Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011944

Physical Location & Seq

Genomic Coordinates Forward (+)

41299682 .. 41300530

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG321500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTACACAAGCTTCCTTCTTCTTCTCTCTTTCCTCCTCTCACTCGCCGCCCTCTCCAACGCCCAAAACAGCGTCGTCACGATGGAGCTGTGGTGCGTGGCCAAGAACAACGCCGACGACTCTGCCCTCCAGTCCGCTCTCGACTGGGCCTGCGGGGCCGGCGGCGCCAACTGCAGCCCTATGCAGCAAGGTGGGCCCTGCTACGACCCATCTGACATCCAGAACACCGCGTCGTACGCCTTCAACGACTACTTTCTCAAACACGGCATGACCGATGACAGCTGCAACTTCGATAACACTGCCGCAGTCACCTCTTTGAATCCCAGTTTTGGTAATTGCAAGTTCCCATCCAGCTTGTCAGGGAGCAATAGAAGTTCGAGTTCATCGACGGCATCATATGGGTTGGGGCCTAGTGAAGATCTGAATGGCAGCAATAAAATTTCGCAGCAACTGGTTTTGCTGCCCTTGATTACCAGTCTTTTGCTCATTGCCTCCTATAATACATGGGTCATCTGTTTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

174

Amino Acids

18.41

Weight (kDa)

4.14

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	30 - 101	4.9e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58100 AT3G58100
fragaria_vesca	FvH4_6g27020 FvH4_6g27020 FvH4_6g27020
malus_domestica	MD09G1240800.v1.1 MD17G1233700.v1.1
prunus_persica	Prupe.3G125100_v2.0.a1
pyrus_communis	pycom09g15960 pycom17g23680
rosa_chinensis	RchiOBHm_Chr2g0128881
rosa_laevigata	RLG00000019037
rosa_multiflora	Rmu_sc0001643.1_g000031
rosa_roxburghii	Rroxscaffold_2G00115140
rosa_rugosa	Rorug02G0282100
rosa_samantha	Rh2AG334500 Rh2CG321500 Rh2DG359200
rosa_wichuraiana	Rw2G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	230
AciI	CCGC	6 cut(s)	48, 135, 153, 162, 228, 303
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	5, 236
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	244, 319
AluBI	AGCT	4 cut(s)	12, 88, 282, 354
AluI	AGCT	4 cut(s)	12, 88, 282, 354
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	5 cut(s)	99, 147, 156, 194, 407
ApaI	GGGCCC	1 cut(s)	198
ApeKI	GCWGC	6 cut(s)	174, 184, 282, 429, 445, 460
ApoI	RAATTY	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	5 cut(s)	147, 156, 194, 195, 407
AsuHPI	GGTGA	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	198
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbvI	GCAGC	6 cut(s)	186, 196, 269, 441, 447, 457
BccI	CCATC	3 cut(s)	76, 217, 355
BceAI	ACGGC	2 cut(s)	280, 405
BcgI	CGANNNNNNTGC	4 cut(s)	104, 138, 281, 315
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	9 cut(s)	48, 163, 175, 185, 283, 303, 430, 446, 461
BlsI	GCNGC	9 cut(s)	49, 164, 176, 186, 284, 304, 431, 447, 462
BmgT120I	GGNCC	5 cut(s)	147, 156, 194, 195, 407
BmiI	GGNNCC	4 cut(s)	157, 166, 196, 408
BmrI	ACTGGG	2 cut(s)	154, 318
BmsI	GCATC	1 cut(s)	401
BmuI	ACTGGG	2 cut(s)	154, 318
BpmI	CTGGAG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	5 cut(s)	130, 149, 324, 456, 474
Bse3DI	GCAATG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	216, 347
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	486
BseNI	ACTGG	5 cut(s)	130, 149, 324, 456, 474
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	6 cut(s)	186, 196, 269, 441, 447, 457
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	5 cut(s)	101, 149, 158, 196, 409
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	159
BsiWI	CGTACG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	329
BsnI	GGCC	5 cut(s)	101, 149, 158, 196, 409
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	418
BspACI	CCGC	6 cut(s)	48, 135, 153, 162, 228, 303
BspANI	GGCC	5 cut(s)	101, 149, 158, 196, 409
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	4 cut(s)	157, 166, 196, 408
BspMAI	CTGCAG	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	5 cut(s)	130, 149, 324, 456, 474
BssAI	RCCGGY	1 cut(s)	158
BssMI	GATC	1 cut(s)	418
BssNI	GRCGYC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	151, 160
BstF5I	GGATG	2 cut(s)	216, 347
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 159, 164, 171, 193, 236
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	198
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	6 cut(s)	186, 196, 269, 441, 447, 457
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	5 cut(s)	101, 149, 158, 196, 409
BtsCI	GGATG	2 cut(s)	216, 347
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	151, 160
CaiI	CAGNNNCTG	1 cut(s)	451
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	5 cut(s)	147, 156, 194, 195, 407
CseI	GACGC	2 cut(s)	61, 219
Csp6I	GTAC	2 cut(s)	4, 235
CviAII	CATG	2 cut(s)	268, 504
CviQI	GTAC	2 cut(s)	4, 235
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	198
EcoO109I	RGGNCCY	2 cut(s)	195, 407
EcoT38I	GRGCYC	1 cut(s)	198
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaeI	CATG	2 cut(s)	271, 507
FaiI	YATR	6 cut(s)	182, 269, 397, 399, 498, 505
FatI	CATG	2 cut(s)	267, 503
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	9 cut(s)	48, 163, 175, 185, 283, 303, 430, 446, 461
FokI	GGATG	2 cut(s)	203, 334
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	9 cut(s)	48, 163, 175, 185, 283, 303, 430, 446, 461
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	9 cut(s)	48, 163, 175, 185, 283, 303, 430, 446, 461
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	5 cut(s)	101, 149, 158, 196, 409
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	61, 219
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	271, 507
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	2 cut(s)	119, 319
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	214, 423
Hpy188III	TCNNGA	4 cut(s)	79, 140, 220, 522
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	4 cut(s)	77, 119, 235, 391
HpyAV	CCTTC	2 cut(s)	26, 250
HpyCH4V	TGCA	4 cut(s)	174, 184, 285, 339
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 159, 164, 171, 193, 236
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	271, 507
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	2 cut(s)	85, 363
Lsp1109I	GCAGC	6 cut(s)	186, 196, 269, 441, 447, 457
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	76, 307
MalI	GATC	1 cut(s)	420
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	1 cut(s)	418
MboII	GAAGA	3 cut(s)	11, 14, 428
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	2 cut(s)	334, 438
MluNI	TGGCCA	1 cut(s)	101
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	44, 47, 62, 137, 322, 502
Mox20I	TGGCCA	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	101
Msp20I	TGGCCA	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	6 cut(s)	155, 159, 164, 171, 193, 236
NaeI	GCCGGC	1 cut(s)	160
NarI	GGCGCC	1 cut(s)	165
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	418
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	271, 507
NlaIV	GGNNCC	4 cut(s)	157, 166, 196, 408
NmuCI	GTSAC	2 cut(s)	76, 307
PcsI	WCGNNNNNNNCGW	3 cut(s)	243, 270, 383
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	319
Pfl23II	CGTACG	1 cut(s)	234
PkrI	GCNGC	9 cut(s)	49, 164, 176, 186, 284, 304, 431, 447, 462
PleI	GAGTC	1 cut(s)	113
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	113
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	157, 166, 196, 408
PspOMI	GGGCCC	1 cut(s)	194
PspPI	GGNCC	5 cut(s)	147, 156, 194, 195, 407
PstI	CTGCAG	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	5, 236
RsaNI	GTAC	2 cut(s)	4, 235
SatI	GCNGC	9 cut(s)	48, 163, 175, 185, 283, 303, 430, 446, 461
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	5 cut(s)	147, 156, 194, 195, 407
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	6 cut(s)	14, 90, 193, 284, 314, 356
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	1 cut(s)	172
SfiI	GGCCNNNNNGGCC	1 cut(s)	155
SfoI	GGCGCC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	334, 438
SsiI	CCGC	6 cut(s)	48, 135, 153, 162, 228, 303
SspDI	GGCGCC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	411
TaqI	TCGA	4 cut(s)	141, 291, 377, 386
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	2 cut(s)	334, 438
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	3 cut(s)	50, 165, 305
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	76, 307
TseI	GCWGC	6 cut(s)	174, 184, 282, 429, 445, 460
Tsp45I	GTSAC	2 cut(s)	76, 307
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	438
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.