Rmu_sc0032341.1_g000002

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032341.1
OG0013204
Physical Location & Seq
Forward (+)
1188 .. 1956
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032341.1_g000002.1.cds

Sequence Viewer

Length: 690 bp
atggcggaaggaggggaagaagatgactacatgggggacctctctcgatttctctctccagaagcttccgttcctctctcgaaaaaggtttcgaatagcaaagcctctggtgttcaagccgctaagaaaaaacccaaagcgctgaattggcaagagcagcgtaagattgatagggagagaaagcaacgagaggaggatgagaaaacgttggcgaatatagaggcgcctattccgcaatccaacatagggttcaagcttttgaagcaaatggggtataccccaggctctgcccttgggaaggaggggtcgggccgggctgaaccggtgaaggttgatatccggcggtcgagagctggaattgggagggaggatcctcataaggagaagaggaagagagaggaggtgaggagtgaggaggagaagaggaatgaggagagcttgatggaggagtttgggtggaggaagaagtcacagtggcggattcggagagttgtggttaattttcacaaggccaaggcggttttggatcagttggagaacaaggaggttgtgccgccggagaagaatgaggatgaggaagaggaggggggagagtcggaagaggaagaggaacagattacagaagaggtacggttcttgagtgattgtgtttcttttattcgaagatgggtctggttgagcataatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

229

Amino Acids

26.49

Weight (kDa)

5.63

Isoelectric Point (pI)

81.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 275
AciI CCGC 7 cut(s) 5, 120, 233, 343, 478, 518, 554
AclI AACGTT 1 cut(s) 206
AclWI GGATC 3 cut(s) 365, 378, 534
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 1 cut(s) 630
AfeI AGCGCT 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 246, 298
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 3 cut(s) 116, 253, 262
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 65, 256, 353, 438
AluI AGCT 4 cut(s) 65, 256, 353, 438
AlwI GGATC 3 cut(s) 365, 378, 534
AlwNI CAGNNNCTG 1 cut(s) 287
Aor51HI AGCGCT 1 cut(s) 141
AoxI GGCC 2 cut(s) 310, 510
ApeKI GCWGC 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 322
AspLEI GCGC 2 cut(s) 142, 226
AspS9I GGNCC 2 cut(s) 37, 310
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 337, 415
AsuII TTCGAA 2 cut(s) 92, 661
AvaII GGWCC 1 cut(s) 37
BamHI GGATCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 436, 660
BciT130I CCWGG 1 cut(s) 282
BcnI CCSGG 1 cut(s) 314
BfoI RGCGCY 2 cut(s) 143, 227
BisI GCNGC 3 cut(s) 120, 158, 554
BlsI GCNGC 3 cut(s) 121, 159, 555
Bme1390I CCNGG 2 cut(s) 282, 314
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 310
BmiI GGNNCC 3 cut(s) 38, 225, 372
BmrFI CCNGG 2 cut(s) 282, 314
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 2 cut(s) 92, 661
BpuEI CTTGAG 1 cut(s) 658
BpuMI CCSGG 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 280, 292, 513
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 298
Bse118I RCCGGY 1 cut(s) 322
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 280, 292, 513
BseGI GGATG 2 cut(s) 202, 577
BseLI CCNNNNNNNGG 2 cut(s) 246, 298
BseRI GAGGAG 8 cut(s) 206, 413, 421, 428, 431, 446, 461, 596
BseXI GCAGC 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 2 cut(s) 312, 512
BshNI GGYRCC 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 347
BsiSI CCGG 4 cut(s) 313, 323, 340, 557
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 246, 298
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 312, 512
Bsp119I TTCGAA 2 cut(s) 92, 661
Bsp143I GATC 2 cut(s) 370, 526
BspACI CCGC 7 cut(s) 5, 120, 233, 343, 478, 518, 554
BspANI GGCC 2 cut(s) 312, 512
BspLI GGNNCC 3 cut(s) 38, 225, 372
BspPI GGATC 3 cut(s) 365, 378, 534
BspT104I TTCGAA 2 cut(s) 92, 661
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 322
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 3 cut(s) 280, 292, 513
BssMI GATC 2 cut(s) 370, 526
BssNAI GTATAC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 292, 513
Bst1107I GTATAC 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 474, 633
Bst6I CTCTTC 7 cut(s) 380, 386, 416, 573, 594, 600, 618
BstACI GRCGYC 1 cut(s) 224
BstBI TTCGAA 2 cut(s) 92, 661
BstDEI CTNAG 1 cut(s) 123
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 2 cut(s) 202, 577
BstH2I RGCGCY 2 cut(s) 143, 227
BstHHI GCGC 2 cut(s) 142, 226
BstKTI GATC 2 cut(s) 373, 529
BstMBI GATC 2 cut(s) 370, 526
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 4 cut(s) 148, 157, 232, 262
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 280, 312
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 276
BsuRI GGCC 2 cut(s) 312, 512
BtsCI GGATG 2 cut(s) 202, 577
BtsIMutI CAGTG 1 cut(s) 479
CaiI CAGNNNCTG 1 cut(s) 287
CfoI GCGC 2 cut(s) 142, 226
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 37, 310
Csp6I GTAC 1 cut(s) 629
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 1 cut(s) 31
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 1 cut(s) 123
DinI GGCGCC 1 cut(s) 225
DpnI GATC 2 cut(s) 372, 528
DpnII GATC 2 cut(s) 370, 526
Eam1104I CTCTTC 7 cut(s) 380, 386, 416, 573, 594, 600, 618
EarI CTCTTC 7 cut(s) 380, 386, 416, 573, 594, 600, 618
EciI GGCGGA 2 cut(s) 20, 493
Eco130I CCWWGG 2 cut(s) 292, 513
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 2 cut(s) 292, 513
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 292, 513
FaeI CATG 1 cut(s) 34
FaiI YATR 6 cut(s) 32, 218, 245, 276, 378, 683
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 3 cut(s) 120, 158, 554
FokI GGATG 2 cut(s) 209, 584
Fsp4HI GCNGC 3 cut(s) 120, 158, 554
GlaI GCGC 2 cut(s) 141, 225
GluI GCNGC 3 cut(s) 120, 158, 554
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 2 cut(s) 143, 227
HaeIII GGCC 2 cut(s) 312, 512
HapII CCGG 4 cut(s) 313, 323, 340, 557
HhaI GCGC 2 cut(s) 142, 226
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 2 cut(s) 140, 224
HinP1I GCGC 2 cut(s) 140, 224
HindIII AAGCTT 2 cut(s) 63, 254
HinfI GANTC 2 cut(s) 481, 593
HpaII CCGG 4 cut(s) 313, 323, 340, 557
HphI GGTGA 2 cut(s) 337, 415
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 2 cut(s) 486, 598
Hpy188III TCNNGA 5 cut(s) 45, 59, 79, 348, 637
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 2 cut(s) 292, 322
HpyCH4III ACNGT 2 cut(s) 474, 633
HpyCH4IV ACGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 157, 232, 262
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 2 cut(s) 140, 224
KasI GGCGCC 1 cut(s) 223
Kzo9I GATC 2 cut(s) 370, 526
Lsp1109I GCAGC 1 cut(s) 169
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 468
MalI GATC 2 cut(s) 372, 528
MboI GATC 2 cut(s) 370, 526
MflI RGATCY 1 cut(s) 370
MluCI AATT 4 cut(s) 145, 357, 499, 684
Mly113I GGCGCC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 3 cut(s) 264, 513, 576
MseI TTAA 1 cut(s) 498
MspI CCGG 4 cut(s) 313, 323, 340, 557
MspR9I CCNGG 2 cut(s) 282, 314
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 4 cut(s) 148, 157, 232, 262
NarI GGCGCC 1 cut(s) 224
NciI CCSGG 1 cut(s) 314
NdeII GATC 2 cut(s) 370, 526
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 3 cut(s) 38, 225, 372
NmuCI GTSAC 1 cut(s) 468
NspV TTCGAA 2 cut(s) 92, 661
PfeI GAWTC 1 cut(s) 481
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 3 cut(s) 121, 159, 555
PleI GAGTC 1 cut(s) 601
PluTI GGCGCC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 601
PpuMI RGGWCCY 1 cut(s) 37
Psp1406I AACGTT 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 38, 225, 372
PspPI GGNCC 2 cut(s) 37, 310
PspPPI RGGWCCY 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 3 cut(s) 120, 158, 554
Sau3AI GATC 2 cut(s) 370, 526
Sau96I GGNCC 2 cut(s) 37, 310
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 282, 314
SfoI GGCGCC 1 cut(s) 225
SfuI TTCGAA 2 cut(s) 92, 661
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
Sse9I AATT 4 cut(s) 145, 357, 499, 684
SsiI CCGC 7 cut(s) 5, 120, 233, 343, 478, 518, 554
SspDI GGCGCC 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 280, 312
StyI CCWWGG 2 cut(s) 292, 513
TaaI ACNGT 2 cut(s) 474, 633
TaiI ACGT 1 cut(s) 209
TaqI TCGA 5 cut(s) 46, 80, 92, 347, 661
TasI AATT 4 cut(s) 145, 357, 499, 684
TauI GCSGC 2 cut(s) 122, 556
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TscAI CASTG 1 cut(s) 479
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 468
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XmiI GTMKAC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.