Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011944

Physical Location & Seq

Genomic Coordinates Forward (+)

50569591 .. 50571737

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTACACAAGCTTCCTTCTTCTTCTCTCTTTCCTCCTCTCACTCGCCGCCCTCTCCAACGCCCAAAACAGCGTCGTCACAATGGAGCTGTGGTGCGTGGCCAAGAACAACGCCGACGACTCTGCCCTCCAGTCCGCTCTCGACTGGGCCTGCGGGGCCGGCGGCGCCAACTGCAGCCCTATGCAGCAAGGTGGGCCCTGCTACGACCCATCTGACATCCAGAACACCGCGTCGTACGCCTTCAACGACTACTTTCTCAAACACGGCATGACCGATGACAGCTGCAACTTCGATAACACTGCCGCAGTCACCTCTTTGAATCCCAGTACGTGCTGGACTTCCATCTTCTTCTTTCCTCTTTGGGTTTCTCTGTTTCGTTTGGACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

129

Amino Acids

14.13

Weight (kDa)

4.05

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	30 - 101	2.3e-20	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58100 AT3G58100
fragaria_vesca	FvH4_6g27020 FvH4_6g27020 FvH4_6g27020
malus_domestica	MD09G1240800.v1.1 MD17G1233700.v1.1
prunus_persica	Prupe.3G125100_v2.0.a1
pyrus_communis	pycom09g15960 pycom17g23680
rosa_chinensis	RchiOBHm_Chr2g0128881
rosa_laevigata	RLG00000019037
rosa_multiflora	Rmu_sc0001643.1_g000031
rosa_roxburghii	Rroxscaffold_2G00115140
rosa_rugosa	Rorug02G0282100
rosa_samantha	Rh2AG334500 Rh2CG321500 Rh2DG359200
rosa_wichuraiana	Rw2G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	230
AciI	CCGC	6 cut(s)	48, 135, 153, 162, 228, 303
AcoI	YGGCCR	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	3 cut(s)	5, 236, 328
AgsI	TTSAA	2 cut(s)	244, 319
AluBI	AGCT	3 cut(s)	12, 88, 282
AluI	AGCT	3 cut(s)	12, 88, 282
AoxI	GGCC	4 cut(s)	99, 147, 156, 194
ApaI	GGGCCC	1 cut(s)	198
ApeKI	GCWGC	3 cut(s)	174, 184, 282
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	4 cut(s)	147, 156, 194, 195
AsuHPI	GGTGA	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	198
BalI	TGGCCA	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	198
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbvI	GCAGC	3 cut(s)	186, 196, 269
BccI	CCATC	2 cut(s)	217, 350
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	4 cut(s)	104, 138, 281, 315
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	6 cut(s)	48, 163, 175, 185, 283, 303
BlsI	GCNGC	6 cut(s)	49, 164, 176, 186, 284, 304
BmgT120I	GGNCC	4 cut(s)	147, 156, 194, 195
BmiI	GGNNCC	3 cut(s)	157, 166, 196
BmrI	ACTGGG	2 cut(s)	154, 318
BmuI	ACTGGG	2 cut(s)	154, 318
BpmI	CTGGAG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	3 cut(s)	130, 149, 324
BseGI	GGATG	1 cut(s)	216
BseNI	ACTGG	3 cut(s)	130, 149, 324
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	186, 196, 269
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	4 cut(s)	101, 149, 158, 196
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	159
BsiWI	CGTACG	1 cut(s)	234
BsnI	GGCC	4 cut(s)	101, 149, 158, 196
Bsp120I	GGGCCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	6 cut(s)	48, 135, 153, 162, 228, 303
BspANI	GGCC	4 cut(s)	101, 149, 158, 196
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	3 cut(s)	157, 166, 196
BspMAI	CTGCAG	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	130, 149, 324
BssAI	RCCGGY	1 cut(s)	158
BssNI	GRCGYC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	151, 160
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 159, 164, 171, 193, 236
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	198
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	186, 196, 269
BsuRI	GGCC	4 cut(s)	101, 149, 158, 196
BtsCI	GGATG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	151, 160
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	147, 156, 194, 195
CseI	GACGC	2 cut(s)	61, 219
Csp6I	GTAC	3 cut(s)	4, 235, 327
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	8 cut(s)	12, 88, 101, 149, 158, 177, 196, 282
CviKI_1	RGCY	8 cut(s)	12, 88, 101, 149, 158, 177, 196, 282
CviQI	GTAC	3 cut(s)	4, 235, 327
DinI	GGCGCC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	198
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaeI	CATG	1 cut(s)	271
FaiI	YATR	2 cut(s)	182, 269
FatI	CATG	1 cut(s)	267
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	6 cut(s)	48, 163, 175, 185, 283, 303
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	6 cut(s)	48, 163, 175, 185, 283, 303
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	6 cut(s)	48, 163, 175, 185, 283, 303
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	101, 149, 158, 196
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	61, 219
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	2 cut(s)	119, 319
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	140, 220
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	3 cut(s)	77, 119, 235
HpyAV	CCTTC	2 cut(s)	26, 250
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	174, 184, 285
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 159, 164, 171, 193, 236
HpySE526I	ACGT	1 cut(s)	329
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	8 cut(s)	130, 143, 163, 172, 211, 233, 319, 337
Lsp1109I	GCAGC	3 cut(s)	186, 196, 269
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	76, 307
MbiI	CCGCTC	1 cut(s)	137
MboII	GAAGA	4 cut(s)	11, 14, 337, 340
MhlI	GDGCHC	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	101
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	44, 47, 62, 137, 322, 366
Mox20I	TGGCCA	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	101
Msp20I	TGGCCA	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	6 cut(s)	155, 159, 164, 171, 193, 236
NaeI	GCCGGC	1 cut(s)	160
NarI	GGCGCC	1 cut(s)	165
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	157, 166, 196
NmuCI	GTSAC	2 cut(s)	76, 307
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 270
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	319
Pfl23II	CGTACG	1 cut(s)	234
PkrI	GCNGC	6 cut(s)	49, 164, 176, 186, 284, 304
PleI	GAGTC	1 cut(s)	113
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	330
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	157, 166, 196
PspOMI	GGGCCC	1 cut(s)	194
PspPI	GGNCC	4 cut(s)	147, 156, 194, 195
PstI	CTGCAG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	3 cut(s)	5, 236, 328
RsaNI	GTAC	3 cut(s)	4, 235, 327
SatI	GCNGC	6 cut(s)	48, 163, 175, 185, 283, 303
Sau96I	GGNCC	4 cut(s)	147, 156, 194, 195
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	6 cut(s)	14, 90, 193, 284, 314, 332
SfcI	CTRYAG	1 cut(s)	172
SfiI	GGCCNNNNNGGCC	1 cut(s)	155
SfoI	GGCGCC	1 cut(s)	166
SsiI	CCGC	6 cut(s)	48, 135, 153, 162, 228, 303
SspDI	GGCGCC	1 cut(s)	164
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	141, 291
TaqII	GACCGA	1 cut(s)	287
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	3 cut(s)	50, 165, 305
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	76, 307
TseI	GCWGC	3 cut(s)	174, 184, 282
Tsp45I	GTSAC	2 cut(s)	76, 307
TspRI	CASTG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.