Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011944

Physical Location & Seq

Genomic Coordinates Forward (+)

44218750 .. 44220297

Gene Structure 1548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCATTTGGGTGGCGTTCTCACTGTGTCTCTGCTTGTCGATCTCACTCCTCTTCGTAGCAGTAACGGTCACTTTTCCTCTCTCCATCCATCTTCCCTCAATAAACTAACCAAACTCTACCAAACGGCTACATCATTGCCCTTCTCGTCTCTTCCTCTCTTTCTCCCTCTTAAAAGCCGCAAGCAAGTGAAGCAACCAAAGCAAACCACTCTCACTCCTCACTCGTCTCTCTCCCTCTCCCTCTCCCTCTCCCCCAAAATGTACACAAGCTTCCTTCTTCTTCTCTCTTTCCTCCTCTCACTCGCCGCCCTCTCCAACGCCCAAAACAGCGTCGTCACGATGGAGCTGTGGTGCGTGGCCAAGAACAACGCCGACGACTCTGCCCTCCAGTCCGCTCTCGACTGGGCCTGCGGGGCCGGCGGCGCCAACTGCAGCCCTATGCAGCAAGGTGGGCCCTGCTACGACCCATCTGACATCCAGAACACCGCGTCGTACGCCTTCAACGACTACTTTCTCAAACACGGCATGACCGATGACAGCTGCAACTTCGATAACACTGCCGCAGTCACCTCTTTGAATCCCAGTTTTGGTAATTGCAAGTTCCCATCCAGCTTGTCAGGGAGCAATAGAAGTTCGAGTTCATCGACAGCATCATATGGGTTGGGGCCTAGTCAAGATCTGAATGGCAGCAATAAAATTTCGCAGCAACTGGTTTTGATACCCTTGATTACCAGTCTTTTGCTCATTGCCTCCTATAATACATGGGTCATCTGTTTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

260

Amino Acids

27.73

Weight (kDa)

8.14

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	116 - 187	1.1e-19	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58100 AT3G58100
fragaria_vesca	FvH4_6g27020 FvH4_6g27020 FvH4_6g27020
malus_domestica	MD09G1240800.v1.1 MD17G1233700.v1.1
prunus_persica	Prupe.3G125100_v2.0.a1
pyrus_communis	pycom09g15960 pycom17g23680
rosa_chinensis	RchiOBHm_Chr2g0128881
rosa_laevigata	RLG00000019037
rosa_multiflora	Rmu_sc0001643.1_g000031
rosa_roxburghii	Rroxscaffold_2G00115140
rosa_rugosa	Rorug02G0282100
rosa_samantha	Rh2AG334500 Rh2CG321500 Rh2DG359200
rosa_wichuraiana	Rw2G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	395
AccII	CGCG	1 cut(s)	488
AciI	CCGC	7 cut(s)	178, 306, 393, 411, 420, 486, 561
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	696
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	2 cut(s)	263, 494
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	2 cut(s)	502, 577
AluBI	AGCT	4 cut(s)	270, 346, 540, 612
AluI	AGCT	4 cut(s)	270, 346, 540, 612
Alw26I	GTCTC	3 cut(s)	33, 153, 231
AlwNI	CAGNNNCTG	1 cut(s)	709
AoxI	GGCC	5 cut(s)	357, 405, 414, 452, 665
ApaI	GGGCCC	1 cut(s)	456
ApeKI	GCWGC	5 cut(s)	432, 442, 540, 687, 703
ApoI	RAATTY	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	5 cut(s)	405, 414, 452, 453, 665
AsuHPI	GGTGA	1 cut(s)	559
BaeGI	GKGCMC	1 cut(s)	456
BalI	TGGCCA	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	456
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbvI	GCAGC	5 cut(s)	444, 454, 527, 699, 715
BccI	CCATC	5 cut(s)	93, 97, 334, 475, 613
BceAI	ACGGC	2 cut(s)	141, 538
BcgI	CGANNNNNNTGC	4 cut(s)	362, 396, 539, 573
BcoDI	GTCTC	3 cut(s)	33, 153, 231
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	1 cut(s)	430
BfoI	RGCGCY	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	9 cut(s)	178, 306, 421, 433, 443, 541, 561, 688, 704
BlsI	GCNGC	9 cut(s)	179, 307, 422, 434, 444, 542, 562, 689, 705
BmgT120I	GGNCC	5 cut(s)	405, 414, 452, 453, 665
BmiI	GGNNCC	4 cut(s)	415, 424, 454, 666
BmrI	ACTGGG	2 cut(s)	412, 576
BmsI	GCATC	1 cut(s)	659
BmuI	ACTGGG	2 cut(s)	412, 576
BpmI	CTGGAG	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	423
BsaXI	ACNNNNNCTCC	4 cut(s)	199, 229, 335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	5 cut(s)	388, 407, 582, 714, 732
Bse3DI	GCAATG	2 cut(s)	134, 744
BseGI	GGATG	3 cut(s)	85, 474, 605
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	2 cut(s)	134, 744
BseNI	ACTGG	5 cut(s)	388, 407, 582, 714, 732
BseRI	GAGGAG	3 cut(s)	39, 207, 284
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	5 cut(s)	444, 454, 527, 699, 715
Bsh1236I	CGCG	1 cut(s)	488
BshFI	GGCC	5 cut(s)	359, 407, 416, 454, 667
BshNI	GGYRCC	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	417
BsiWI	CGTACG	1 cut(s)	492
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	3 cut(s)	33, 153, 231
BsmBI	CGTCTC	2 cut(s)	153, 231
BsnI	GGCC	5 cut(s)	359, 407, 416, 454, 667
Bsp120I	GGGCCC	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	40, 676
BspACI	CCGC	7 cut(s)	178, 306, 393, 411, 420, 486, 561
BspANI	GGCC	5 cut(s)	359, 407, 416, 454, 667
BspFNI	CGCG	1 cut(s)	488
BspLI	GGNNCC	4 cut(s)	415, 424, 454, 666
BspMAI	CTGCAG	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	134, 744
BsrFI	RCCGGY	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	5 cut(s)	388, 407, 582, 714, 732
BssAI	RCCGGY	1 cut(s)	416
BssMI	GATC	2 cut(s)	40, 676
BssNI	GRCGYC	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	25, 68
Bst6I	CTCTTC	2 cut(s)	57, 156
BstACI	GRCGYC	1 cut(s)	423
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	182, 409, 418
BstF5I	GGATG	3 cut(s)	85, 474, 605
BstFNI	CGCG	1 cut(s)	488
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	2 cut(s)	43, 679
BstMAI	GTCTC	3 cut(s)	33, 153, 231
BstMBI	GATC	2 cut(s)	40, 676
BstMWI	GCNNNNNNNGC	8 cut(s)	190, 199, 413, 417, 422, 429, 451, 494
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	456
BstUI	CGCG	1 cut(s)	488
BstV1I	GCAGC	5 cut(s)	444, 454, 527, 699, 715
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	5 cut(s)	359, 407, 416, 454, 667
BtsCI	GGATG	3 cut(s)	85, 474, 605
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	21, 555
Cac8I	GCNNGC	3 cut(s)	182, 409, 418
CaiI	CAGNNNCTG	1 cut(s)	709
CfoI	GCGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	5 cut(s)	405, 414, 452, 453, 665
CseI	GACGC	2 cut(s)	319, 477
Csp6I	GTAC	2 cut(s)	262, 493
CviAII	CATG	2 cut(s)	526, 762
CviQI	GTAC	2 cut(s)	262, 493
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	2 cut(s)	42, 678
DpnII	GATC	2 cut(s)	40, 676
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	57, 156
EarI	CTCTTC	2 cut(s)	57, 156
Eco24I	GRGCYC	1 cut(s)	456
EcoO109I	RGGNCCY	2 cut(s)	453, 665
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	456
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
Esp3I	CGTCTC	2 cut(s)	153, 231
FaeI	CATG	2 cut(s)	529, 765
FaiI	YATR	6 cut(s)	440, 527, 655, 657, 756, 763
FatI	CATG	2 cut(s)	525, 761
FauI	CCCGC	1 cut(s)	404
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	9 cut(s)	178, 306, 421, 433, 443, 541, 561, 688, 704
FokI	GGATG	3 cut(s)	72, 461, 592
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	9 cut(s)	178, 306, 421, 433, 443, 541, 561, 688, 704
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	9 cut(s)	178, 306, 421, 433, 443, 541, 561, 688, 704
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	5 cut(s)	359, 407, 416, 454, 667
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	2 cut(s)	319, 477
HhaI	GCGC	1 cut(s)	425
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	529, 765
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	2 cut(s)	377, 577
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	472, 681
Hpy188III	TCNNGA	5 cut(s)	337, 398, 478, 674, 780
Hpy8I	GTNNAC	1 cut(s)	264
Hpy99I	CGWCG	3 cut(s)	335, 377, 493
HpyAV	CCTTC	3 cut(s)	151, 284, 508
HpyCH4III	ACNGT	2 cut(s)	25, 68
HpyCH4V	TGCA	5 cut(s)	4, 432, 442, 543, 597
HpyF10VI	GCNNNNNNNGC	8 cut(s)	190, 199, 413, 417, 422, 429, 451, 494
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	529, 765
HspAI	GCGC	1 cut(s)	423
KasI	GGCGCC	1 cut(s)	422
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	40, 676
LmnI	GCTCC	2 cut(s)	343, 621
Lsp1109I	GCAGC	5 cut(s)	444, 454, 527, 699, 715
LweI	GCATC	1 cut(s)	659
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	4 cut(s)	62, 68, 334, 565
MalI	GATC	2 cut(s)	42, 678
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	2 cut(s)	40, 676
MboII	GAAGA	5 cut(s)	44, 84, 143, 269, 272
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	456
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	2 cut(s)	592, 696
MluNI	TGGCCA	1 cut(s)	359
Mly113I	GGCGCC	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	339
Mox20I	TGGCCA	1 cut(s)	359
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	540
MspI	CCGG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	488
MwoI	GCNNNNNNNGC	8 cut(s)	190, 199, 413, 417, 422, 429, 451, 494
NaeI	GCCGGC	1 cut(s)	418
NarI	GGCGCC	1 cut(s)	423
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	2 cut(s)	40, 676
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	2 cut(s)	529, 765
NlaIV	GGNNCC	4 cut(s)	415, 424, 454, 666
NmuCI	GTSAC	3 cut(s)	68, 334, 565
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	3 cut(s)	501, 528, 641
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	577
Pfl23II	CGTACG	1 cut(s)	492
PkrI	GCNGC	9 cut(s)	179, 307, 422, 434, 444, 542, 562, 689, 705
PleI	GAGTC	1 cut(s)	371
PluTI	GGCGCC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	371
PspLI	CGTACG	1 cut(s)	492
PspN4I	GGNNCC	4 cut(s)	415, 424, 454, 666
PspOMI	GGGCCC	1 cut(s)	452
PspPI	GGNCC	5 cut(s)	405, 414, 452, 453, 665
PstI	CTGCAG	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	540
RsaI	GTAC	2 cut(s)	263, 494
RsaNI	GTAC	2 cut(s)	262, 493
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	9 cut(s)	178, 306, 421, 433, 443, 541, 561, 688, 704
Sau3AI	GATC	2 cut(s)	40, 676
Sau96I	GGNCC	5 cut(s)	405, 414, 452, 453, 665
SchI	GAGTC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	6 cut(s)	272, 348, 451, 542, 572, 614
SfaNI	GCATC	1 cut(s)	659
SfcI	CTRYAG	1 cut(s)	430
SfiI	GGCCNNNNNGGCC	1 cut(s)	413
SfoI	GGCGCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	592, 696
SsiI	CCGC	7 cut(s)	178, 306, 393, 411, 420, 486, 561
SspDI	GGCGCC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	669
TaaI	ACNGT	2 cut(s)	25, 68
TaqI	TCGA	5 cut(s)	39, 399, 549, 635, 644
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	2 cut(s)	592, 696
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	4 cut(s)	180, 308, 423, 563
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	28, 562
TseFI	GTSAC	3 cut(s)	68, 334, 565
TseI	GCWGC	5 cut(s)	432, 442, 540, 687, 703
Tsp45I	GTSAC	3 cut(s)	68, 334, 565
TspDTI	ATGAA	1 cut(s)	630
TspRI	CASTG	2 cut(s)	28, 562
XapI	RAATTY	1 cut(s)	696
XspI	CTAG	1 cut(s)	669
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.