AT3G58140

Ferredoxin-fold anticodon binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
21529731 .. 21532572
2842 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58140.1

Sequence Viewer

Length: 1290 bp
ATGACCGTTTTCTCAGTTCAGTCCACTATCTTCAGTCGAGCCTCCGTAGCTCTTCTCTCGAGCAATGGCTTCAAACGATTTTCATTCGTTTCTTCGTTTTCTTCCTCCGCCGCTTACTCTCCACCTAAAATGAGGAAGCGTCGCTACCCAATCGTCTCTGCTGTTGATATTGGTGGCGTCGCAATCGCTAGAAATGATGTGGTGAGAGAGGATGATCCAACAAATAATGTACCAGATTCGATTTTCTCTAAACTAGGAATGCAGCTACACAGAAGAGATAAGCATCCGATTGGTATCTTAAAAAACGCTATCTACGATTACTTTGATTCCAATTACTCAAACAAGTTTGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAAACTTTGATGATGTGCTAGTCCCTGCTGATCATGTAAGCAGAAGTCTTAATGACACGTACTATGTAGACTCACAAACTGTTTTGAGATGTCATACGAGTGCTCACCAAGCTGAGCTGTTGAGGAAAGGTCATAGTCGTTTCCTTGTAACCGGGGATGTTTACCGAAGAGATTCTATTGACTCTACTCATTATCCGGTTTTCCATCAGATGGAAGGTTTTTGTGTTTTCTCTCCTGAGGACTGGAACGGGTCTGGCAAGGATTCCACTTTGTATGCTGCTGAGGATTTGAAGAAATGTCTTGAGGGATTGGCACGCCACTTATTTGGTTCGGTGGAGATGAGATGGGTTGATACATATTTCCCATTTACCAATCCATCTTTTGAGCTTGAGATATATTTTAAGGAAGACTGGTTGGAGGTTTTGGGCTGTGGGGTGACCGAGCAAGTAATTCTGAAACAAAGTGGATTAGAAAATAATGTTGCTTGGGCCTTCGGACTTGGACTTGAGAGACTTGCTATGGTTTTGTTTGACATACCTGATATACGATTTTTCTGGTCATCCGATGAACGATTCACGTCCCAGTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAGTATCCTCCTTGTTACAAGGACATCAGTTTCTGGATAAGTGATTTGTTCACAGAGAATAATTTTTGTGAAGTTGTTAGAGGAATTGCTGGGGATCTTGTTGAAGAGGTGAAGTTAATTGACCAATTCACCAATAAGAAGAAAGGGCTGACGAGTCATTGTTACAGAATCGTGTTCCGTTCCATGGAGCGGTCTCTTACGGACGAGGAGGTCAATGATCTGCAGAGTAAAGTGCGTGATGAGGTGCAGAAGAAGCTAAATGTCGAATTAAGGTGA

Protein Analysis

429

Amino Acids

49.25

Weight (kDa)

5.99

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2d PF01409 90 - 325 3.1e-51 tRNA synthetases class II core domain (F)
FDX-ACB PF03147 338 - 429 5.5e-23 Ferredoxin-fold anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1223
AccB7I CCANNNNNTGG 1 cut(s) 598
AccBSI CCGCTC 1 cut(s) 1204
AccI GTMKAC 1 cut(s) 456
AciI CCGC 3 cut(s) 108, 111, 1204
AclWI GGATC 2 cut(s) 209, 1116
AcsI RAATTY 1 cut(s) 998
AcuI CTGAAG 1 cut(s) 16
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 2 cut(s) 231, 449
AfiI CCNNNNNNNGG 3 cut(s) 598, 1198, 1203
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 5 cut(s) 73, 679, 1003, 1014, 1118
AjiI CACGTC 1 cut(s) 966
AluBI AGCT 6 cut(s) 50, 265, 500, 505, 775, 1270
AluI AGCT 6 cut(s) 50, 265, 500, 505, 775, 1270
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 3 cut(s) 160, 892, 1212
AlwI GGATC 2 cut(s) 209, 1116
AlwNI CAGNNNCTG 1 cut(s) 1047
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 1 cut(s) 876
ApeKI GCWGC 2 cut(s) 262, 665
ApoI RAATTY 1 cut(s) 998
Asp700I GAANNNNTTC 1 cut(s) 559
AspS9I GGNCC 1 cut(s) 876
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 5 cut(s) 214, 485, 835, 1135, 1135
AsuII TTCGAA 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 624
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbsI GAAGAC 2 cut(s) 366, 801
Bbv12I GWGCWC 1 cut(s) 493
BbvCI CCTCAGC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 274, 652
BccI CCATC 4 cut(s) 592, 600, 726, 772
BciVI GTATCC 1 cut(s) 1029
BclI TGATCA 1 cut(s) 418
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 3 cut(s) 160, 892, 1212
BfaI CTAG 3 cut(s) 189, 254, 407
BfmI CTRYAG 1 cut(s) 1235
BfuI GTATCC 1 cut(s) 1029
BisI GCNGC 3 cut(s) 111, 263, 666
BlpI GCTNAGC 1 cut(s) 501
BlsI GCNGC 3 cut(s) 112, 264, 667
Bme1390I CCNGG 1 cut(s) 541
BmeT110I CYCGRG 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 966
BmgT120I GGNCC 1 cut(s) 876
BmrFI CCNGG 1 cut(s) 541
BmrI ACTGGG 1 cut(s) 964
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 964
BpiI GAAGAC 2 cut(s) 366, 801
Bpu10I CCTNAGC 1 cut(s) 669
Bpu1102I GCTNAGC 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 357
BpuEI CTTGAG 3 cut(s) 710, 797, 914
BpuMI CCSGG 1 cut(s) 541
BsaAI YACGTR 1 cut(s) 447
BsaBI GATNNNNATC 2 cut(s) 282, 293
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 1212
BsaJI CCNNGG 2 cut(s) 540, 1197
BsaWI WCCGGW 1 cut(s) 583
Bsc4I CCNNNNNNNGG 3 cut(s) 598, 1198, 1203
Bse1I ACTGG 3 cut(s) 635, 803, 970
Bse21I CCTNAGG 1 cut(s) 624
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 2 cut(s) 282, 293
BseDI CCNNGG 2 cut(s) 540, 1197
BseGI GGATG 4 cut(s) 217, 283, 550, 947
BseJI GATNNNNATC 2 cut(s) 282, 293
BseLI CCNNNNNNNGG 3 cut(s) 598, 1198, 1203
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 4 cut(s) 27, 492, 615, 660
BseNI ACTGG 3 cut(s) 635, 803, 970
BseRI GAGGAG 1 cut(s) 1235
BseXI GCAGC 2 cut(s) 274, 652
BseYI CCCAGC 1 cut(s) 1103
BsgI GTGCAG 1 cut(s) 1280
BshFI GGCC 1 cut(s) 878
BsiHKAI GWGCWC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 2 cut(s) 540, 584
BslFI GGGAC 2 cut(s) 395, 952
BslI CCNNNNNNNGG 3 cut(s) 598, 1198, 1203
BsmAI GTCTC 3 cut(s) 160, 892, 1212
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 395, 952
BsmI GAATGC 1 cut(s) 264
BsnI GGCC 1 cut(s) 878
Bso31I GGTCTC 1 cut(s) 1212
BsoBI CYCGRG 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 4 cut(s) 214, 418, 1108, 1231
Bsp1720I GCTNAGC 1 cut(s) 501
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 3 cut(s) 108, 111, 1204
BspANI GGCC 1 cut(s) 878
BspCNI CTCAG 4 cut(s) 26, 493, 616, 661
BspMAI CTGCAG 1 cut(s) 1239
BspPI GGATC 2 cut(s) 209, 1116
BspQI GCTCTTC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 1212
BsrBI CCGCTC 1 cut(s) 1204
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 3 cut(s) 635, 803, 970
BssECI CCNNGG 2 cut(s) 540, 1197
BssMI GATC 4 cut(s) 214, 418, 1108, 1231
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 1197
Bst4CI ACNGT 2 cut(s) 7, 469
Bst6I CTCTTC 4 cut(s) 57, 268, 550, 1113
BstACI GRCGYC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 447
BstBI TTCGAA 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 703
BstDEI CTNAG 4 cut(s) 13, 501, 624, 669
BstDSI CCRYGG 1 cut(s) 1197
BstEII GGTNACC 1 cut(s) 823
BstF5I GGATG 4 cut(s) 217, 283, 550, 947
BstKTI GATC 4 cut(s) 217, 421, 1111, 1234
BstMAI GTCTC 3 cut(s) 160, 892, 1212
BstMBI GATC 4 cut(s) 214, 418, 1108, 1231
BstMWI GCNNNNNNNGC 3 cut(s) 47, 497, 1267
BstPI GGTNACC 1 cut(s) 823
BstSCI CCNGG 1 cut(s) 539
BstSFI CTRYAG 1 cut(s) 1235
BstV1I GCAGC 2 cut(s) 274, 652
BstV2I GAAGAC 2 cut(s) 366, 801
BstX2I RGATCY 1 cut(s) 1108
BstXI CCANNNNNNTGG 1 cut(s) 713
BstYI RGATCY 1 cut(s) 1108
Bsu36I CCTNAGG 1 cut(s) 624
BsuI GTATCC 1 cut(s) 1029
BsuRI GGCC 1 cut(s) 878
BtgI CCRYGG 1 cut(s) 1197
BtrI CACGTC 1 cut(s) 966
BtsCI GGATG 4 cut(s) 217, 283, 550, 947
Cac8I GCNNGC 1 cut(s) 703
CaiI CAGNNNCTG 1 cut(s) 1047
Cfr13I GGNCC 1 cut(s) 876
CseI GACGC 2 cut(s) 128, 166
Csp6I GTAC 2 cut(s) 230, 448
CviAII CATG 2 cut(s) 422, 1198
CviQI GTAC 2 cut(s) 230, 448
DdeI CTNAG 4 cut(s) 13, 501, 624, 669
DpnI GATC 4 cut(s) 216, 420, 1110, 1233
DpnII GATC 4 cut(s) 214, 418, 1108, 1231
DrdI GACNNNNNNGTC 1 cut(s) 1223
DseDI GACNNNNNNGTC 1 cut(s) 1223
Eam1104I CTCTTC 4 cut(s) 57, 268, 550, 1113
EarI CTCTTC 4 cut(s) 57, 268, 550, 1113
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 1197
Eco31I GGTCTC 1 cut(s) 1212
Eco57I CTGAAG 1 cut(s) 16
Eco81I CCTNAGG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 58
Eco91I GGTNACC 1 cut(s) 823
EcoO65I GGTNACC 1 cut(s) 823
EcoT14I CCWWGG 1 cut(s) 1197
ErhI CCWWGG 1 cut(s) 1197
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 2 cut(s) 425, 1201
FalI AAGNNNNNCTT 4 cut(s) 377, 409, 972, 1004
FaqI GGGAC 2 cut(s) 395, 952
FatI CATG 2 cut(s) 421, 1197
FbaI TGATCA 1 cut(s) 418
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 3 cut(s) 111, 263, 666
FokI GGATG 4 cut(s) 224, 270, 557, 934
Fsp4HI GCNGC 3 cut(s) 111, 263, 666
FspBI CTAG 3 cut(s) 189, 254, 407
GluI GCNGC 3 cut(s) 111, 263, 666
GsaI CCCAGC 1 cut(s) 1107
HaeIII GGCC 1 cut(s) 878
HapII CCGG 2 cut(s) 540, 584
HgaI GACGC 2 cut(s) 128, 166
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 2 cut(s) 425, 1201
HinfI GANTC 9 cut(s) 236, 326, 458, 560, 569, 650, 960, 1168, 1182
HpaII CCGG 2 cut(s) 540, 584
HphI GGTGA 5 cut(s) 214, 485, 835, 1135, 1135
Hpy166II GTNNAC 4 cut(s) 24, 457, 550, 1065
Hpy188I TCNGA 5 cut(s) 288, 597, 843, 884, 952
Hpy188III TCNNGA 4 cut(s) 58, 623, 689, 1048
Hpy8I GTNNAC 4 cut(s) 24, 457, 550, 1065
Hpy99I CGWCG 2 cut(s) 144, 182
HpyAV CCTTC 2 cut(s) 596, 889
HpyCH4III ACNGT 2 cut(s) 7, 469
HpyCH4IV ACGT 2 cut(s) 446, 965
HpyCH4V TGCA 3 cut(s) 262, 1237, 1261
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 497, 1267
HpyF3I CTNAG 4 cut(s) 13, 501, 624, 669
HpySE526I ACGT 2 cut(s) 446, 965
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 2 cut(s) 425, 1201
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 4 cut(s) 214, 418, 1108, 1231
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 1201
Lsp1109I GCAGC 2 cut(s) 274, 652
LweI GCATC 1 cut(s) 292
MaeI CTAG 3 cut(s) 189, 254, 407
MaeII ACGT 2 cut(s) 446, 965
MaeIII GTNAC 5 cut(s) 376, 535, 823, 1028, 1175
MalI GATC 4 cut(s) 216, 420, 1110, 1233
MbiI CCGCTC 1 cut(s) 1204
MboI GATC 4 cut(s) 214, 418, 1108, 1231
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 1108
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 9 cut(s) 331, 372, 837, 998, 1075, 1098, 1131, 1139, 1280
MlyI GAGTC 3 cut(s) 452, 563, 1177
MmeI TCCRAC 2 cut(s) 242, 783
MroXI GAANNNNTTC 1 cut(s) 559
MseI TTAA 5 cut(s) 299, 438, 789, 1130, 1283
MslI CAYNNNNRTG 1 cut(s) 486
MspI CCGG 2 cut(s) 540, 584
MspR9I CCNGG 1 cut(s) 541
MunI CAATTG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 47, 497, 1267
NciI CCSGG 1 cut(s) 541
NcoI CCATGG 1 cut(s) 1197
NdeII GATC 4 cut(s) 214, 418, 1108, 1231
NlaIII CATG 2 cut(s) 425, 1201
NmuCI GTSAC 1 cut(s) 823
NspV TTCGAA 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 559
PfeI GAWTC 6 cut(s) 236, 326, 560, 650, 960, 1182
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 3 cut(s) 112, 264, 667
PleI GAGTC 3 cut(s) 452, 563, 1176
PpsI GAGTC 3 cut(s) 452, 563, 1176
Ppu21I YACGTR 1 cut(s) 447
PspEI GGTNACC 1 cut(s) 823
PspFI CCCAGC 1 cut(s) 1103
PspPI GGNCC 1 cut(s) 876
PstI CTGCAG 1 cut(s) 1239
PstNI CAGNNNCTG 1 cut(s) 1047
PsuI RGATCY 1 cut(s) 1108
RsaI GTAC 2 cut(s) 231, 449
RsaNI GTAC 2 cut(s) 230, 448
RseI CAYNNNNRTG 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 5 cut(s) 299, 438, 789, 1130, 1283
SatI GCNGC 3 cut(s) 111, 263, 666
Sau3AI GATC 4 cut(s) 214, 418, 1108, 1231
Sau96I GGNCC 1 cut(s) 876
SchI GAGTC 3 cut(s) 452, 563, 1177
ScrFI CCNGG 1 cut(s) 541
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 1235
Sfr274I CTCGAG 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 4 cut(s) 58, 689, 776, 893
SmoI CTYRAG 4 cut(s) 58, 689, 776, 893
Sse9I AATT 9 cut(s) 331, 372, 837, 998, 1075, 1098, 1131, 1139, 1280
SsiI CCGC 3 cut(s) 108, 111, 1204
SspMI CTAG 3 cut(s) 189, 254, 407
StyD4I CCNGG 1 cut(s) 539
StyI CCWWGG 1 cut(s) 1197
TaaI ACNGT 2 cut(s) 7, 469
TaiI ACGT 2 cut(s) 449, 968
TaqI TCGA 5 cut(s) 37, 59, 239, 357, 1278
TaqII GACCGA 1 cut(s) 842
TasI AATT 9 cut(s) 331, 372, 837, 998, 1075, 1098, 1131, 1139, 1280
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 6 cut(s) 236, 326, 560, 650, 960, 1182
Tru1I TTAA 5 cut(s) 299, 438, 789, 1130, 1283
Tru9I TTAA 5 cut(s) 299, 438, 789, 1130, 1283
TseFI GTSAC 1 cut(s) 823
TseI GCWGC 2 cut(s) 262, 665
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 2 cut(s) 72, 969
TspGWI ACGGA 3 cut(s) 34, 1181, 1229
Van91I CCANNNNNTGG 1 cut(s) 598
XapI RAATTY 1 cut(s) 998
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 559
XspI CTAG 3 cut(s) 189, 254, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.