Rroxscaffold_6G00401700

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013204
Physical Location & Seq
Forward (+)
24086878 .. 24088689
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401700.1

Sequence Viewer

Length: 753 bp
ATGGCGGAAGGAGGGGAAGAAGATGACTACATGGGGGACCTATCTCGATTTCTCTCTCCAGAAGCTTCCGTTCCTCTCTCGAAAAAGGATTCGAATATCAAAGCCTCGAGTGTTCAAGCGGCTAAGAAAAAACCGAAAGCACTGAATTGGCAAGAGCAGCGTAAGATTGATAGGGAGAGAAAGCAACGAGAGGAGGATGAGAAAACGTTGGCGAATATAGAGGCGCCTATTCCGCAATCCAACATAGGGTTCAAGCTTTTGAAGCAAATGGGGTATACCCCAGGCTCTGCCCTTGGGAAGGAGGGGTCGGGCCGGGCGGAACCGGTGAAGGTTGACATCCGGCGGTCGAGAGCTGGAATTGGGAGGGAGGATCCTCATAAGGAGAAGAGGAAGAGAGAGGAGGTGAGGAGTGAGGAGGAGAAGAGGAATGAGGAGAGCTTGATGGAGGAGTTTGGGTGGAGGAAGAAGTCACAGTGGCGGATTCGGAGAGTTGCGGTTAACTTTAACAAGGCCAAGGCGGTTTTGGATCAGTTGGAGAATAAGGAGGTTGTGCCGCAGGAGAAGAATGAGGATGAGGAAGAGGAGGGGGGAGAGTCGGAAGAGGAAGAGGAACAGATTACAGAAGAGGATTTACAAGAGATATTGATGAAACTGAGAGATGAACATCGATACTGCCTCTTCTGTGGATGCCAGTATGAATCAATGGAGGAACTATTATCCAGCTGCCCTGGAACTAATGAAGACGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

250

Amino Acids

28.9

Weight (kDa)

5.0

Isoelectric Point (pI)

83.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 75 - 123 5.4e-07 G-patch domain
G-patch PF01585 80 - 122 9e-16 G-patch domain
DUF4187 PF13821 198 - 250 3.3e-19 Domain of unknown function (DUF4187)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 275
AciI CCGC 9 cut(s) 5, 119, 233, 317, 343, 478, 494, 518, 554
AclI AACGTT 1 cut(s) 206
AclWI GGATC 3 cut(s) 365, 378, 534
AcyI GRCGYC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 246, 298
AgeI ACCGGT 1 cut(s) 322
AgsI TTSAA 3 cut(s) 116, 253, 262
AjnI CCWGG 2 cut(s) 280, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 5 cut(s) 65, 256, 353, 438, 723
AluI AGCT 5 cut(s) 65, 256, 353, 438, 723
AlwI GGATC 3 cut(s) 365, 378, 534
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 2 cut(s) 310, 510
ApeKI GCWGC 2 cut(s) 157, 723
AsiGI ACCGGT 1 cut(s) 322
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 37, 310
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 337, 415
AsuII TTCGAA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 1 cut(s) 37
BamHI GGATCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
BbsI GAAGAC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 169, 710
BccI CCATC 1 cut(s) 436
BciT130I CCWGG 2 cut(s) 282, 729
BcnI CCSGG 1 cut(s) 314
BfoI RGCGCY 1 cut(s) 227
BisI GCNGC 4 cut(s) 120, 158, 554, 724
BlsI GCNGC 4 cut(s) 121, 159, 555, 725
Bme1390I CCNGG 3 cut(s) 282, 314, 729
Bme18I GGWCC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 37, 310
BmiI GGNNCC 4 cut(s) 38, 225, 321, 372
BmrFI CCNGG 3 cut(s) 282, 314, 729
BmsI GCATC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 747
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 4 cut(s) 280, 292, 513, 727
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 298
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 2 cut(s) 282, 729
BseCI ATCGAT 1 cut(s) 667
BseDI CCNNGG 4 cut(s) 280, 292, 513, 727
BseGI GGATG 4 cut(s) 202, 336, 577, 692
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 246, 298
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 8 cut(s) 206, 413, 421, 428, 431, 446, 461, 596
BseXI GCAGC 2 cut(s) 169, 710
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 2 cut(s) 312, 512
BshNI GGYRCC 1 cut(s) 223
BshTI ACCGGT 1 cut(s) 322
BshVI ATCGAT 1 cut(s) 667
BsiEI CGRYCG 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 3 cut(s) 313, 323, 340
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 246, 298
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 312, 512
BsoBI CYCGRG 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 92
Bsp143I GATC 3 cut(s) 370, 526, 745
BspACI CCGC 9 cut(s) 5, 119, 233, 317, 343, 478, 494, 518, 554
BspANI GGCC 2 cut(s) 312, 512
BspCNI CTCAG 1 cut(s) 645
BspDI ATCGAT 1 cut(s) 667
BspLI GGNNCC 4 cut(s) 38, 225, 321, 372
BspPI GGATC 3 cut(s) 365, 378, 534
BspT104I TTCGAA 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 1 cut(s) 691
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 4 cut(s) 280, 292, 513, 727
BssMI GATC 3 cut(s) 370, 526, 745
BssNAI GTATAC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 292, 513
Bst1107I GTATAC 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 282, 729
Bst4CI ACNGT 1 cut(s) 474
Bst6I CTCTTC 8 cut(s) 380, 386, 416, 573, 594, 600, 618, 683
BstACI GRCGYC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 123, 653
BstENI CCTNNNNNAGG 1 cut(s) 296
BstF5I GGATG 4 cut(s) 202, 336, 577, 692
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 3 cut(s) 373, 529, 748
BstMBI GATC 3 cut(s) 370, 526, 745
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 3 cut(s) 157, 232, 262
BstNI CCWGG 2 cut(s) 282, 729
BstSCI CCNGG 3 cut(s) 280, 312, 727
BstV1I GCAGC 2 cut(s) 169, 710
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BstZ17I GTATAC 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 667
BsuRI GGCC 2 cut(s) 312, 512
BsuTUI ATCGAT 1 cut(s) 667
BtsCI GGATG 4 cut(s) 202, 336, 577, 692
BtsIMutI CAGTG 3 cut(s) 140, 479, 748
CaiI CAGNNNCTG 1 cut(s) 287
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 37, 310
ClaI ATCGAT 1 cut(s) 667
CspAI ACCGGT 1 cut(s) 322
CviAII CATG 1 cut(s) 31
DdeI CTNAG 2 cut(s) 123, 653
DinI GGCGCC 1 cut(s) 225
DpnI GATC 3 cut(s) 372, 528, 747
DpnII GATC 3 cut(s) 370, 526, 745
Eam1104I CTCTTC 8 cut(s) 380, 386, 416, 573, 594, 600, 618, 683
EarI CTCTTC 8 cut(s) 380, 386, 416, 573, 594, 600, 618, 683
EciI GGCGGA 3 cut(s) 20, 332, 493
Eco130I CCWWGG 2 cut(s) 292, 513
Eco47I GGWCC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 280, 727
EcoT14I CCWWGG 2 cut(s) 292, 513
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
ErhI CCWWGG 2 cut(s) 292, 513
FaeI CATG 1 cut(s) 34
FaiI YATR 6 cut(s) 32, 218, 245, 276, 378, 696
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 4 cut(s) 120, 158, 554, 724
FokI GGATG 4 cut(s) 209, 323, 584, 699
Fsp4HI GCNGC 4 cut(s) 120, 158, 554, 724
GlaI GCGC 1 cut(s) 225
GluI GCNGC 4 cut(s) 120, 158, 554, 724
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 2 cut(s) 312, 512
HapII CCGG 3 cut(s) 313, 323, 340
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 2 cut(s) 334, 499
HindII GTYRAC 2 cut(s) 334, 499
HindIII AAGCTT 2 cut(s) 63, 254
HinfI GANTC 4 cut(s) 89, 481, 593, 698
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 3 cut(s) 313, 323, 340
HphI GGTGA 2 cut(s) 337, 415
Hpy166II GTNNAC 3 cut(s) 276, 334, 499
Hpy188I TCNGA 2 cut(s) 486, 598
Hpy188III TCNNGA 4 cut(s) 45, 59, 79, 348
Hpy8I GTNNAC 3 cut(s) 276, 334, 499
HpyAV CCTTC 2 cut(s) 292, 322
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4IV ACGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 232, 262
HpyF3I CTNAG 2 cut(s) 123, 653
HpySE526I ACGT 1 cut(s) 206
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 224
KasI GGCGCC 1 cut(s) 223
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 3 cut(s) 370, 526, 745
Lsp1109I GCAGC 2 cut(s) 169, 710
LweI GCATC 1 cut(s) 677
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 468
MalI GATC 3 cut(s) 372, 528, 747
MboI GATC 3 cut(s) 370, 526, 745
MflI RGATCY 1 cut(s) 370
MluCI AATT 2 cut(s) 145, 357
Mly113I GGCGCC 1 cut(s) 224
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 3 cut(s) 264, 513, 576
MseI TTAA 2 cut(s) 498, 504
MspA1I CMGCKG 1 cut(s) 723
MspI CCGG 3 cut(s) 313, 323, 340
MspR9I CCNGG 3 cut(s) 282, 314, 729
MvaI CCWGG 2 cut(s) 282, 729
MwoI GCNNNNNNNGC 3 cut(s) 157, 232, 262
NarI GGCGCC 1 cut(s) 224
NciI CCSGG 1 cut(s) 314
NdeII GATC 3 cut(s) 370, 526, 745
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 4 cut(s) 38, 225, 321, 372
NmuCI GTSAC 1 cut(s) 468
NspV TTCGAA 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 106
PfeI GAWTC 3 cut(s) 89, 481, 698
PinAI ACCGGT 1 cut(s) 322
PkrI GCNGC 4 cut(s) 121, 159, 555, 725
PleI GAGTC 1 cut(s) 601
PluTI GGCGCC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 601
PpuMI RGGWCCY 1 cut(s) 37
Psp1406I AACGTT 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 280, 727
PspGI CCWGG 2 cut(s) 280, 727
PspN4I GGNNCC 4 cut(s) 38, 225, 321, 372
PspPI GGNCC 2 cut(s) 37, 310
PspPPI RGGWCCY 1 cut(s) 37
PspXI VCTCGAGB 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 723
SaqAI TTAA 2 cut(s) 498, 504
SatI GCNGC 4 cut(s) 120, 158, 554, 724
Sau3AI GATC 3 cut(s) 370, 526, 745
Sau96I GGNCC 2 cut(s) 37, 310
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 282, 314, 729
SfaNI GCATC 1 cut(s) 677
SfoI GGCGCC 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 37
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 145, 357
SsiI CCGC 9 cut(s) 5, 119, 233, 317, 343, 478, 494, 518, 554
SspDI GGCGCC 1 cut(s) 223
StyD4I CCNGG 3 cut(s) 280, 312, 727
StyI CCWWGG 2 cut(s) 292, 513
TaaI ACNGT 1 cut(s) 474
TaiI ACGT 1 cut(s) 209
TaqI TCGA 6 cut(s) 46, 80, 92, 107, 347, 667
TasI AATT 2 cut(s) 145, 357
TauI GCSGC 2 cut(s) 122, 556
TfiI GAWTC 3 cut(s) 89, 481, 698
Tru1I TTAA 2 cut(s) 498, 504
Tru9I TTAA 2 cut(s) 498, 504
TscAI CASTG 2 cut(s) 147, 479
TseFI GTSAC 1 cut(s) 468
TseI GCWGC 2 cut(s) 157, 723
Tsp45I GTSAC 1 cut(s) 468
TspDTI ATGAA 4 cut(s) 662, 675, 711, 753
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 147, 479
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
XhoI CTCGAG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.