RchiOBHm_Chr5g0020641

phenylalanine--tRNA ligase, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
14904532 .. 14909513
4982 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30071

Sequence Viewer

Length: 1431 bp
ATGGGCTATTTAAGAATCCCTCCTCAGTCCACTAACAATTCAACAAAAAAAAAAAAAAGCACAAAGAAACAAAAAATCAGAGTGAAGAGGAAAATCCAGACTAGAGACGCCAAACTCTTTTCAGTCCCAACGAGAATGGCAACGGCTTTCTCTTTTGCCCAAACTGTTCTCTTCTCCAAAACCTCACTCTCTCTCCGCACCAATGCCCTCAGAAGCTTAACCTTCTGCCTACCTTTCTCTTCTTCTTCTGCAGCTCTTGCCTCTGATAAGCCTCACAGCAAAAAATGGAGGCAGCCAGTGACTTCGGCGCTGGAGCTCGGCGGCGTCAAGATTGCTAAAGATGATGTGTTGAGGGATGACCCCACAAACAATGTTCCGGATACAATTTTTGCAAAGCTTGGAATGCAACTGCATAGAAGAGATCAGCACCCACTTGGAATTCTGAAGAATGCTATATATGAATACTTTGACACCAATCACTCAAACAAGTTTGATAAGTTCGATGATCTTTGCCCACTTGTATCTGTTAAGGAGAATTTTGATGATGTATTAGTTCCTGCTGATCACGTGAGTCGAAGTTATAATGATACATACTATGTGGACTCTCAAACAGTTTTGAGGTGCCATACAAGTGCTCATCAGGCAGAGTTATTGAGAAGAGGACATACTCATTTCCTTGTAACTGGAGATGTGTACCGTAGGGATTCCATCGACTCTACACATTACCCTGTGTTCCATCAGATGGAAGGGGTCCGTGTTTTTTCTCCAGAAGATTGGGCAGCATCTGGGGCAGATGCAACATCTTATGTAGCTGAGGACTTGAAGAAATGCCTTGAGGGCTTGGCACGCCACCTATTTGGTGCTGTGGAGATGCGCTGGGTTGATACATACTTTCCATTTACCAATCCATCATTTGAACTTGAGATTTTCTTTCAGGAAAAGTGGTTGGAGGTTTTGGGTTGCGGAGTAACAGAACAAGAAATCTTGAAGAGAAGTGGCAAAACAAACAATGTTGCTTGGGCTTTCGGACTTGGATTGGAGCGGCTGGCAATGGTTCTATTTGAAATCCCTGATATTCGCCTTTTCTGGTCAACTGATGAGAGGTTTACCTCGCAGTTTTTGAAAGGGCAGCTGGGAGTCAAGTTCAAGCCATATTCGAAGTATCCTCCGTGTTACAAAGATGTTAGTTTTTGGATCAGTGAATCTTTCACTGAAAACAATTTATGTGAAGTTGTTAGAGAGGTTGCCGGTGATCTTGCTGAGGAGGTGCAATTGATAGACAATTTCACAAACAAGAAAGGAATGACCAGTCACTGTTACAGGATTGCATATAGGTCCATGGAACGGTCACTTACAGACGAGGAGATCAATAAGTTGCAGGGTACTGTAAGAGAGTTGGTTGAGAGCAAGCTGAAGGTGGTCTTGAGATGA

Protein Analysis

476

Amino Acids

54.54

Weight (kDa)

8.79

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2d PF01409 141 - 373 7.6e-49 tRNA synthetases class II core domain (F)
FDX-ACB PF03147 386 - 476 1.6e-21 Ferredoxin-fold anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 621
AccB7I CCANNNNNTGG 1 cut(s) 742
AccBSI CCGCTC 1 cut(s) 1042
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 4 cut(s) 196, 321, 963, 1042
AclWI GGATC 1 cut(s) 1202
AcsI RAATTY 2 cut(s) 438, 535
AcuI CTGAAG 1 cut(s) 464
AcvI CACGTG 1 cut(s) 568
AcyI GRCGYC 2 cut(s) 108, 324
AfaI GTAC 2 cut(s) 695, 1384
AfiI CCNNNNNNNGG 2 cut(s) 742, 1344
AgsI TTSAA 7 cut(s) 42, 823, 917, 988, 1064, 1123, 1147
AluBI AGCT 7 cut(s) 216, 254, 316, 397, 812, 1132, 1411
AluI AGCT 7 cut(s) 216, 254, 316, 397, 812, 1132, 1411
Alw21I GWGCWC 2 cut(s) 318, 637
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 1202
AlwNI CAGNNNCTG 2 cut(s) 785, 1314
Aor13HI TCCGGA 1 cut(s) 376
ApeKI GCWGC 4 cut(s) 251, 292, 779, 1129
ApoI RAATTY 2 cut(s) 438, 535
AspLEI GCGC 2 cut(s) 310, 876
AspS9I GGNCC 2 cut(s) 751, 1335
AsuHPI GGTGA 1 cut(s) 1262
AsuII TTCGAA 1 cut(s) 1157
AvaII GGWCC 2 cut(s) 751, 1335
BanI GGYRCC 1 cut(s) 621
BanII GRGCYC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 649, 681
BbrPI CACGTG 1 cut(s) 568
Bbv12I GWGCWC 2 cut(s) 318, 637
BbvCI CCTCAGC 2 cut(s) 813, 1260
BbvI GCAGC 4 cut(s) 263, 304, 791, 1141
BccI CCATC 4 cut(s) 716, 736, 744, 916
BceAI ACGGC 1 cut(s) 159
BciVI GTATCC 2 cut(s) 373, 1173
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 311
BfuI GTATCC 2 cut(s) 373, 1173
BglI GCCNNNNNGGC 1 cut(s) 837
BisI GCNGC 6 cut(s) 252, 293, 322, 780, 1043, 1130
BlsI GCNGC 6 cut(s) 253, 294, 323, 781, 1044, 1131
Bme18I GGWCC 2 cut(s) 751, 1335
BmgT120I GGNCC 2 cut(s) 751, 1335
BmiI GGNNCC 2 cut(s) 623, 752
BmsI GCATC 3 cut(s) 784, 791, 861
BpmI CTGGAG 3 cut(s) 332, 705, 750
Bpu10I CCTNAGC 2 cut(s) 813, 1260
Bpu14I TTCGAA 1 cut(s) 1157
BpuEI CTTGAG 2 cut(s) 854, 941
BsaAI YACGTR 1 cut(s) 568
BsaHI GRCGYC 2 cut(s) 108, 324
BsaJI CCNNGG 1 cut(s) 1338
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 742, 1344
Bse118I RCCGGY 1 cut(s) 1247
Bse1I ACTGG 3 cut(s) 296, 688, 1308
Bse3DI GCAATG 1 cut(s) 1056
BseAI TCCGGA 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 1338
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 742, 1344
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 4 cut(s) 38, 223, 804, 1251
BseNI ACTGG 3 cut(s) 296, 688, 1308
BseRI GAGGAG 3 cut(s) 12, 1277, 1376
BseXI GCAGC 4 cut(s) 263, 304, 791, 1141
BseYI CCCAGC 2 cut(s) 876, 1132
BshNI GGYRCC 1 cut(s) 621
BsiHKAI GWGCWC 2 cut(s) 318, 637
BsiSI CCGG 2 cut(s) 377, 1248
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 742, 1344
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 2 cut(s) 408, 454
Bsp119I TTCGAA 1 cut(s) 1157
Bsp1286I GDGCHC 2 cut(s) 318, 637
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 6 cut(s) 421, 505, 562, 1194, 1252, 1365
Bsp19I CCATGG 1 cut(s) 1338
BspACI CCGC 4 cut(s) 196, 321, 963, 1042
BspCNI CTCAG 4 cut(s) 37, 222, 805, 1252
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 623, 752
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 1 cut(s) 1202
BspT104I TTCGAA 1 cut(s) 1157
BspT107I GGYRCC 1 cut(s) 621
BsrBI CCGCTC 1 cut(s) 1042
BsrDI GCAATG 1 cut(s) 1056
BsrFI RCCGGY 1 cut(s) 1247
BsrI ACTGG 3 cut(s) 296, 688, 1308
BssAI RCCGGY 1 cut(s) 1247
BssECI CCNNGG 1 cut(s) 1338
BssMI GATC 6 cut(s) 421, 505, 562, 1194, 1252, 1365
BssNI GRCGYC 2 cut(s) 108, 324
BssT1I CCWWGG 1 cut(s) 1338
Bst4CI ACNGT 6 cut(s) 166, 613, 698, 1316, 1347, 1387
Bst6I CTCTTC 6 cut(s) 80, 176, 244, 412, 652, 983
BstACI GRCGYC 2 cut(s) 108, 324
BstAPI GCANNNNNTGC 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 568
BstBI TTCGAA 1 cut(s) 1157
BstC8I GCNNGC 3 cut(s) 847, 1047, 1409
BstDEI CTNAG 4 cut(s) 24, 209, 813, 1260
BstDSI CCRYGG 1 cut(s) 1338
BstF5I GGATG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 2 cut(s) 310, 876
BstKTI GATC 6 cut(s) 424, 508, 565, 1197, 1255, 1368
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 6 cut(s) 421, 505, 562, 1194, 1252, 1365
BstMWI GCNNNNNNNGC 6 cut(s) 257, 403, 641, 788, 837, 846
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 263, 304, 791, 1141
BstXI CCANNNNNNTGG 2 cut(s) 774, 857
BsuI GTATCC 2 cut(s) 373, 1173
BtgI CCRYGG 1 cut(s) 1338
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 4 cut(s) 303, 1204, 1209, 1312
Cac8I GCNNGC 3 cut(s) 847, 1047, 1409
CaiI CAGNNNCTG 2 cut(s) 785, 1314
CfoI GCGC 2 cut(s) 310, 876
Cfr10I RCCGGY 1 cut(s) 1247
Cfr13I GGNCC 2 cut(s) 751, 1335
CseI GACGC 2 cut(s) 116, 313
Csp6I GTAC 2 cut(s) 694, 1383
CviAII CATG 1 cut(s) 1339
CviQI GTAC 2 cut(s) 694, 1383
DdeI CTNAG 4 cut(s) 24, 209, 813, 1260
DpnI GATC 6 cut(s) 423, 507, 564, 1196, 1254, 1367
DpnII GATC 6 cut(s) 421, 505, 562, 1194, 1252, 1365
Eam1104I CTCTTC 6 cut(s) 80, 176, 244, 412, 652, 983
EarI CTCTTC 6 cut(s) 80, 176, 244, 412, 652, 983
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 1338
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 2 cut(s) 751, 1335
Eco53kI GAGCTC 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 464
Eco72I CACGTG 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 1338
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 1338
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 1342
FalI AAGNNNNNCTT 1 cut(s) 1406
FaqI GGGAC 1 cut(s) 110
FatI CATG 1 cut(s) 1338
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 6 cut(s) 252, 293, 322, 780, 1043, 1130
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 6 cut(s) 252, 293, 322, 780, 1043, 1130
FspBI CTAG 1 cut(s) 102
GlaI GCGC 2 cut(s) 309, 875
GluI GCNGC 6 cut(s) 252, 293, 322, 780, 1043, 1130
GsaI CCCAGC 2 cut(s) 880, 1136
GsuI CTGGAG 3 cut(s) 332, 705, 750
HaeII RGCGCY 1 cut(s) 311
HapII CCGG 2 cut(s) 377, 1248
HgaI GACGC 2 cut(s) 116, 313
HhaI GCGC 2 cut(s) 310, 876
Hin1I GRCGYC 2 cut(s) 108, 324
Hin1II CATG 1 cut(s) 1342
Hin6I GCGC 2 cut(s) 308, 874
HinP1I GCGC 2 cut(s) 308, 874
HincII GTYRAC 1 cut(s) 1092
HindII GTYRAC 1 cut(s) 1092
HindIII AAGCTT 2 cut(s) 214, 395
HinfI GANTC 7 cut(s) 15, 571, 602, 704, 713, 1137, 1202
HpaII CCGG 2 cut(s) 377, 1248
HphI GGTGA 1 cut(s) 1262
Hpy166II GTNNAC 5 cut(s) 30, 601, 694, 1092, 1107
Hpy188I TCNGA 6 cut(s) 80, 212, 265, 444, 741, 1028
Hpy188III TCNNGA 7 cut(s) 97, 328, 377, 767, 935, 985, 1423
Hpy8I GTNNAC 5 cut(s) 30, 601, 694, 1092, 1107
HpyAV CCTTC 3 cut(s) 232, 740, 1408
HpyCH4III ACNGT 6 cut(s) 166, 613, 698, 1316, 1347, 1387
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 8 cut(s) 251, 392, 406, 412, 797, 1270, 1328, 1378
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 403, 641, 788, 837, 846
HpyF3I CTNAG 4 cut(s) 24, 209, 813, 1260
HpySE526I ACGT 1 cut(s) 567
Hsp92I GRCGYC 2 cut(s) 108, 324
Hsp92II CATG 1 cut(s) 1342
HspAI GCGC 2 cut(s) 308, 874
Kpn2I TCCGGA 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 6 cut(s) 421, 505, 562, 1194, 1252, 1365
LmnI GCTCC 2 cut(s) 313, 1039
Lsp1109I GCAGC 4 cut(s) 263, 304, 791, 1141
LweI GCATC 3 cut(s) 784, 791, 861
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 7 cut(s) 298, 679, 967, 1172, 1310, 1316, 1347
MalI GATC 6 cut(s) 423, 507, 564, 1196, 1254, 1367
MbiI CCGCTC 1 cut(s) 1042
MboI GATC 6 cut(s) 421, 505, 562, 1194, 1252, 1365
MfeI CAATTG 1 cut(s) 1271
MhlI GDGCHC 2 cut(s) 318, 637
MluCI AATT 7 cut(s) 37, 384, 438, 535, 1219, 1271, 1282
MlyI GAGTC 4 cut(s) 580, 596, 707, 1146
MmeI TCCRAC 1 cut(s) 927
MroI TCCGGA 1 cut(s) 376
MseI TTAA 3 cut(s) 11, 218, 528
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 1132
MspI CCGG 2 cut(s) 377, 1248
MunI CAATTG 1 cut(s) 1271
Mva1269I GAATGC 2 cut(s) 408, 454
MwoI GCNNNNNNNGC 6 cut(s) 257, 403, 641, 788, 837, 846
NcoI CCATGG 1 cut(s) 1338
NdeII GATC 6 cut(s) 421, 505, 562, 1194, 1252, 1365
NlaIII CATG 1 cut(s) 1342
NlaIV GGNNCC 2 cut(s) 623, 752
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 3 cut(s) 298, 1310, 1347
NspV TTCGAA 1 cut(s) 1157
PctI GAATGC 2 cut(s) 408, 454
PfeI GAWTC 3 cut(s) 15, 704, 1202
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 6 cut(s) 253, 294, 323, 781, 1044, 1131
PleI GAGTC 4 cut(s) 579, 596, 707, 1145
PmaCI CACGTG 1 cut(s) 568
PmlI CACGTG 1 cut(s) 568
PpsI GAGTC 4 cut(s) 579, 596, 707, 1145
Ppu21I YACGTR 1 cut(s) 568
PsiI TTATAA 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 318
PspCI CACGTG 1 cut(s) 568
PspFI CCCAGC 2 cut(s) 876, 1132
PspN4I GGNNCC 2 cut(s) 623, 752
PspPI GGNCC 2 cut(s) 751, 1335
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 2 cut(s) 785, 1314
PvuII CAGCTG 1 cut(s) 1132
RsaI GTAC 2 cut(s) 695, 1384
RsaNI GTAC 2 cut(s) 694, 1383
RseI CAYNNNNRTG 1 cut(s) 630
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 3 cut(s) 11, 218, 528
SatI GCNGC 6 cut(s) 252, 293, 322, 780, 1043, 1130
Sau3AI GATC 6 cut(s) 421, 505, 562, 1194, 1252, 1365
Sau96I GGNCC 2 cut(s) 751, 1335
SchI GAGTC 4 cut(s) 580, 596, 707, 1146
SduI GDGCHC 2 cut(s) 318, 637
SfaNI GCATC 3 cut(s) 784, 791, 861
SfcI CTRYAG 1 cut(s) 249
SfuI TTCGAA 1 cut(s) 1157
SinI GGWCC 2 cut(s) 751, 1335
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 3 cut(s) 833, 920, 1423
SmoI CTYRAG 3 cut(s) 833, 920, 1423
Sse9I AATT 7 cut(s) 37, 384, 438, 535, 1219, 1271, 1282
SsiI CCGC 4 cut(s) 196, 321, 963, 1042
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 318
StyI CCWWGG 1 cut(s) 1338
TaaI ACNGT 6 cut(s) 166, 613, 698, 1316, 1347, 1387
TaiI ACGT 1 cut(s) 570
TaqI TCGA 4 cut(s) 501, 574, 711, 1157
TasI AATT 7 cut(s) 37, 384, 438, 535, 1219, 1271, 1282
TauI GCSGC 2 cut(s) 324, 1045
TfiI GAWTC 3 cut(s) 15, 704, 1202
Tru1I TTAA 3 cut(s) 11, 218, 528
Tru9I TTAA 3 cut(s) 11, 218, 528
TscAI CASTG 4 cut(s) 303, 1204, 1216, 1319
TseFI GTSAC 3 cut(s) 298, 1310, 1347
TseI GCWGC 4 cut(s) 251, 292, 779, 1129
Tsp45I GTSAC 3 cut(s) 298, 1310, 1347
TspDTI ATGAA 1 cut(s) 474
TspGWI ACGGA 2 cut(s) 743, 1158
TspRI CASTG 4 cut(s) 303, 1204, 1216, 1319
Van91I CCANNNNNTGG 1 cut(s) 742
VpaK11BI GGWCC 2 cut(s) 751, 1335
XapI RAATTY 2 cut(s) 438, 535
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.