AT3G58100

plasmodesmata callose-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011944
Physical Location & Seq
Reverse (-)
21515170 .. 21517739
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58100.2

Sequence Viewer

Length: 543 bp
ATGATAATGTCTCTCCCTCAGTGTTCTCATCTGCGTCTCTCTATTCTCGCTGCGACGGCGGCGATGTTAATGGTGATTACGACTGCGCAGATCGGCGGTCAAGTGATACAGGTGGAGTTATGGTGTGTGGCGAAGAACAACGCGGAAGATTCGTCGCTACAGACGGCGATTGAGTGGGCTTGTGGTCAAGGCGGAGCCGATTGTGGTCCGATTCAGCAAGGTGGACCTTGTAACGACCCGACGGATGTTCAGAAAATGGCGTCGTTTGTTTTCAACAATTATTATCTGAAGAACGGCGAGGAGGACGAAGCTTGCAATTTCAACAATAACGCTGCTCTTACTTCACTCAATCCAAGTCAGGGAACTTGCAAATATCCTTCGAGTAAGGGAGCCAACAATGGTCGATTAGCGGATGACACTTCAATGGGTGCAGGACAAGCAGATATGAGCCGTGGTGGCAGACCGATTTCCAGCAGTTGGATGGTGACCTTCATCGGTTTCGGTAGCTTATTGACGATGACATGGATAATTCATCATCTTTAG

Protein Analysis

180

Amino Acids

19.17

Weight (kDa)

4.97

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 116 - 187 1.4e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G58100 AT3G58100
fragaria_vesca FvH4_6g27020 FvH4_6g27020 FvH4_6g27020
malus_domestica MD09G1240800.v1.1 MD17G1233700.v1.1
prunus_persica Prupe.3G125100_v2.0.a1
pyrus_communis pycom09g15960 pycom17g23680
rosa_chinensis RchiOBHm_Chr2g0128881
rosa_laevigata RLG00000019037
rosa_multiflora Rmu_sc0001643.1_g000031
rosa_roxburghii Rroxscaffold_2G00115140
rosa_rugosa Rorug02G0282100
rosa_samantha Rh2AG334500 Rh2CG321500 Rh2DG359200
rosa_wichuraiana Rw2G027070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 87
AccB7I CCANNNNNTGG 1 cut(s) 477
AccII CGCG 1 cut(s) 143
AciI CCGC 5 cut(s) 59, 96, 143, 192, 410
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 359, 477
AgsI TTSAA 3 cut(s) 274, 322, 423
AluBI AGCT 2 cut(s) 311, 507
AluI AGCT 2 cut(s) 311, 507
Alw26I GTCTC 2 cut(s) 15, 41
ApeKI GCWGC 2 cut(s) 50, 332
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 206, 224
AsuHPI GGTGA 2 cut(s) 85, 496
AvaII GGWCC 2 cut(s) 206, 224
BbvI GCAGC 2 cut(s) 37, 319
BccI CCATC 1 cut(s) 475
BceAI ACGGC 4 cut(s) 72, 180, 310, 435
BcoDI GTCTC 2 cut(s) 15, 41
BfmI CTRYAG 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 456
BisI GCNGC 3 cut(s) 51, 60, 333
BlsI GCNGC 3 cut(s) 52, 61, 334
Bme18I GGWCC 2 cut(s) 206, 224
BmgT120I GGNCC 2 cut(s) 206, 224
BmiI GGNNCC 2 cut(s) 196, 391
BsaHI GRCGYC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 451
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 477
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 3 cut(s) 250, 418, 486
BseLI CCNNNNNNNGG 2 cut(s) 359, 477
BseMII CTCAG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 37, 319
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 359, 477
BsmAI GTCTC 2 cut(s) 15, 41
BsmBI CGTCTC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 5 cut(s) 59, 96, 143, 192, 410
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 196, 391
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 451
BstEII GGTNACC 1 cut(s) 484
BstF5I GGATG 3 cut(s) 250, 418, 486
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 2 cut(s) 15, 41
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 56, 59, 437, 456
BstPI GGTNACC 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 158
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 37, 319
BtgI CCRYGG 1 cut(s) 451
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 3 cut(s) 250, 418, 486
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 206, 224
CseI GACGC 2 cut(s) 23, 249
CviAII CATG 1 cut(s) 522
CviJI RGCY 6 cut(s) 179, 197, 311, 392, 450, 507
CviKI_1 RGCY 6 cut(s) 179, 197, 311, 392, 450, 507
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 207
Eco47I GGWCC 2 cut(s) 206, 224
Eco57I CTGAAG 1 cut(s) 308
Eco91I GGTNACC 1 cut(s) 484
EcoO65I GGTNACC 1 cut(s) 484
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 1 cut(s) 525
FaiI YATR 3 cut(s) 121, 446, 523
FatI CATG 1 cut(s) 521
Fnu4HI GCNGC 3 cut(s) 51, 60, 333
FokI GGATG 3 cut(s) 257, 425, 493
Fsp4HI GCNGC 3 cut(s) 51, 60, 333
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 51, 60, 333
HgaI GACGC 2 cut(s) 23, 249
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 1 cut(s) 525
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 2 cut(s) 149, 211
HphI GGTGA 2 cut(s) 85, 496
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 3 cut(s) 210, 252, 288
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 4 cut(s) 58, 157, 244, 265
HpyAV CCTTC 2 cut(s) 387, 499
HpyCH4V TGCA 3 cut(s) 315, 369, 431
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 59, 437, 456
HpyF3I CTNAG 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 1 cut(s) 525
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 194, 389
LpnPI CCDG 4 cut(s) 95, 344, 417, 484
Lsp1109I GCAGC 2 cut(s) 37, 319
MaeIII GTNAC 2 cut(s) 230, 484
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 3 cut(s) 145, 158, 301
MluCI AATT 3 cut(s) 277, 316, 528
MmeI TCCRAC 1 cut(s) 458
MnlI CCTC 3 cut(s) 27, 292, 295
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 422
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 56, 59, 437, 456
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 525
NlaIV GGNNCC 2 cut(s) 196, 391
NmuCI GTSAC 1 cut(s) 484
NsbI TGCGCA 1 cut(s) 87
PfeI GAWTC 2 cut(s) 149, 211
PflMI CCANNNNNTGG 1 cut(s) 477
PkrI GCNGC 3 cut(s) 52, 61, 334
PspEI GGTNACC 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 196, 391
PspPI GGNCC 2 cut(s) 206, 224
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 3 cut(s) 51, 60, 333
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 206, 224
SetI ASST 6 cut(s) 114, 223, 229, 313, 491, 509
SfcI CTRYAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 206, 224
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 3 cut(s) 277, 316, 528
SsiI CCGC 5 cut(s) 59, 96, 143, 192, 410
TaqI TCGA 2 cut(s) 380, 403
TaqII GACCGA 1 cut(s) 478
TasI AATT 3 cut(s) 277, 316, 528
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 149, 211
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 2 cut(s) 50, 332
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 2 cut(s) 481, 521
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 477
VpaK11BI GGWCC 2 cut(s) 206, 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.