Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011944

Physical Location & Seq

Genomic Coordinates Reverse (-)

11457077 .. 11458653

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G125100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCACAAAGGCTTAGCTTTCTGCCTCCTCCTCTCACTCTCGATCTGCAACTTGATCCCGCCCTCCATGGCCAGGAACGGCGTCGTTACCATGGAGCTGTGGTGCGTGGCGAAGAACAACGCCGAGGATGCCCAGCTGCAGTCGGCGCTGGACTGGGCCTGCGGAGCTGGTGGGGCTGATTGCAGCCCAATCCAGCAAGGTGGGCCCTGCTACGACCCCACCGACATCCAAAACACCGCATCCTACGTCTTCAACGACTACTTTCTAAAACACGGCATGACCGACGAAAGCTGCAACTTTGATCACACTGCCGCTCTCACTTCTTTGAACCCCAGTTATAATAAGTGCAAATTCCCATCCAGCTTGTCATCGACCAATGCAAGCCTTTCAAGTCCATCAACAGCGTATGGAATGGGGCCCAGTGAAGATCTCAACGGCAGCAATCAGATTTCTCAGCTATGGATTTGGCATCTCATGACCAGTCTTCTGCTCATTGCATTTTCATGGGTAATGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0001872 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

173

Amino Acids

18.56

Weight (kDa)

4.69

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58100 AT3G58100
fragaria_vesca	FvH4_6g27020 FvH4_6g27020 FvH4_6g27020
malus_domestica	MD09G1240800.v1.1 MD17G1233700.v1.1
prunus_persica	Prupe.3G125100_v2.0.a1
pyrus_communis	pycom09g15960 pycom17g23680
rosa_chinensis	RchiOBHm_Chr2g0128881
rosa_laevigata	RLG00000019037
rosa_multiflora	Rmu_sc0001643.1_g000031
rosa_roxburghii	Rroxscaffold_2G00115140
rosa_rugosa	Rorug02G0282100
rosa_samantha	Rh2AG334500 Rh2CG321500 Rh2DG359200
rosa_wichuraiana	Rw2G027070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AccBSI	CCGCTC	1 cut(s)	314
AciI	CCGC	4 cut(s)	59, 162, 237, 312
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	253, 328, 390
AjnI	CCWGG	1 cut(s)	71
AluBI	AGCT	7 cut(s)	17, 97, 136, 167, 291, 363, 457
AluI	AGCT	7 cut(s)	17, 97, 136, 167, 291, 363, 457
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	4 cut(s)	69, 156, 203, 416
ApaI	GGGCCC	2 cut(s)	207, 420
ApeKI	GCWGC	4 cut(s)	136, 183, 291, 438
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	5 cut(s)	156, 203, 204, 416, 417
BaeGI	GKGCMC	2 cut(s)	207, 420
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	207, 420
BbsI	GAAGAC	2 cut(s)	241, 476
BbvI	GCAGC	4 cut(s)	123, 195, 278, 450
BccI	CCATC	2 cut(s)	364, 403
BceAI	ACGGC	3 cut(s)	94, 289, 451
BciT130I	CCWGG	1 cut(s)	73
BclI	TGATCA	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	149
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	5 cut(s)	137, 184, 292, 312, 439
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	5 cut(s)	138, 185, 293, 313, 440
Bme1390I	CCNGG	1 cut(s)	73
BmgT120I	GGNCC	5 cut(s)	156, 203, 204, 416, 417
BmiI	GGNNCC	3 cut(s)	205, 417, 418
BmrFI	CCNGG	1 cut(s)	73
BmrI	ACTGGG	3 cut(s)	163, 327, 414
BmsI	GCATC	3 cut(s)	118, 248, 478
BmuI	ACTGGG	3 cut(s)	163, 327, 414
BpiI	GAAGAC	2 cut(s)	241, 476
Bpu1102I	GCTNAGC	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	66, 90, 123
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	4 cut(s)	158, 333, 420, 480
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	3 cut(s)	66, 90, 123
BseGI	GGATG	4 cut(s)	133, 225, 239, 356
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	4 cut(s)	158, 333, 420, 480
BseRI	GAGGAG	2 cut(s)	17, 20
BseSI	GKGCMC	2 cut(s)	207, 420
BseXI	GCAGC	4 cut(s)	123, 195, 278, 450
BseYI	CCCAGC	1 cut(s)	132
BshFI	GGCC	4 cut(s)	71, 158, 205, 418
BslI	CCNNNNNNNGG	1 cut(s)	72
BsnI	GGCC	4 cut(s)	71, 158, 205, 418
Bsp120I	GGGCCC	2 cut(s)	203, 416
Bsp1286I	GDGCHC	2 cut(s)	207, 420
Bsp143I	GATC	4 cut(s)	42, 54, 301, 427
Bsp1720I	GCTNAGC	1 cut(s)	13
Bsp19I	CCATGG	2 cut(s)	66, 90
BspACI	CCGC	4 cut(s)	59, 162, 237, 312
BspANI	GGCC	4 cut(s)	71, 158, 205, 418
BspCNI	CTCAG	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	205, 417, 418
BspMAI	CTGCAG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	49
BsrBI	CCGCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	492
BsrI	ACTGG	4 cut(s)	158, 333, 420, 480
BssECI	CCNNGG	3 cut(s)	66, 90, 123
BssMI	GATC	4 cut(s)	42, 54, 301, 427
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	66, 90
Bst2UI	CCWGG	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	160, 382
BstDEI	CTNAG	2 cut(s)	13, 453
BstDSI	CCRYGG	2 cut(s)	66, 90
BstF5I	GGATG	4 cut(s)	133, 225, 239, 356
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	4 cut(s)	45, 57, 304, 430
BstMBI	GATC	4 cut(s)	42, 54, 301, 427
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 145, 164, 173, 202
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	137
BstSLI	GKGCMC	2 cut(s)	207, 420
BstV1I	GCAGC	4 cut(s)	123, 195, 278, 450
BstV2I	GAAGAC	2 cut(s)	241, 476
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	4 cut(s)	71, 158, 205, 418
BtgI	CCRYGG	2 cut(s)	66, 90
BtsCI	GGATG	4 cut(s)	133, 225, 239, 356
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 427
Cac8I	GCNNGC	2 cut(s)	160, 382
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	5 cut(s)	156, 203, 204, 416, 417
CseI	GACGC	1 cut(s)	70
CviAII	CATG	5 cut(s)	67, 91, 277, 475, 504
DdeI	CTNAG	2 cut(s)	13, 453
DpnI	GATC	4 cut(s)	44, 56, 303, 429
DpnII	GATC	4 cut(s)	42, 54, 301, 427
EaeI	YGGCCR	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	66, 90
Eco24I	GRGCYC	2 cut(s)	207, 420
EcoO109I	RGGNCCY	2 cut(s)	204, 416
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	2 cut(s)	66, 90
EcoT38I	GRGCYC	2 cut(s)	207, 420
ErhI	CCWWGG	2 cut(s)	66, 90
FaeI	CATG	5 cut(s)	70, 94, 280, 478, 507
FaiI	YATR	8 cut(s)	68, 92, 278, 339, 408, 460, 476, 505
FatI	CATG	5 cut(s)	66, 90, 276, 474, 503
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	137, 184, 292, 312, 439
FokI	GGATG	4 cut(s)	140, 212, 226, 343
FriOI	GRGCYC	2 cut(s)	207, 420
Fsp4HI	GCNGC	5 cut(s)	137, 184, 292, 312, 439
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	5 cut(s)	137, 184, 292, 312, 439
GsaI	CCCAGC	1 cut(s)	136
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	4 cut(s)	71, 158, 205, 418
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	5 cut(s)	70, 94, 280, 478, 507
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	2 cut(s)	40, 475
Hpy99I	CGWCG	2 cut(s)	86, 287
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	8 cut(s)	4, 48, 139, 183, 294, 348, 380, 497
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 145, 164, 173, 202
HpyF3I	CTNAG	2 cut(s)	13, 453
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	70, 94, 280, 478, 507
HspAI	GCGC	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	42, 54, 301, 427
LmnI	GCTCC	2 cut(s)	94, 164
Lsp1109I	GCAGC	4 cut(s)	123, 195, 278, 450
LweI	GCATC	3 cut(s)	118, 248, 478
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	4 cut(s)	44, 56, 303, 429
MbiI	CCGCTC	1 cut(s)	314
MboI	GATC	4 cut(s)	42, 54, 301, 427
MboII	GAAGA	4 cut(s)	124, 241, 437, 476
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	2 cut(s)	207, 420
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	71
MnlI	CCTC	5 cut(s)	35, 38, 41, 73, 118
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
MslI	CAYNNNNRTG	1 cut(s)	502
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	5 cut(s)	128, 145, 164, 173, 202
NcoI	CCATGG	2 cut(s)	66, 90
NdeII	GATC	4 cut(s)	42, 54, 301, 427
NlaIII	CATG	5 cut(s)	70, 94, 280, 478, 507
NlaIV	GGNNCC	3 cut(s)	205, 417, 418
NmeAIII	GCCGAG	1 cut(s)	148
PagI	TCATGA	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 252, 279
PkrI	GCNGC	5 cut(s)	138, 185, 293, 313, 440
PsiI	TTATAA	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	71
PspN4I	GGNNCC	3 cut(s)	205, 417, 418
PspOMI	GGGCCC	2 cut(s)	203, 416
PspPI	GGNCC	5 cut(s)	156, 203, 204, 416, 417
PstI	CTGCAG	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	502
SatI	GCNGC	5 cut(s)	137, 184, 292, 312, 439
Sau3AI	GATC	4 cut(s)	42, 54, 301, 427
Sau96I	GGNCC	5 cut(s)	156, 203, 204, 416, 417
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	2 cut(s)	207, 420
SetI	ASST	9 cut(s)	19, 99, 138, 169, 202, 249, 293, 365, 459
SfaNI	GCATC	3 cut(s)	118, 248, 478
SfcI	CTRYAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	502
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	4 cut(s)	59, 162, 237, 312
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	66, 90
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	41, 371
TaqII	GACCGA	1 cut(s)	296
TasI	AATT	1 cut(s)	350
TauI	GCSGC	1 cut(s)	314
TscAI	CASTG	2 cut(s)	313, 427
TseI	GCWGC	4 cut(s)	136, 183, 291, 438
TspDTI	ATGAA	1 cut(s)	492
TspRI	CASTG	2 cut(s)	313, 427
XapI	RAATTY	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.