FvH4_6g22650

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013204
Physical Location & Seq
Reverse (-)
16302849 .. 16305683
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22650.t1

Sequence Viewer

Length: 762 bp
ATGGCGGAACCAGCCAACGGAGGAGAGGAAGACGATGACTACATGGGGGACCTCTCTCGGTTTCTCTCTCCAGAAACTTCCGGTCCTCTCCCGAAAAAGGTTTCGAATAGCAAAGCCTCGATTGTGCAACCCTCTAGGAAAAAACCTAAAGCACTGAATTGGCAAGAGCAGCGTAAGATTGATAGGGAGAGAAAGCAACAGGAAGAGGATGAGAAAACCCTGGCGAATATAGAGGCGCCGATTCCACAGTCCAACATAGGATTTAGGCTTTTGAAGCAAATGGGGTACACACCAGGTACTGCCCTGGGGAAGGAGGGGGCGGGCCGGGCCGAACCGGTGAAGGTTGATATTCGGCGGTCGAGAGCTGGAATTGGGAGGGAGGATCCGAGTAAGGAGAAGAGGAAGAGAGAGGAGTTGAGGAGTGTGGAGGAGAAGAGGAATGAGGAGAGCTTGATGGAGGAGTTTGGGACGAGGAAGAAGTCGCAGTGGCGGATTCGGAGAGTGGTGGTTAATTTTAATAAGGCCAAGGCGGTTTTGGAGCAGTTGGAGAATAAGGAGGTTGTGCCGTTGGAGAAGGAGGATGATGAGGAAGAGGAGGGCAGAGAGGAAGAGGAAGAGGAACTGATTACAGAAGAGGATTTACAAGATATATTGATGAAACTGAGAGATGAGCATCGATACTGCCTCTTCTGTGGATGCCAGTATGAATCAATGGAGGAACTATTATCCAGCTGCCCTGGAACTAATGAAGACGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4187 G-patch

Protein Analysis

254

Amino Acids

29.21

Weight (kDa)

4.95

Isoelectric Point (pI)

78.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch_2 PF12656 79 - 127 9.2e-07 G-patch domain
G-patch PF01585 84 - 126 4e-15 G-patch domain
DUF4187 PF13821 202 - 253 1.2e-19 Domain of unknown function (DUF4187)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013204)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G57910
fragaria_vesca FvH4_6g22250 FvH4_6g22650
malus_domestica MD14G1060400.v1.1
prunus_persica Prupe.7G074100_v2.0.a1 Prupe.7G074100_v2.0.a1
pyrus_communis pycom14g04890
rosa_chinensis RchiOBHm_Chr3g0480211
rosa_laevigata RLG00000023510
rosa_multiflora Rmu_sc0006148.1_g000003 Rmu_sc0032341.1_g000002
rosa_roxburghii Rroxscaffold_6G00401700
rosa_rugosa Rorug03G0181100
rosa_samantha Rh3AG232900 Rh3BG265500 Rh3CG262700 Rh3DG258700
rosa_wichuraiana Rw3G020920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AciI CCGC 5 cut(s) 5, 320, 355, 490, 530
AclWI GGATC 2 cut(s) 377, 390
AcyI GRCGYC 1 cut(s) 236
AfaI GTAC 2 cut(s) 287, 298
AfiI CCNNNNNNNGG 3 cut(s) 17, 97, 310
AgeI ACCGGT 1 cut(s) 334
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 4 cut(s) 219, 292, 303, 736
AluBI AGCT 3 cut(s) 365, 450, 732
AluI AGCT 3 cut(s) 365, 450, 732
AlwI GGATC 2 cut(s) 377, 390
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 3 cut(s) 322, 327, 522
ApeKI GCWGC 2 cut(s) 169, 732
AsiGI ACCGGT 1 cut(s) 334
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 4 cut(s) 49, 83, 322, 327
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 349
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 2 cut(s) 49, 83
BamHI GGATCC 1 cut(s) 382
BanI GGYRCC 1 cut(s) 235
BarI GAAGNNNNNNTAC 2 cut(s) 624, 656
BbsI GAAGAC 2 cut(s) 36, 756
BbvI GCAGC 2 cut(s) 181, 719
BccI CCATC 1 cut(s) 448
BceAI ACGGC 1 cut(s) 550
BciT130I CCWGG 4 cut(s) 221, 294, 305, 738
BcnI CCSGG 1 cut(s) 326
BfaI CTAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 239
BisI GCNGC 2 cut(s) 170, 733
BlsI GCNGC 2 cut(s) 171, 734
Bme1390I CCNGG 5 cut(s) 221, 294, 305, 326, 738
Bme18I GGWCC 2 cut(s) 49, 83
BmgT120I GGNCC 4 cut(s) 49, 83, 322, 327
BmiI GGNNCC 4 cut(s) 9, 50, 237, 384
BmrFI CCNGG 5 cut(s) 221, 294, 305, 326, 738
BmsI GCATC 2 cut(s) 682, 686
BpiI GAAGAC 2 cut(s) 36, 756
BpmI CTGGAG 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 676
BsaBI GATNNNNATC 1 cut(s) 672
BsaHI GRCGYC 1 cut(s) 236
BsaJI CCNNGG 5 cut(s) 219, 303, 304, 525, 736
BsaWI WCCGGW 2 cut(s) 80, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 97, 310
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 4 cut(s) 221, 294, 305, 738
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 5 cut(s) 219, 303, 304, 525, 736
BseGI GGATG 3 cut(s) 214, 586, 701
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 3 cut(s) 17, 97, 310
BseMII CTCAG 1 cut(s) 653
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 7 cut(s) 36, 425, 433, 443, 458, 473, 608
BseXI GCAGC 2 cut(s) 181, 719
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 3 cut(s) 324, 329, 524
BshNI GGYRCC 1 cut(s) 235
BshTI ACCGGT 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 676
BsiEI CGRYCG 1 cut(s) 359
BsiSI CCGG 3 cut(s) 81, 325, 335
BslFI GGGAC 2 cut(s) 62, 481
BslI CCNNNNNNNGG 3 cut(s) 17, 97, 310
BsmFI GGGAC 2 cut(s) 62, 481
BsnI GGCC 3 cut(s) 324, 329, 524
Bsp119I TTCGAA 1 cut(s) 104
Bsp143I GATC 2 cut(s) 382, 754
BspACI CCGC 5 cut(s) 5, 320, 355, 490, 530
BspANI GGCC 3 cut(s) 324, 329, 524
BspCNI CTCAG 1 cut(s) 654
BspDI ATCGAT 1 cut(s) 676
BspLI GGNNCC 4 cut(s) 9, 50, 237, 384
BspPI GGATC 2 cut(s) 377, 390
BspT104I TTCGAA 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 700
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 5 cut(s) 219, 303, 304, 525, 736
BssMI GATC 2 cut(s) 382, 754
BssNI GRCGYC 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 4 cut(s) 221, 294, 305, 738
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 9 cut(s) 198, 392, 398, 428, 585, 603, 609, 627, 692
BstACI GRCGYC 1 cut(s) 236
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 662
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 3 cut(s) 214, 586, 701
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 2 cut(s) 385, 757
BstMBI GATC 2 cut(s) 382, 754
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 4 cut(s) 11, 169, 274, 326
BstNI CCWGG 4 cut(s) 221, 294, 305, 738
BstSCI CCNGG 5 cut(s) 219, 292, 303, 324, 736
BstV1I GCAGC 2 cut(s) 181, 719
BstV2I GAAGAC 2 cut(s) 36, 756
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
Bsu15I ATCGAT 1 cut(s) 676
BsuRI GGCC 3 cut(s) 324, 329, 524
BsuTUI ATCGAT 1 cut(s) 676
BtsCI GGATG 3 cut(s) 214, 586, 701
BtsI GCAGTG 1 cut(s) 491
BtsIMutI CAGTG 3 cut(s) 152, 491, 757
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 4 cut(s) 49, 83, 322, 327
ClaI ATCGAT 1 cut(s) 676
CsiI ACCWGGT 1 cut(s) 292
Csp6I GTAC 2 cut(s) 286, 297
CspAI ACCGGT 1 cut(s) 334
CviAII CATG 1 cut(s) 43
CviJI RGCY 9 cut(s) 14, 116, 268, 324, 329, 365, 450, 524, 732
CviKI_1 RGCY 9 cut(s) 14, 116, 268, 324, 329, 365, 450, 524, 732
CviQI GTAC 2 cut(s) 286, 297
DdeI CTNAG 1 cut(s) 662
DinI GGCGCC 1 cut(s) 237
DpnI GATC 2 cut(s) 384, 756
DpnII GATC 2 cut(s) 382, 754
Eam1104I CTCTTC 9 cut(s) 198, 392, 398, 428, 585, 603, 609, 627, 692
EarI CTCTTC 9 cut(s) 198, 392, 398, 428, 585, 603, 609, 627, 692
EciI GGCGGA 2 cut(s) 20, 505
Eco130I CCWWGG 1 cut(s) 525
Eco47I GGWCC 2 cut(s) 49, 83
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 4 cut(s) 219, 292, 303, 736
EcoT14I CCWWGG 1 cut(s) 525
EgeI GGCGCC 1 cut(s) 237
EheI GGCGCC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 44, 230, 257, 650, 705
FaqI GGGAC 2 cut(s) 62, 481
FatI CATG 1 cut(s) 42
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 170, 733
FokI GGATG 3 cut(s) 221, 593, 708
Fsp4HI GCNGC 2 cut(s) 170, 733
FspBI CTAG 1 cut(s) 135
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 170, 733
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 3 cut(s) 324, 329, 524
HapII CCGG 3 cut(s) 81, 325, 335
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 236
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 3 cut(s) 241, 493, 707
HpaII CCGG 3 cut(s) 81, 325, 335
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 387, 498
Hpy188III TCNNGA 3 cut(s) 71, 91, 360
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 304, 334, 568
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 169, 274, 326
HpyF3I CTNAG 1 cut(s) 662
Hsp92I GRCGYC 1 cut(s) 236
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 236
KasI GGCGCC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 382, 754
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 2 cut(s) 181, 719
LweI GCATC 2 cut(s) 682, 686
MabI ACCWGGT 1 cut(s) 292
MaeI CTAG 1 cut(s) 135
MalI GATC 2 cut(s) 384, 756
MboI GATC 2 cut(s) 382, 754
MflI RGATCY 1 cut(s) 382
MluCI AATT 3 cut(s) 157, 369, 511
Mly113I GGCGCC 1 cut(s) 236
MmeI TCCRAC 3 cut(s) 276, 525, 549
MseI TTAA 2 cut(s) 510, 516
MspA1I CMGCKG 1 cut(s) 732
MspI CCGG 3 cut(s) 81, 325, 335
MspR9I CCNGG 5 cut(s) 221, 294, 305, 326, 738
MvaI CCWGG 4 cut(s) 221, 294, 305, 738
MwoI GCNNNNNNNGC 4 cut(s) 11, 169, 274, 326
NarI GGCGCC 1 cut(s) 236
NciI CCSGG 1 cut(s) 326
NdeII GATC 2 cut(s) 382, 754
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 4 cut(s) 9, 50, 237, 384
NspV TTCGAA 1 cut(s) 104
PasI CCCWGGG 1 cut(s) 304
PfeI GAWTC 3 cut(s) 241, 493, 707
PinAI ACCGGT 1 cut(s) 334
PkrI GCNGC 2 cut(s) 171, 734
PluTI GGCGCC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 4 cut(s) 219, 292, 303, 736
PspGI CCWGG 4 cut(s) 219, 292, 303, 736
PspN4I GGNNCC 4 cut(s) 9, 50, 237, 384
PspPI GGNCC 4 cut(s) 49, 83, 322, 327
PspPPI RGGWCCY 1 cut(s) 49
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 732
RsaI GTAC 2 cut(s) 287, 298
RsaNI GTAC 2 cut(s) 286, 297
SaqAI TTAA 2 cut(s) 510, 516
SatI GCNGC 2 cut(s) 170, 733
Sau3AI GATC 2 cut(s) 382, 754
Sau96I GGNCC 4 cut(s) 49, 83, 322, 327
ScrFI CCNGG 5 cut(s) 221, 294, 305, 326, 738
SetI ASST 9 cut(s) 54, 102, 148, 298, 345, 367, 452, 561, 734
SexAI ACCWGGT 1 cut(s) 292
SfaNI GCATC 2 cut(s) 682, 686
SfoI GGCGCC 1 cut(s) 237
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 2 cut(s) 49, 83
Sse9I AATT 3 cut(s) 157, 369, 511
SsiI CCGC 5 cut(s) 5, 320, 355, 490, 530
SspDI GGCGCC 1 cut(s) 235
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 5 cut(s) 219, 292, 303, 324, 736
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 4 cut(s) 104, 119, 359, 676
TasI AATT 3 cut(s) 157, 369, 511
TfiI GAWTC 3 cut(s) 241, 493, 707
Tru1I TTAA 2 cut(s) 510, 516
Tru9I TTAA 2 cut(s) 510, 516
TscAI CASTG 2 cut(s) 159, 491
TseI GCWGC 2 cut(s) 169, 732
TspDTI ATGAA 3 cut(s) 671, 720, 762
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 2 cut(s) 159, 491
VpaK11BI GGWCC 2 cut(s) 49, 83
XagI CCTNNNNNAGG 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.