Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011944

Physical Location & Seq

Genomic Coordinates Reverse (-)

28235299 .. 28236741

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1233700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCACAAAAACATCGCTTTCTCTATCATCCTCTCACTCGCCCTCTTCTGCCTTTTGATCCTGCCTTCCACGGCCAAGGACGGCGTGGTTACGACCGAGCTGTGGTGCGTGGCCAAGAACAACGCGGAGGACGCCCCCCTGCTGACGGCGCTGAACTGGGTGTGCGGGCCTGGTGGGGCCGACTGCAGCCCAATCCAGCAAGGTGGGCCCTGCTACGACCCCGCCGACATCCAGAACACTGCCTCCTACGCTTTCAACGACTACTTTCTGAAACACGGCATGACCGACGATAGTTGCAACTTTGATAACACTGCCGCACTCACTTCTCTGAATCCCAGTCATGATAAGTGCAAATTCCCATCCAGCTTATCAGCGAGCAATGCAAGCATCTCCAGTCCATCAACAGCATATGGAAATGGAATGGGACCTAGTGAAAATTTGAACGGCAGCAATAAGATTTCTGAGCAATGGATTTGGCCCCTCGTTACCAGTTTTCTGGTCATTGCATATAATACATGGGCAATGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

177

Amino Acids

18.78

Weight (kDa)

4.57

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	34 - 105	1.5e-19	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58100 AT3G58100
fragaria_vesca	FvH4_6g27020 FvH4_6g27020 FvH4_6g27020
malus_domestica	MD09G1240800.v1.1 MD17G1233700.v1.1
prunus_persica	Prupe.3G125100_v2.0.a1
pyrus_communis	pycom09g15960 pycom17g23680
rosa_chinensis	RchiOBHm_Chr2g0128881
rosa_laevigata	RLG00000019037
rosa_multiflora	Rmu_sc0001643.1_g000031
rosa_roxburghii	Rroxscaffold_2G00115140
rosa_rugosa	Rorug02G0282100
rosa_samantha	Rh2AG334500 Rh2CG321500 Rh2DG359200
rosa_wichuraiana	Rw2G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	125
AciI	CCGC	4 cut(s)	125, 165, 222, 315
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	2 cut(s)	72, 111
AcsI	RAATTY	2 cut(s)	353, 436
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	102, 145
AgsI	TTSAA	2 cut(s)	256, 442
AjnI	CCWGG	1 cut(s)	169
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	100, 366
AluI	AGCT	2 cut(s)	100, 366
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	6 cut(s)	72, 111, 167, 177, 206, 476
ApaI	GGGCCC	1 cut(s)	210
ApeKI	GCWGC	2 cut(s)	186, 447
ApoI	RAATTY	2 cut(s)	353, 436
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	6 cut(s)	167, 177, 206, 207, 425, 477
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	198, 459
BccI	CCATC	2 cut(s)	367, 406
BceAI	ACGGC	5 cut(s)	87, 97, 162, 292, 460
BciT130I	CCWGG	1 cut(s)	171
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	184
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	3 cut(s)	187, 315, 448
BlsI	GCNGC	3 cut(s)	188, 316, 449
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	6 cut(s)	167, 177, 206, 207, 425, 477
BmiI	GGNNCC	4 cut(s)	178, 208, 426, 479
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	2 cut(s)	166, 330
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	2 cut(s)	166, 330
BpmI	CTGGAG	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	69, 75
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 145
Bse1I	ACTGG	4 cut(s)	161, 336, 393, 489
Bse3DI	GCAATG	4 cut(s)	385, 473, 501, 528
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	69, 75
BseGI	GGATG	3 cut(s)	27, 228, 359
BseLI	CCNNNNNNNGG	2 cut(s)	102, 145
BseMI	GCAATG	4 cut(s)	385, 473, 501, 528
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	4 cut(s)	161, 336, 393, 489
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	198, 459
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	6 cut(s)	74, 113, 169, 179, 208, 478
BsiEI	CGRYCG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	102, 145
BsmFI	GGGAC	1 cut(s)	438
BsnI	GGCC	6 cut(s)	74, 113, 169, 179, 208, 478
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	4 cut(s)	125, 165, 222, 315
BspANI	GGCC	6 cut(s)	74, 113, 169, 179, 208, 478
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	4 cut(s)	178, 208, 426, 479
BspMAI	CTGCAG	1 cut(s)	188
BspPI	GGATC	1 cut(s)	52
BsrDI	GCAATG	4 cut(s)	385, 473, 501, 528
BsrI	ACTGG	4 cut(s)	161, 336, 393, 489
BssECI	CCNNGG	2 cut(s)	69, 75
BssMI	GATC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	167, 376, 385
BstDEI	CTNAG	1 cut(s)	462
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	27, 228, 359
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 148, 205, 248, 380, 384
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	198, 459
BstXI	CCANNNNNNTGG	2 cut(s)	203, 496
BsuRI	GGCC	6 cut(s)	74, 113, 169, 179, 208, 478
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	27, 228, 359
BtsI	GCAGTG	2 cut(s)	237, 309
BtsIMutI	CAGTG	2 cut(s)	237, 309
Cac8I	GCNNGC	3 cut(s)	167, 376, 385
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	6 cut(s)	167, 177, 206, 207, 425, 477
CseI	GACGC	1 cut(s)	140
CviAII	CATG	3 cut(s)	280, 341, 516
CviJI	RGCY	9 cut(s)	74, 100, 113, 169, 179, 189, 208, 366, 478
CviKI_1	RGCY	9 cut(s)	74, 100, 113, 169, 179, 189, 208, 366, 478
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	2 cut(s)	72, 111
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	425
EcoO109I	RGGNCCY	2 cut(s)	207, 425
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	283, 344, 519
FaiI	YATR	7 cut(s)	281, 342, 409, 411, 508, 510, 517
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	3 cut(s)	279, 340, 515
FauI	CCCGC	2 cut(s)	158, 229
FauNDI	CATATG	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	187, 315, 448
FokI	GGATG	3 cut(s)	14, 215, 346
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	187, 315, 448
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	187, 315, 448
GsuI	CTGGAG	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	6 cut(s)	74, 113, 169, 179, 208, 478
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	283, 344, 519
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	331
Hpy188I	TCNGA	3 cut(s)	270, 330, 463
Hpy188III	TCNNGA	2 cut(s)	232, 341
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	4, 186, 297, 351, 383, 506
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 148, 205, 248, 380, 384
HpyF3I	CTNAG	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	283, 344, 519
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	57
Lsp1109I	GCAGC	2 cut(s)	198, 459
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	88, 484
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	2 cut(s)	353, 436
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	5 cut(s)	41, 53, 121, 253, 491
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	6 cut(s)	131, 148, 205, 248, 380, 384
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	3 cut(s)	283, 344, 519
NlaIV	GGNNCC	4 cut(s)	178, 208, 426, 479
PagI	TCATGA	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	3 cut(s)	222, 255, 282
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	188, 316, 449
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	4 cut(s)	178, 208, 426, 479
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	6 cut(s)	167, 177, 206, 207, 425, 477
PspPPI	RGGWCCY	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	188
SatI	GCNGC	3 cut(s)	187, 315, 448
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	6 cut(s)	167, 177, 206, 207, 425, 477
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	102, 205, 368, 430
SfaNI	GCATC	1 cut(s)	396
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	425
Sse9I	AATT	2 cut(s)	353, 436
SsiI	CCGC	4 cut(s)	125, 165, 222, 315
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	75
TaqII	GACCGA	2 cut(s)	110, 299
TasI	AATT	2 cut(s)	353, 436
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	2 cut(s)	244, 316
TseI	GCWGC	2 cut(s)	186, 447
TspRI	CASTG	2 cut(s)	244, 316
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	353, 436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.