Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004163

Physical Location & Seq

Genomic Coordinates Forward (+)

7568266 .. 7573549

Gene Structure 5284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12680.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCAACTGCCTTCTCTATTGCCCAAACTGCTCTCTTCTCCAAAACCTCTCTCTCTCTCCGCACCAATGCCCTCAGAAGCTTCACCTTCTGCCTACCCTTCTCTTCTTCGGCAGCTCTCGCTTCTGATAAGCCCCACAGCAAGAAATGGAGACAGCCAGTGACCTCGGCGCTGGAGCTTGGCGGCGTCAAGATTGCTAAAGATGATGTGTTGAGGGATGACCCCACAAACAATGTTCCGGATACGATTTTTGCAAAGCTTGGAATGCAACTGCATAGAAGAGATCAGCACCCGCTTGGAATTCTGAAGAATGCTATATATGATTACTTTGACACTAATTACTCGAGCAAGTTTGACAAGTTTGATGATCTTTGCCCACTTGTATCTGTTAAGGAGAATTTTGATGATGTATTGGTTCCTGCTGATCATGTGAGTCGAAGTTATAATGATACATACTATGTGGACTCTCAAACAGTTTTGAGGTGCCATACAAGTGCCCATCAGGCAGAGTTATTGACAAGAGGACACACTCATTTCCTTGTAACCGGAGATGTGTACCGTAGGGATTCCATCGACTCTACACATTACCCGGTGTTCCATCAGATGGAAGGAGTTCGTGTTTTTTCTCCAGAAGATTGGGCGGCATCCGAGACAGATGCAACATCTTATGTAGCTGAGGACTTGAAGAAATGTCTTGAGGGATTGGCACGCCATCTATTTGGTGATGTGGAGATGCGCTGGGTTGATACATATTTTCCATTTACCGATCCATCTTTTGAACTTGAGATCTTCTTTCAGGAAAAGTGGTTGGAGGTTTTGGGTTGTGGAGTAACAGAACAAGAAATATTGAAGAGAAGTGGCAAAACAGACAATGTTGCTTGGGCTTTCGGACTGGGACTGGAGCGGCTGGCAATGGTTCTATTTGACATCCCTGATATTCGCCTTTTCTGGTCAACTGATGAGAGGTTTACCTCCCAGTTTTTGAAGGGGCAGCTGGGAGTCAAGTTCAAGCCATATTCGAAGTATCCTCCATGTTACAAAGATGTCAGTTTTTGGATCAATGAATCTTTCACCGAAAACAATTTATGTGAAGTTGTTAGAGAGGTTGCTGGTGATCTTGCTGAGGAGGTGCAATTGATAGACAACTTCACAAACAAGAAAGGAATGACCAGCCATTGTTACAGGATCGCTTATAGGTCCATGGAACGGTCACTTACAGATGATGAAATCAATAAGTTGCAGGGTGCTGTACGAGAGTTGGTTGAGAGCAAGTTGAAGGTGGTGTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

431

Amino Acids

49.21

Weight (kDa)

5.53

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2d	PF01409	95 - 327	8.8e-49	tRNA synthetases class II core domain (F)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58140
fragaria_vesca	FvH4_3g12680 FvH4_3g12680 FvH4_3g12680
malus_domestica	MD05G1248600.v1.1 MD10G1229100.v1.1
prunus_persica	Prupe.4G115500_v2.0.a1
pyrus_communis	pycom05g22530 pycom10g19270
rosa_chinensis	RchiOBHm_Chr3g0486261 RchiOBHm_Chr5g0020641
rosa_laevigata	RLG00000023089 RLG00000032549
rosa_multiflora	Rmu_sc0001857.1_g000018 Rmu_sc0005607.1_g000020 Rmu_sc0005842.1_g000003 Rmu_sc0007661.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057630 Rroxscaffold_6G00395930
rosa_rugosa	Rorug03G0224300 Rorug03G0224400 Rorug03G0224500 Rorug05G0062200
rosa_samantha	Rh3AG274300 Rh3BG309600 Rh3CG308800 Rh5AG151900 Rh5BG151600 Rh5CG162900 Rh5DG150800
rosa_wichuraiana	Rw0G022550 Rw3G024320 Rw5G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccBSI	CCGCTC	1 cut(s)	904
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	5 cut(s)	61, 183, 293, 641, 904
AclWI	GGATC	3 cut(s)	761, 1064, 1193
AcsI	RAATTY	2 cut(s)	300, 397
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	557, 1251
AfiI	CCNNNNNNNGG	2 cut(s)	604, 1206
AgsI	TTSAA	6 cut(s)	685, 779, 850, 985, 1009, 1276
AluBI	AGCT	6 cut(s)	81, 116, 178, 259, 674, 994
AluI	AGCT	6 cut(s)	81, 116, 178, 259, 674, 994
Alw26I	GTCTC	2 cut(s)	145, 644
AlwI	GGATC	3 cut(s)	761, 1064, 1193
Ama87I	CYCGRG	1 cut(s)	343
Aor13HI	TCCGGA	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	113, 991
ApoI	RAATTY	2 cut(s)	300, 397
Asp700I	GAANNNNTTC	1 cut(s)	612
AspLEI	GCGC	2 cut(s)	172, 738
AspS9I	GGNCC	1 cut(s)	1197
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	4 cut(s)	76, 734, 1063, 1124
AsuII	TTCGAA	1 cut(s)	1019
AvaI	CYCGRG	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	1197
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	483
BbvCI	CCTCAGC	2 cut(s)	675, 1122
BbvI	GCAGC	2 cut(s)	125, 1003
BccI	CCATC	6 cut(s)	507, 578, 598, 606, 720, 778
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BciVI	GTATCC	2 cut(s)	235, 1035
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	2 cut(s)	145, 644
BfoI	RGCGCY	1 cut(s)	173
BfuI	GTATCC	2 cut(s)	235, 1035
BglI	GCCNNNNNGGC	1 cut(s)	503
BglII	AGATCT	1 cut(s)	786
BisI	GCNGC	5 cut(s)	114, 184, 642, 905, 992
BlsI	GCNGC	5 cut(s)	115, 185, 643, 906, 993
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	1 cut(s)	1197
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	1197
BmiI	GGNNCC	2 cut(s)	417, 485
BmrFI	CCNGG	1 cut(s)	590
BmrI	ACTGGG	2 cut(s)	902, 970
BmsI	GCATC	3 cut(s)	646, 653, 723
BmuI	ACTGGG	2 cut(s)	902, 970
BpmI	CTGGAG	3 cut(s)	194, 612, 920
Bpu10I	CCTNAGC	2 cut(s)	675, 1122
Bpu14I	TTCGAA	1 cut(s)	1019
BpuEI	CTTGAG	2 cut(s)	716, 803
BpuMI	CCSGG	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	165, 1200
BsaWI	WCCGGW	2 cut(s)	238, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 1206
Bse1I	ACTGG	4 cut(s)	158, 897, 903, 976
Bse3DI	GCAATG	1 cut(s)	918
BseAI	TCCGGA	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	165, 1200
BseGI	GGATG	3 cut(s)	223, 644, 927
BseLI	CCNNNNNNNGG	2 cut(s)	604, 1206
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	3 cut(s)	88, 666, 1113
BseNI	ACTGG	4 cut(s)	158, 897, 903, 976
BseRI	GAGGAG	1 cut(s)	1139
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	2 cut(s)	125, 1003
BseYI	CCCAGC	2 cut(s)	738, 994
BshNI	GGYRCC	1 cut(s)	483
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	3 cut(s)	239, 546, 590
BslFI	GGGAC	1 cut(s)	909
BslI	CCNNNNNNNGG	2 cut(s)	604, 1206
BsmAI	GTCTC	2 cut(s)	145, 644
BsmFI	GGGAC	1 cut(s)	909
BsmI	GAATGC	2 cut(s)	270, 316
BsoBI	CYCGRG	1 cut(s)	343
Bsp119I	TTCGAA	1 cut(s)	1019
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	8 cut(s)	283, 367, 424, 766, 786, 1056, 1114, 1185
Bsp19I	CCATGG	1 cut(s)	1200
BspACI	CCGC	5 cut(s)	61, 183, 293, 641, 904
BspCNI	CTCAG	3 cut(s)	87, 667, 1114
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	417, 485
BspPI	GGATC	3 cut(s)	761, 1064, 1193
BspT104I	TTCGAA	1 cut(s)	1019
BspT107I	GGYRCC	1 cut(s)	483
BsrBI	CCGCTC	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	918
BsrI	ACTGG	4 cut(s)	158, 897, 903, 976
BssECI	CCNNGG	2 cut(s)	165, 1200
BssMI	GATC	8 cut(s)	283, 367, 424, 766, 786, 1056, 1114, 1185
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	1200
Bst4CI	ACNGT	3 cut(s)	475, 560, 1209
Bst6I	CTCTTC	4 cut(s)	41, 109, 274, 845
BstACI	GRCGYC	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	1019
BstC8I	GCNNGC	2 cut(s)	709, 909
BstDEI	CTNAG	3 cut(s)	74, 675, 1122
BstDSI	CCRYGG	1 cut(s)	1200
BstF5I	GGATG	3 cut(s)	223, 644, 927
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	172, 738
BstKTI	GATC	8 cut(s)	286, 370, 427, 769, 789, 1059, 1117, 1188
BstMAI	GTCTC	2 cut(s)	145, 644
BstMBI	GATC	8 cut(s)	283, 367, 424, 766, 786, 1056, 1114, 1185
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 119, 265, 503
BstSCI	CCNGG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	2 cut(s)	125, 1003
BstX2I	RGATCY	1 cut(s)	786
BstXI	CCANNNNNNTGG	2 cut(s)	636, 719
BstYI	RGATCY	1 cut(s)	786
BsuI	GTATCC	2 cut(s)	235, 1035
BtgI	CCRYGG	1 cut(s)	1200
BtsCI	GGATG	3 cut(s)	223, 644, 927
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	2 cut(s)	709, 909
CfoI	GCGC	2 cut(s)	172, 738
Cfr13I	GGNCC	1 cut(s)	1197
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	556, 1250
CviAII	CATG	3 cut(s)	428, 1032, 1201
CviQI	GTAC	2 cut(s)	556, 1250
DdeI	CTNAG	3 cut(s)	74, 675, 1122
DpnI	GATC	8 cut(s)	285, 369, 426, 768, 788, 1058, 1116, 1187
DpnII	GATC	8 cut(s)	283, 367, 424, 766, 786, 1056, 1114, 1185
Eam1104I	CTCTTC	4 cut(s)	41, 109, 274, 845
EarI	CTCTTC	4 cut(s)	41, 109, 274, 845
Eco130I	CCWWGG	1 cut(s)	1200
Eco47I	GGWCC	1 cut(s)	1197
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	1200
ErhI	CCWWGG	1 cut(s)	1200
FaeI	CATG	3 cut(s)	431, 1035, 1204
FaqI	GGGAC	1 cut(s)	909
FatI	CATG	3 cut(s)	427, 1031, 1200
FauI	CCCGC	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	5 cut(s)	114, 184, 642, 905, 992
FokI	GGATG	3 cut(s)	230, 631, 914
Fsp4HI	GCNGC	5 cut(s)	114, 184, 642, 905, 992
GlaI	GCGC	2 cut(s)	171, 737
GluI	GCNGC	5 cut(s)	114, 184, 642, 905, 992
GsaI	CCCAGC	2 cut(s)	742, 998
GsuI	CTGGAG	3 cut(s)	194, 612, 920
HaeII	RGCGCY	1 cut(s)	173
HapII	CCGG	3 cut(s)	239, 546, 590
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	2 cut(s)	172, 738
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	431, 1035, 1204
Hin6I	GCGC	2 cut(s)	170, 736
HinP1I	GCGC	2 cut(s)	170, 736
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	2 cut(s)	79, 257
HinfI	GANTC	6 cut(s)	433, 464, 566, 575, 999, 1064
HpaII	CCGG	3 cut(s)	239, 546, 590
HphI	GGTGA	4 cut(s)	76, 734, 1063, 1124
Hpy166II	GTNNAC	4 cut(s)	463, 556, 954, 969
Hpy188I	TCNGA	6 cut(s)	77, 127, 306, 603, 649, 890
Hpy188III	TCNNGA	5 cut(s)	190, 239, 629, 695, 797
Hpy8I	GTNNAC	4 cut(s)	463, 556, 954, 969
HpyAV	CCTTC	6 cut(s)	22, 97, 109, 602, 979, 1270
HpyCH4III	ACNGT	3 cut(s)	475, 560, 1209
HpyCH4V	TGCA	6 cut(s)	254, 268, 274, 659, 1132, 1240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 119, 265, 503
HpyF3I	CTNAG	3 cut(s)	74, 675, 1122
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	431, 1035, 1204
HspAI	GCGC	2 cut(s)	170, 736
Kpn2I	TCCGGA	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	8 cut(s)	283, 367, 424, 766, 786, 1056, 1114, 1185
LmnI	GCTCC	2 cut(s)	175, 901
Lsp1109I	GCAGC	2 cut(s)	125, 1003
LweI	GCATC	3 cut(s)	646, 653, 723
MaeIII	GTNAC	6 cut(s)	160, 541, 829, 1034, 1178, 1209
MalI	GATC	8 cut(s)	285, 369, 426, 768, 788, 1058, 1116, 1187
MbiI	CCGCTC	1 cut(s)	904
MboI	GATC	8 cut(s)	283, 367, 424, 766, 786, 1056, 1114, 1185
MboII	GAAGA	9 cut(s)	28, 96, 99, 291, 319, 644, 697, 781, 862
MfeI	CAATTG	1 cut(s)	1133
MflI	RGATCY	1 cut(s)	786
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	5 cut(s)	300, 337, 397, 1081, 1133
MlyI	GAGTC	4 cut(s)	442, 458, 569, 1008
MmeI	TCCRAC	1 cut(s)	789
MroI	TCCGGA	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	994
MspI	CCGG	3 cut(s)	239, 546, 590
MspR9I	CCNGG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	1133
Mva1269I	GAATGC	2 cut(s)	270, 316
MwoI	GCNNNNNNNGC	4 cut(s)	29, 119, 265, 503
NciI	CCSGG	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	1200
NdeII	GATC	8 cut(s)	283, 367, 424, 766, 786, 1056, 1114, 1185
NlaIII	CATG	3 cut(s)	431, 1035, 1204
NlaIV	GGNNCC	2 cut(s)	417, 485
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	160, 1209
NspV	TTCGAA	1 cut(s)	1019
PaeR7I	CTCGAG	1 cut(s)	343
PctI	GAATGC	2 cut(s)	270, 316
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	2 cut(s)	566, 1064
PflMI	CCANNNNNTGG	1 cut(s)	604
PkrI	GCNGC	5 cut(s)	115, 185, 643, 906, 993
PleI	GAGTC	4 cut(s)	441, 458, 569, 1007
PpsI	GAGTC	4 cut(s)	441, 458, 569, 1007
PsiI	TTATAA	1 cut(s)	444
PspFI	CCCAGC	2 cut(s)	738, 994
PspN4I	GGNNCC	2 cut(s)	417, 485
PspPI	GGNCC	1 cut(s)	1197
PspXI	VCTCGAGB	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	786
PvuII	CAGCTG	1 cut(s)	994
RsaI	GTAC	2 cut(s)	557, 1251
RsaNI	GTAC	2 cut(s)	556, 1250
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	114, 184, 642, 905, 992
Sau3AI	GATC	8 cut(s)	283, 367, 424, 766, 786, 1056, 1114, 1185
Sau96I	GGNCC	1 cut(s)	1197
SchI	GAGTC	4 cut(s)	442, 458, 569, 1008
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	3 cut(s)	646, 653, 723
Sfr274I	CTCGAG	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	1019
SinI	GGWCC	1 cut(s)	1197
SlaI	CTCGAG	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	3 cut(s)	343, 695, 782
SmoI	CTYRAG	3 cut(s)	343, 695, 782
Sse9I	AATT	5 cut(s)	300, 337, 397, 1081, 1133
SsiI	CCGC	5 cut(s)	61, 183, 293, 641, 904
SspI	AATATT	1 cut(s)	846
StyD4I	CCNGG	1 cut(s)	588
StyI	CCWWGG	1 cut(s)	1200
TaaI	ACNGT	3 cut(s)	475, 560, 1209
TaqI	TCGA	4 cut(s)	344, 436, 573, 1019
TasI	AATT	5 cut(s)	300, 337, 397, 1081, 1133
TauI	GCSGC	3 cut(s)	186, 644, 907
TfiI	GAWTC	2 cut(s)	566, 1064
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	160, 1209
TseI	GCWGC	2 cut(s)	113, 991
Tsp45I	GTSAC	2 cut(s)	160, 1209
TspDTI	ATGAA	2 cut(s)	1077, 1239
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	1197
XapI	RAATTY	2 cut(s)	300, 397
XhoI	CTCGAG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.