Rh3AG232900

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013204
Physical Location & Seq
Reverse (-)
24025905 .. 24027473
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG232900.1

Sequence Viewer

Length: 711 bp
ATGGCGGAAGAAGATGACTACATGGGGGACCTCTCTCGATTTCTCTCTCCAGAAGCTTCCGTTCCTCTCTCGAAAAAGGTTTCGAATAGCAAAGCCTCTGGTGTTCAAGCCGCTAAGAAAAAACCCAAAGCGCTGAATTGGCAAGAGCAGCGTAAGATTGATAGGGAGAGAAAGCAACGAGAGGAGGATGAGAAAACGTTGGCGAATATAGAGGCGCCTATTCCTCAATCCAACATAGGGTTCAAGCTTTTGAAGCAAATGGGGTATACCCCAGGCTCTGCCCTTGGGAAGGAGGGGTCGGGCCTGGCTGAACCGGTGAAGGTTGATATCCGGCGGTCGAGAGCTGGAATTGGGAGGGAGGATCCTCATAAGGAGAAGAGGAAGAGAGAGGAGGTGAGGAGTGAGGAGGAGAAGAGGAATGAGGAGAGCTTGATGGAGGAGTTTGGGTGGAGGAAGAAGTCACAGTGGCGGATTCGGAGAGTTGTGGTTAATTTTCACAAGGCCAAGGCGGTTTTGGATCAGTTGGAGAATAAGGAGGTTGTGCCGCCGGAGAAGAATGAGGATGAGGAAGAGGAGGGGGGAGAGTCGGAAGAGGAAGAGGAACAGATTACGGAAGAGGATTTACAAGAGATATTGATGAAACTGAGAGATGAACATCGATACTGCCTCTTCTGTGGATGCCAGGTAAGCATAGTACGTGGCTGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

236

Amino Acids

27.21

Weight (kDa)

5.49

Isoelectric Point (pI)

78.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 72 - 120 1.6e-06 G-patch domain
G-patch PF01585 77 - 119 2.4e-15 G-patch domain
DUF4187 PF13821 195 - 228 9.4e-10 Domain of unknown function (DUF4187)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccI GTMKAC 1 cut(s) 266
AciI CCGC 6 cut(s) 5, 111, 334, 469, 509, 545
AclI AACGTT 1 cut(s) 197
AclWI GGATC 3 cut(s) 356, 369, 525
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 1 cut(s) 696
AfeI AGCGCT 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 237, 289
AgeI ACCGGT 1 cut(s) 313
AgsI TTSAA 3 cut(s) 107, 244, 253
AjnI CCWGG 3 cut(s) 271, 303, 681
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 4 cut(s) 56, 247, 344, 429
AluI AGCT 4 cut(s) 56, 247, 344, 429
AlwI GGATC 3 cut(s) 356, 369, 525
AlwNI CAGNNNCTG 1 cut(s) 278
Aor51HI AGCGCT 1 cut(s) 132
AoxI GGCC 2 cut(s) 301, 501
ApeKI GCWGC 1 cut(s) 148
AsiGI ACCGGT 1 cut(s) 313
AspLEI GCGC 2 cut(s) 133, 217
AspS9I GGNCC 2 cut(s) 28, 301
AsuHPI GGTGA 2 cut(s) 328, 406
AsuII TTCGAA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 28
BamHI GGATCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 427
BciT130I CCWGG 3 cut(s) 273, 305, 683
BfoI RGCGCY 2 cut(s) 134, 218
BisI GCNGC 3 cut(s) 111, 149, 545
BlsI GCNGC 3 cut(s) 112, 150, 546
Bme1390I CCNGG 3 cut(s) 273, 305, 683
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 301
BmiI GGNNCC 3 cut(s) 29, 216, 363
BmrFI CCNGG 3 cut(s) 273, 305, 683
BmsI GCATC 1 cut(s) 668
BpmI CTGGAG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 698
BsaBI GATNNNNATC 1 cut(s) 654
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 271, 283, 504
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 289
Bse118I RCCGGY 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 3 cut(s) 273, 305, 683
BseCI ATCGAT 1 cut(s) 658
BseDI CCNNGG 3 cut(s) 271, 283, 504
BseGI GGATG 3 cut(s) 193, 568, 683
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 2 cut(s) 237, 289
BseMII CTCAG 1 cut(s) 635
BseRI GAGGAG 8 cut(s) 197, 404, 412, 419, 422, 437, 452, 587
BseXI GCAGC 1 cut(s) 160
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 2 cut(s) 303, 503
BshNI GGYRCC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 313
BshVI ATCGAT 1 cut(s) 658
BsiEI CGRYCG 1 cut(s) 338
BsiSI CCGG 3 cut(s) 314, 331, 548
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 237, 289
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 2 cut(s) 303, 503
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 2 cut(s) 361, 517
BspACI CCGC 6 cut(s) 5, 111, 334, 469, 509, 545
BspANI GGCC 2 cut(s) 303, 503
BspCNI CTCAG 1 cut(s) 636
BspDI ATCGAT 1 cut(s) 658
BspLI GGNNCC 3 cut(s) 29, 216, 363
BspPI GGATC 3 cut(s) 356, 369, 525
BspT104I TTCGAA 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 271, 283, 504
BssMI GATC 2 cut(s) 361, 517
BssNAI GTATAC 1 cut(s) 267
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 283, 504
Bst1107I GTATAC 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 273, 305, 683
Bst4CI ACNGT 1 cut(s) 465
Bst6I CTCTTC 8 cut(s) 371, 377, 407, 564, 585, 591, 609, 674
BstACI GRCGYC 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 698
BstBI TTCGAA 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 114, 644
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 193, 568, 683
BstH2I RGCGCY 2 cut(s) 134, 218
BstHHI GCGC 2 cut(s) 133, 217
BstKTI GATC 2 cut(s) 364, 520
BstMBI GATC 2 cut(s) 361, 517
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 4 cut(s) 139, 148, 253, 687
BstNI CCWGG 3 cut(s) 273, 305, 683
BstSCI CCNGG 3 cut(s) 271, 303, 681
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 658
BsuRI GGCC 2 cut(s) 303, 503
BsuTUI ATCGAT 1 cut(s) 658
BtsCI GGATG 3 cut(s) 193, 568, 683
BtsIMutI CAGTG 1 cut(s) 470
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 2 cut(s) 133, 217
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 28, 301
ClaI ATCGAT 1 cut(s) 658
Csp6I GTAC 1 cut(s) 695
CspAI ACCGGT 1 cut(s) 313
CviAII CATG 1 cut(s) 22
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 2 cut(s) 114, 644
DinI GGCGCC 1 cut(s) 216
DpnI GATC 2 cut(s) 363, 519
DpnII GATC 2 cut(s) 361, 517
Eam1104I CTCTTC 8 cut(s) 371, 377, 407, 564, 585, 591, 609, 674
EarI CTCTTC 8 cut(s) 371, 377, 407, 564, 585, 591, 609, 674
EciI GGCGGA 2 cut(s) 20, 484
Eco130I CCWWGG 2 cut(s) 283, 504
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 28
Eco47III AGCGCT 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 3 cut(s) 271, 303, 681
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 283, 504
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 283, 504
FaeI CATG 1 cut(s) 25
FaiI YATR 7 cut(s) 23, 209, 236, 267, 369, 692, 709
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 21
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 3 cut(s) 111, 149, 545
FokI GGATG 3 cut(s) 200, 575, 690
Fsp4HI GCNGC 3 cut(s) 111, 149, 545
GlaI GCGC 2 cut(s) 132, 216
GluI GCNGC 3 cut(s) 111, 149, 545
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 2 cut(s) 134, 218
HaeIII GGCC 2 cut(s) 303, 503
HapII CCGG 3 cut(s) 314, 331, 548
HhaI GCGC 2 cut(s) 133, 217
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 2 cut(s) 131, 215
HinP1I GCGC 2 cut(s) 131, 215
HindIII AAGCTT 2 cut(s) 54, 245
HinfI GANTC 2 cut(s) 472, 584
HpaII CCGG 3 cut(s) 314, 331, 548
HphI GGTGA 2 cut(s) 328, 406
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 2 cut(s) 477, 589
Hpy188III TCNNGA 4 cut(s) 36, 50, 70, 339
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 2 cut(s) 283, 313
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4IV ACGT 2 cut(s) 197, 697
HpyCH4V TGCA 1 cut(s) 707
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 148, 253, 687
HpyF3I CTNAG 2 cut(s) 114, 644
HpySE526I ACGT 2 cut(s) 197, 697
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 2 cut(s) 131, 215
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 2 cut(s) 361, 517
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 668
MaeII ACGT 2 cut(s) 197, 697
MaeIII GTNAC 1 cut(s) 459
MalI GATC 2 cut(s) 363, 519
MboI GATC 2 cut(s) 361, 517
MflI RGATCY 1 cut(s) 361
MluCI AATT 3 cut(s) 136, 348, 490
Mly113I GGCGCC 1 cut(s) 215
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 3 cut(s) 255, 504, 567
MseI TTAA 1 cut(s) 489
MspI CCGG 3 cut(s) 314, 331, 548
MspR9I CCNGG 3 cut(s) 273, 305, 683
MvaI CCWGG 3 cut(s) 273, 305, 683
MwoI GCNNNNNNNGC 4 cut(s) 139, 148, 253, 687
NarI GGCGCC 1 cut(s) 215
NdeII GATC 2 cut(s) 361, 517
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 3 cut(s) 29, 216, 363
NmuCI GTSAC 1 cut(s) 459
NspV TTCGAA 1 cut(s) 83
PfeI GAWTC 1 cut(s) 472
PinAI ACCGGT 1 cut(s) 313
PkrI GCNGC 3 cut(s) 112, 150, 546
PleI GAGTC 1 cut(s) 592
PluTI GGCGCC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 592
Ppu21I YACGTR 1 cut(s) 698
PpuMI RGGWCCY 1 cut(s) 28
Psp1406I AACGTT 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 3 cut(s) 271, 303, 681
PspGI CCWGG 3 cut(s) 271, 303, 681
PspN4I GGNNCC 3 cut(s) 29, 216, 363
PspPI GGNCC 2 cut(s) 28, 301
PspPPI RGGWCCY 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 111, 149, 545
Sau3AI GATC 2 cut(s) 361, 517
Sau96I GGNCC 2 cut(s) 28, 301
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 3 cut(s) 273, 305, 683
SfaNI GCATC 1 cut(s) 668
SfoI GGCGCC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 1 cut(s) 28
Sse9I AATT 3 cut(s) 136, 348, 490
SsiI CCGC 6 cut(s) 5, 111, 334, 469, 509, 545
SspDI GGCGCC 1 cut(s) 214
StyD4I CCNGG 3 cut(s) 271, 303, 681
StyI CCWWGG 2 cut(s) 283, 504
TaaI ACNGT 1 cut(s) 465
TaiI ACGT 2 cut(s) 200, 700
TaqI TCGA 5 cut(s) 37, 71, 83, 338, 658
TasI AATT 3 cut(s) 136, 348, 490
TauI GCSGC 2 cut(s) 113, 547
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 2 cut(s) 653, 666
TspGWI ACGGA 2 cut(s) 49, 626
TspRI CASTG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.