FvH4_6g22250

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013204
Physical Location & Seq
Reverse (-)
15895400 .. 15897979
2580 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22250.t1

Sequence Viewer

Length: 489 bp
ATGGCGGAAGACGATGACTACATGGGGGACCTCTCTCGGTTTCTCTCTCCAGAAGCTTCCGGTCCTCTCTCAAAAAAGGTTTCGAATAGCAAAGCCTCGATTGTGCAACCCTCTAGGGAGAAACCTAAAGCTCTGAATTGGCAAGAGCAGCGTAAGATTGATAGGGAGAGAAAGCAACAGGAAGAGGATGAGGAAACCCTGGCGAATATAGAGGCGCCGATTCCGCAGTCCAGCATAGGTTTCAAGCTTTTGAAGCAAATGGGGTATACACCAGGTACTGCCCTGGGGAAGGAGGGTCTGGGCCAGGCTGAACCGGTGAAGGTTGATATTCGGCGGTCGAGAGCTGGAATTGGGAGGGAGGATCCGAGTAAGGAGAAAAGGAAGAGAGAGGAGATGAGGAGTGTGGAGGAGAAGAGGAATGAGGAGAGCTTGATGGAGGAGTTTGAGTCAAGGAAGAAGTCGCAGGTGAATTCGGAGAGTTGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

163

Amino Acids

18.37

Weight (kDa)

5.84

Isoelectric Point (pI)

76.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 71 - 120 1.4e-06 G-patch domain
G-patch PF01585 77 - 119 1.7e-14 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 266
AciI CCGC 3 cut(s) 5, 224, 334
AclWI GGATC 2 cut(s) 356, 369
AcsI RAATTY 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 313
AgsI TTSAA 2 cut(s) 244, 253
AjnI CCWGG 4 cut(s) 198, 271, 282, 303
AluBI AGCT 5 cut(s) 56, 131, 247, 344, 429
AluI AGCT 5 cut(s) 56, 131, 247, 344, 429
AlwI GGATC 2 cut(s) 356, 369
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 469
AsiGI ACCGGT 1 cut(s) 313
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 3 cut(s) 28, 62, 301
AsuHPI GGTGA 2 cut(s) 328, 478
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 2 cut(s) 28, 62
BamHI GGATCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 427
BciT130I CCWGG 4 cut(s) 200, 273, 284, 305
BfaI CTAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 4 cut(s) 200, 273, 284, 305
Bme18I GGWCC 2 cut(s) 28, 62
BmgT120I GGNCC 3 cut(s) 28, 62, 301
BmiI GGNNCC 3 cut(s) 29, 216, 363
BmrFI CCNGG 4 cut(s) 200, 273, 284, 305
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 198, 282, 283
BsaWI WCCGGW 2 cut(s) 59, 313
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 313
BseBI CCWGG 4 cut(s) 200, 273, 284, 305
BseDI CCNNGG 3 cut(s) 198, 282, 283
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 289
BseRI GAGGAG 5 cut(s) 404, 412, 422, 437, 452
BseXI GCAGC 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 338
BsiSI CCGG 2 cut(s) 60, 314
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 1 cut(s) 303
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 3 cut(s) 5, 224, 334
BspANI GGCC 1 cut(s) 303
BspLI GGNNCC 3 cut(s) 29, 216, 363
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 2 cut(s) 356, 369
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 198, 282, 283
BssMI GATC 1 cut(s) 361
BssNAI GTATAC 1 cut(s) 267
BssNI GRCGYC 1 cut(s) 215
Bst1107I GTATAC 1 cut(s) 267
Bst2UI CCWGG 4 cut(s) 200, 273, 284, 305
Bst6I CTCTTC 3 cut(s) 177, 377, 407
BstACI GRCGYC 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 3 cut(s) 148, 223, 253
BstNI CCWGG 4 cut(s) 200, 273, 284, 305
BstSCI CCNGG 4 cut(s) 198, 271, 282, 303
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 193
BveI ACCTGC 1 cut(s) 454
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 3 cut(s) 28, 62, 301
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 1 cut(s) 276
CspAI ACCGGT 1 cut(s) 313
CviAII CATG 1 cut(s) 22
CviJI RGCY 8 cut(s) 56, 95, 131, 247, 303, 308, 344, 429
CviKI_1 RGCY 8 cut(s) 56, 95, 131, 247, 303, 308, 344, 429
CviQI GTAC 1 cut(s) 276
DinI GGCGCC 1 cut(s) 216
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 3 cut(s) 177, 377, 407
EarI CTCTTC 3 cut(s) 177, 377, 407
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 28, 62
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 469
EcoRII CCWGG 4 cut(s) 198, 271, 282, 303
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 209, 236, 267
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 1 cut(s) 303
HapII CCGG 2 cut(s) 60, 314
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HindIII AAGCTT 2 cut(s) 54, 245
HinfI GANTC 2 cut(s) 220, 446
HpaII CCGG 2 cut(s) 60, 314
HphI GGTGA 2 cut(s) 328, 478
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 135, 366, 475
Hpy188III TCNNGA 2 cut(s) 50, 339
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 2 cut(s) 283, 313
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 223, 253
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 215
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 361
Lsp1109I GCAGC 1 cut(s) 160
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 1 cut(s) 114
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 5 cut(s) 20, 194, 394, 424, 466
MflI RGATCY 1 cut(s) 361
MluCI AATT 3 cut(s) 136, 348, 469
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 1 cut(s) 455
MseI TTAA 1 cut(s) 487
MspI CCGG 2 cut(s) 60, 314
MspR9I CCNGG 4 cut(s) 200, 273, 284, 305
MvaI CCWGG 4 cut(s) 200, 273, 284, 305
MwoI GCNNNNNNNGC 3 cut(s) 148, 223, 253
NarI GGCGCC 1 cut(s) 215
NdeII GATC 1 cut(s) 361
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 3 cut(s) 29, 216, 363
NspV TTCGAA 1 cut(s) 83
PaqCI CACCTGC 1 cut(s) 454
PasI CCCWGGG 1 cut(s) 283
PfeI GAWTC 1 cut(s) 220
PinAI ACCGGT 1 cut(s) 313
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 454
PluTI GGCGCC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 4 cut(s) 198, 271, 282, 303
PspGI CCWGG 4 cut(s) 198, 271, 282, 303
PspN4I GGNNCC 3 cut(s) 29, 216, 363
PspPI GGNCC 3 cut(s) 28, 62, 301
PspPPI RGGWCCY 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 3 cut(s) 28, 62, 301
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 4 cut(s) 200, 273, 284, 305
SexAI ACCWGGT 1 cut(s) 271
SfoI GGCGCC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 2 cut(s) 28, 62
Sse9I AATT 3 cut(s) 136, 348, 469
SsiI CCGC 3 cut(s) 5, 224, 334
SspDI GGCGCC 1 cut(s) 214
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 4 cut(s) 198, 271, 282, 303
TaqI TCGA 3 cut(s) 83, 98, 338
TasI AATT 3 cut(s) 136, 348, 469
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TseI GCWGC 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 28, 62
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 266
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.