Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005842.1

Orthogroup ID

OG0004163

Physical Location & Seq

Genomic Coordinates Forward (+)

6952 .. 11702

Gene Structure 4751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005842.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggcaacggccttctcttttgcccaagctgctctcttctccaaaaccccactctctcttcgcaccaatgccctcagaaccttaaccttctgcttacccttctcttcttcttctgcagctcttgcctctgacaagcctcgcagcaagaaatggaggcacccagtaacttcagcagcgctcgagctcggcggcgtcaagattgctagagatgatgtgttgagggatgaccctacaaacaatgttccggatacgatttttgcaaagctcggaatgcaactgcatagaagagaccagcacccacttggaattctcaagaatgctatctacgaatacttcgacaccaattactcgaacaagtttgataagttcgatgatctttgcccacttgtatctgttaaagagaattttgatgatgtattagttcctgctgatcatgtaagtcgaagctataatgatacatactatgtggactctcaaaccgttttgaggtgccatacaagtgctcatcaggcagagttattgagaaaaggacacactcatttccttgtaactggagatgtgtaccgcagggattccattgactctacacattaccctgtgttccatcagatggaaggcgtgcgtgttttttctccagaagattgggcagcgtctgggatagatgcaacatcttatgtagctgaggacttgaagaaatgtcttgagggtctggcacgccacctatttggtactgtggagatgcgctgggttgatacgtactttccatttaccaatccatcatttgaacttgagattttctttcagtttttgaaggggcagctgggagtcaagttcaagccatattcaaagtatcctccgtgttataaagatgttagtttttggatcagtgaatctttcaccgaaaacaatttatgtgaagttgttagagaggttgctggagatcttgctgaggaggtgcaattgatagacaatttcacaaacaagaaaggaatgaccagccactgttacaggattgcttataggtctatggagcgatcacttacagacgaggaagtaaataaattgcagggtactgtaagggagttggttgagagcaagttgaaggttatgttgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

372

Amino Acids

42.54

Weight (kDa)

6.32

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58140
fragaria_vesca	FvH4_3g12680 FvH4_3g12680 FvH4_3g12680
malus_domestica	MD05G1248600.v1.1 MD10G1229100.v1.1
prunus_persica	Prupe.4G115500_v2.0.a1
pyrus_communis	pycom05g22530 pycom10g19270
rosa_chinensis	RchiOBHm_Chr3g0486261 RchiOBHm_Chr5g0020641
rosa_laevigata	RLG00000023089 RLG00000032549
rosa_multiflora	Rmu_sc0001857.1_g000018 Rmu_sc0005607.1_g000020 Rmu_sc0005842.1_g000003 Rmu_sc0007661.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057630 Rroxscaffold_6G00395930
rosa_rugosa	Rorug03G0224300 Rorug03G0224400 Rorug03G0224500 Rorug05G0062200
rosa_samantha	Rh3AG274300 Rh3BG309600 Rh3CG308800 Rh5AG151900 Rh5BG151600 Rh5CG162900 Rh5DG150800
rosa_wichuraiana	Rw0G022550 Rw3G024320 Rw5G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
AccB1I	GGYRCC	2 cut(s)	156, 489
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	2 cut(s)	189, 565
AclWI	GGATC	1 cut(s)	890
AcsI	RAATTY	2 cut(s)	306, 403
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	4 cut(s)	563, 730, 758, 1072
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	486, 610
AgsI	TTSAA	6 cut(s)	691, 785, 811, 835, 846, 1102
AluBI	AGCT	7 cut(s)	29, 119, 184, 265, 447, 680, 820
AluI	AGCT	7 cut(s)	29, 119, 184, 265, 447, 680, 820
Alw21I	GWGCWC	2 cut(s)	186, 505
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	890
AlwNI	CAGNNNCTG	2 cut(s)	653, 1002
Ama87I	CYCGRG	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	244
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	6 cut(s)	29, 116, 141, 173, 647, 817
ApoI	RAATTY	2 cut(s)	306, 403
AspLEI	GCGC	2 cut(s)	178, 744
AsuHPI	GGTGA	1 cut(s)	889
AvaI	CYCGRG	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	156, 489
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	186, 505
BbvCI	CCTCAGC	2 cut(s)	681, 948
BbvI	GCAGC	6 cut(s)	16, 128, 153, 185, 659, 829
BccI	CCATC	3 cut(s)	604, 612, 784
BceAI	ACGGC	1 cut(s)	24
BciVI	GTATCC	2 cut(s)	241, 861
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	179
BfuI	GTATCC	2 cut(s)	241, 861
BglII	AGATCT	1 cut(s)	940
BisI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 818
BlsI	GCNGC	7 cut(s)	31, 118, 143, 175, 191, 649, 819
BmeT110I	CYCGRG	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	158, 491
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	652, 729
BmuI	ACTGGG	1 cut(s)	155
BpmI	CTGGAG	3 cut(s)	573, 618, 957
Bpu10I	CCTNAGC	2 cut(s)	681, 948
BpuEI	CTTGAG	3 cut(s)	296, 722, 809
BsaAI	YACGTR	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 610
Bse1I	ACTGG	2 cut(s)	161, 556
BseAI	TCCGGA	1 cut(s)	244
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	486, 610
BseMII	CTCAG	3 cut(s)	88, 672, 939
BseNI	ACTGG	2 cut(s)	161, 556
BseRI	GAGGAG	1 cut(s)	965
BseXI	GCAGC	6 cut(s)	16, 128, 153, 185, 659, 829
BseYI	CCCAGC	2 cut(s)	744, 820
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	156, 489
BsiHKAI	GWGCWC	2 cut(s)	186, 505
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	486, 610
BsmAI	GTCTC	1 cut(s)	282
BsmI	GAATGC	2 cut(s)	276, 322
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	186, 505
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	5 cut(s)	373, 430, 882, 940, 1034
BspACI	CCGC	2 cut(s)	189, 565
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	3 cut(s)	87, 673, 940
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	158, 491
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	1 cut(s)	890
BspT107I	GGYRCC	2 cut(s)	156, 489
BspTNI	GGTCTC	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	161, 556
BssMI	GATC	5 cut(s)	373, 430, 882, 940, 1034
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	4 cut(s)	481, 733, 1004, 1075
Bst6I	CTCTTC	4 cut(s)	41, 63, 109, 280
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	756
BstC8I	GCNNGC	2 cut(s)	620, 715
BstDEI	CTNAG	3 cut(s)	74, 681, 948
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	178, 744
BstKTI	GATC	5 cut(s)	376, 433, 885, 943, 1037
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	5 cut(s)	373, 430, 882, 940, 1034
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 122, 271, 509
BstSFI	CTRYAG	1 cut(s)	114
BstSNI	TACGTA	1 cut(s)	756
BstV1I	GCAGC	6 cut(s)	16, 128, 153, 185, 659, 829
BstX2I	RGATCY	1 cut(s)	940
BstXI	CCANNNNNNTGG	2 cut(s)	642, 725
BstYI	RGATCY	1 cut(s)	940
BsuI	GTATCC	2 cut(s)	241, 861
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	892, 1000
Cac8I	GCNNGC	2 cut(s)	620, 715
CaiI	CAGNNNCTG	2 cut(s)	653, 1002
CfoI	GCGC	2 cut(s)	178, 744
CseI	GACGC	2 cut(s)	181, 639
Csp6I	GTAC	4 cut(s)	562, 729, 757, 1071
CviAII	CATG	1 cut(s)	434
CviQI	GTAC	4 cut(s)	562, 729, 757, 1071
DdeI	CTNAG	3 cut(s)	74, 681, 948
DpnI	GATC	5 cut(s)	375, 432, 884, 942, 1036
DpnII	GATC	5 cut(s)	373, 430, 882, 940, 1034
Eam1104I	CTCTTC	4 cut(s)	41, 63, 109, 280
EarI	CTCTTC	4 cut(s)	41, 63, 109, 280
Ecl136II	GAGCTC	1 cut(s)	184
Eco105I	TACGTA	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	282
Eco47III	AGCGCT	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	1 cut(s)	437
FatI	CATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 818
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 818
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	177, 743
GluI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 818
GsaI	CCCAGC	2 cut(s)	748, 824
GsuI	CTGGAG	3 cut(s)	573, 618, 957
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	2 cut(s)	181, 639
HhaI	GCGC	2 cut(s)	178, 744
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	2 cut(s)	176, 742
HinP1I	GCGC	2 cut(s)	176, 742
HinfI	GANTC	5 cut(s)	470, 572, 581, 825, 890
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	889
Hpy166II	GTNNAC	2 cut(s)	469, 562
Hpy188I	TCNGA	4 cut(s)	77, 130, 269, 609
Hpy188III	TCNNGA	5 cut(s)	196, 245, 313, 635, 701
Hpy8I	GTNNAC	2 cut(s)	469, 562
HpyAV	CCTTC	6 cut(s)	22, 97, 109, 608, 805, 1096
HpyCH4III	ACNGT	4 cut(s)	481, 733, 1004, 1075
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	7 cut(s)	116, 260, 274, 280, 665, 958, 1066
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 122, 271, 509
HpyF3I	CTNAG	3 cut(s)	74, 681, 948
HpySE526I	ACGT	1 cut(s)	755
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	2 cut(s)	176, 742
Kpn2I	TCCGGA	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	373, 430, 882, 940, 1034
LmnI	GCTCC	1 cut(s)	1030
Lsp1109I	GCAGC	6 cut(s)	16, 128, 153, 185, 659, 829
LweI	GCATC	2 cut(s)	652, 729
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	3 cut(s)	163, 547, 1004
MalI	GATC	5 cut(s)	375, 432, 884, 942, 1036
MboI	GATC	5 cut(s)	373, 430, 882, 940, 1034
MboII	GAAGA	8 cut(s)	28, 50, 96, 99, 102, 297, 650, 703
MfeI	CAATTG	1 cut(s)	959
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	2 cut(s)	186, 505
MluCI	AATT	7 cut(s)	306, 343, 403, 907, 959, 970, 1061
MlyI	GAGTC	3 cut(s)	464, 575, 834
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	2 cut(s)	83, 396
MslI	CAYNNNNRTG	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	820
MspI	CCGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	959
Mva1269I	GAATGC	2 cut(s)	276, 322
MwoI	GCNNNNNNNGC	4 cut(s)	29, 122, 271, 509
NdeII	GATC	5 cut(s)	373, 430, 882, 940, 1034
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	2 cut(s)	158, 491
NmeAIII	GCCGAG	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	2 cut(s)	276, 322
PfeI	GAWTC	2 cut(s)	572, 890
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	7 cut(s)	31, 118, 143, 175, 191, 649, 819
PleI	GAGTC	3 cut(s)	464, 575, 833
PpsI	GAGTC	3 cut(s)	464, 575, 833
Ppu21I	YACGTR	1 cut(s)	756
PsiI	TTATAA	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	186
PspFI	CCCAGC	2 cut(s)	744, 820
PspN4I	GGNNCC	2 cut(s)	158, 491
PspXI	VCTCGAGB	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	2 cut(s)	653, 1002
PsuI	RGATCY	1 cut(s)	940
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	4 cut(s)	563, 730, 758, 1072
RsaNI	GTAC	4 cut(s)	562, 729, 757, 1071
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	83, 396
SatI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 818
Sau3AI	GATC	5 cut(s)	373, 430, 882, 940, 1034
SchI	GAGTC	3 cut(s)	464, 575, 834
SduI	GDGCHC	2 cut(s)	186, 505
SfaNI	GCATC	2 cut(s)	652, 729
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	4 cut(s)	179, 311, 701, 788
SmoI	CTYRAG	4 cut(s)	179, 311, 701, 788
SnaBI	TACGTA	1 cut(s)	756
Sse9I	AATT	7 cut(s)	306, 343, 403, 907, 959, 970, 1061
SsiI	CCGC	2 cut(s)	189, 565
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	481, 733, 1004, 1075
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	5 cut(s)	180, 336, 350, 369, 442
TasI	AATT	7 cut(s)	306, 343, 403, 907, 959, 970, 1061
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	572, 890
Tru1I	TTAA	2 cut(s)	83, 396
Tru9I	TTAA	2 cut(s)	83, 396
TscAI	CASTG	2 cut(s)	892, 1007
TseI	GCWGC	6 cut(s)	29, 116, 141, 173, 647, 817
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	2 cut(s)	892, 1007
Van91I	CCANNNNNTGG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	306, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	179
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.