 256, 353, 438
AluI AGCT 4 cut(s) 65, 256, 353, 438
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 3 cut(s) 365, 378, 534
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 2 cut(s) 310, 510
ApeKI GCWGC 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 322
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 37, 310
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 337, 415
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 37
BamHI GGATCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 2 cut(s) 282, 692
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 585
BfoI RGCGCY 1 cut(s) 227
BisI GCNGC 3 cut(s) 120, 158, 554
BlsI GCNGC 3 cut(s) 121, 159, 555
Bme1390I CCNGG 3 cut(s) 282, 314, 692
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 310
BmiI GGNNCC 3 cut(s) 38, 225, 372
BmrFI CCNGG 3 cut(s) 282, 314, 692
BmsI GCATC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 667
BsaAI YACGTR 1 cut(s) 707
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 280, 292, 513
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 298
Bse118I RCCGGY 1 cut(s) 322
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 2 cut(s) 282, 692
BseCI ATCGAT 1 cut(s) 667
BseDI CCNNGG 3 cut(s) 280, 292, 513
BseGI GGATG 3 cut(s) 202, 577, 692
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 246, 298
BseMII CTCAG 1 cut(s) 644
BseRI GAGGAG 8 cut(s) 206, 413, 421, 428, 431, 446, 461, 596
BseXI GCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 2 cut(s) 312, 512
BshNI GGYRCC 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 322
BshVI ATCGAT 1 cut(s) 667
BsiEI CGRYCG 1 cut(s) 347
BsiSI CCGG 4 cut(s) 313, 323, 340, 557
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 246, 298
BsmAI GTCTC 1 cut(s) 585
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 312, 512
Bsp119I TTCGAA 1 cut(s) 92
Bsp143I GATC 2 cut(s) 370, 526
BspACI CCGC 7 cut(s) 5, 120, 233, 343, 478, 518, 554
BspANI GGCC 2 cut(s) 312, 512
BspCNI CTCAG 1 cut(s) 645
BspDI ATCGAT 1 cut(s) 667
BspLI GGNNCC 3 cut(s) 38, 225, 372
BspPI GGATC 3 cut(s) 365, 378, 534
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 3 cut(s) 280, 292, 513
BssMI GATC 2 cut(s) 370, 526
BssNAI GTATAC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 292, 513
Bst1107I GTATAC 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 282, 692
Bst4CI ACNGT 1 cut(s) 474
Bst6I CTCTTC 8 cut(s) 380, 386, 416, 573, 594, 600, 618, 683
BstACI GRCGYC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 123, 653
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 202, 577, 692
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 373, 529
BstMAI GTCTC 1 cut(s) 585
BstMBI GATC 2 cut(s) 370, 526
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 4 cut(s) 157, 232, 262, 696
BstNI CCWGG 2 cut(s) 282, 692
BstSCI CCNGG 3 cut(s) 280, 312, 690
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 667
BsuRI GGCC 2 cut(s) 312, 512
BsuTUI ATCGAT 1 cut(s) 667
BtsCI GGATG 3 cut(s) 202, 577, 692
BtsIMutI CAGTG 2 cut(s) 140, 479
CaiI CAGNNNCTG 1 cut(s) 287
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 37, 310
ClaI ATCGAT 1 cut(s) 667
Csp6I GTAC 1 cut(s) 704
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 1 cut(s) 31
CviQI GTAC 1 cut(s) 704
DdeI CTNAG 2 cut(s) 123, 653
DinI GGCGCC 1 cut(s) 225
DpnI GATC 2 cut(s) 372, 528
DpnII GATC 2 cut(s) 370, 526
Eam1104I CTCTTC 8 cut(s) 380, 386, 416, 573, 594, 600, 618, 683
EarI CTCTTC 8 cut(s) 380, 386, 416, 573, 594, 600, 618, 683
EciI GGCGGA 2 cut(s) 20, 493
Eco130I CCWWGG 2 cut(s) 292, 513
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 280, 690
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 292, 513
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 292, 513
FaeI CATG 1 cut(s) 34
FaiI YATR 7 cut(s) 32, 218, 245, 276, 378, 701, 718
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 3 cut(s) 120, 158, 554
FokI GGATG 3 cut(s) 209, 584, 699
Fsp4HI GCNGC 3 cut(s) 120, 158, 554
GlaI GCGC 1 cut(s) 225
GluI GCNGC 3 cut(s) 120, 158, 554
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 2 cut(s) 312, 512
HapII CCGG 4 cut(s) 313, 323, 340, 557
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HindIII AAGCTT 2 cut(s) 63, 254
HinfI GANTC 2 cut(s) 481, 593
HpaII CCGG 4 cut(s) 313, 323, 340, 557
HphI GGTGA 2 cut(s) 337, 415
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 486, 598
Hpy188III TCNNGA 4 cut(s) 45, 59, 79, 348
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 292, 322
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4IV ACGT 2 cut(s) 206, 706
HpyCH4V TGCA 1 cut(s) 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 157, 232, 262, 696
HpyF3I CTNAG 2 cut(s) 123, 653
HpySE526I ACGT 2 cut(s) 206, 706
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 224
KasI GGCGCC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 370, 526
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 677
MaeII ACGT 2 cut(s) 206, 706
MaeIII GTNAC 1 cut(s) 468
MalI GATC 2 cut(s) 372, 528
MboI GATC 2 cut(s) 370, 526
MflI RGATCY 1 cut(s) 370
MluCI AATT 3 cut(s) 145, 357, 499
Mly113I GGCGCC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 264, 513
MseI TTAA 2 cut(s) 498, 504
MspI CCGG 4 cut(s) 313, 323, 340, 557
MspR9I CCNGG 3 cut(s) 282, 314, 692
MvaI CCWGG 2 cut(s) 282, 692
MwoI GCNNNNNNNGC 4 cut(s) 157, 232, 262, 696
NarI GGCGCC 1 cut(s) 224
NciI CCSGG 1 cut(s) 314
NdeII GATC 2 cut(s) 370, 526
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 3 cut(s) 38, 225, 372
NmuCI GTSAC 1 cut(s) 468
NspV TTCGAA 1 cut(s) 92
PfeI GAWTC 1 cut(s) 481
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 3 cut(s) 121, 159, 555
PleI GAGTC 1 cut(s) 587
PluTI GGCGCC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 587
Ppu21I YACGTR 1 cut(s) 707
PpuMI RGGWCCY 1 cut(s) 37
Psp1406I AACGTT 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 280, 690
PspGI CCWGG 2 cut(s) 280, 690
PspN4I GGNNCC 3 cut(s) 38, 225, 372
PspPI GGNCC 2 cut(s) 37, 310
PspPPI RGGWCCY 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 705
RsaNI GTAC 1 cut(s) 704
SaqAI TTAA 2 cut(s) 498, 504
SatI GCNGC 3 cut(s) 120, 158, 554
Sau3AI GATC 2 cut(s) 370, 526
Sau96I GGNCC 2 cut(s) 37, 310
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 3 cut(s) 282, 314, 692
SfaNI GCATC 1 cut(s) 677
SfoI GGCGCC 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 37
Sse9I AATT 3 cut(s) 145, 357, 499
SsiI CCGC 7 cut(s) 5, 120, 233, 343, 478, 518, 554
SspDI GGCGCC 1 cut(s) 223
StyD4I CCNGG 3 cut(s) 280, 312, 690
StyI CCWWGG 2 cut(s) 292, 513
TaaI ACNGT 1 cut(s) 474
TaiI ACGT 2 cut(s) 209, 709
TaqI TCGA 5 cut(s) 46, 80, 92, 347, 667
TasI AATT 3 cut(s) 145, 357, 499
TauI GCSGC 2 cut(s) 122, 556
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 2 cut(s) 498, 504
Tru9I TTAA 2 cut(s) 498, 504
TscAI CASTG 2 cut(s) 147, 479
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 2 cut(s) 662, 675
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 147, 479
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.