Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004163

Physical Location & Seq

Genomic Coordinates Reverse (-)

22413794 .. 22417382

Gene Structure 3589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTACCGGATACAATTTTTGCAAAGCTTGGACTACAACTCCACAGAAGAGATCGAGCACCCACTTGGGATTTTGAAGAATGCAATATATGAGTATTTCGACACCAATTACTCAAATCAGTTCGATAAGTTTGATAATCTTTGCCCAATTGTCTCTGTGAAAGAGAATTTTGACAATGTTTTGGTTCCTGCTGATCATGTAAGTCGAAGTTATAATGATACGTACTATATTGACTCTCAAACCGTTTTGAGGTGTCATACAAGTGCTCATCAGGCAGAAATATTGAGAAGAGGACATACTCATTTCCTTGTAACAGGAGATGTGTACCGTAGGGATTCCATTGACTCAACGCATTACCCTGTGTTCCATCAGATGGAAGGTGTTCGTGTTTTTTCTCCACAAGATTGGGAGGCATCTGGGACAGATGGCACATCTTATGCCGCTGGAGATTTAAAGAAATGTCTAGAGGGTTTGGCACGCCACTTATTTGGTTCTGTGGAAATGCGCTGGGTTGATACATATTTCCCATTTACCAACCCATCATTTGAACTTGAGATATTTTTTCAGGAAAAATGGTTGGAGGTTTTGGGTTGTGGGGTGACAGAACAAGAAATATTGAGGAGAAGTGGCAAAACAGACAACGTTGCTTGGGCTTTTGGACTTGGACTGGAACGGCTGGCAATGGTTTTATTTGACATCCCTGATATTCGGCTTTTCTGGTCAACTGATGAGAGATTCACCTCTCAGTTTTTGAGTGGCCAGTTGGGAATCAAATTCAAGCCATTTTCCAAGTATCCTCCTTGTTACAAAGATGTCAGTTTTTGGATAAACGAGTCTTTCACCGAAAACAATTTATGTGAAGTTGTTAGAGAAGTTGCTGGAGATCTTGCAGAGGAGGTGCAATTGATAGACAATTTCACAAACAAGAAAGGGATGACCAGTCACTGCTACAGAATTGCATATCGATCCATGGAACGCTCGCTCACAGATGATGAAATTAATAAGTTGCAGTGGAATGTAAGAGAGTTGGTGCAGAGCAAGTTGAACGTCGTTCTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

354

Amino Acids

41.14

Weight (kDa)

5.15

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2d	PF01409	40 - 250	4.1e-49	tRNA synthetases class II core domain (F)
FDX-ACB	PF03147	263 - 353	2.4e-21	Ferredoxin-fold anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58140
fragaria_vesca	FvH4_3g12680 FvH4_3g12680 FvH4_3g12680
malus_domestica	MD05G1248600.v1.1 MD10G1229100.v1.1
prunus_persica	Prupe.4G115500_v2.0.a1
pyrus_communis	pycom05g22530 pycom10g19270
rosa_chinensis	RchiOBHm_Chr3g0486261 RchiOBHm_Chr5g0020641
rosa_laevigata	RLG00000023089 RLG00000032549
rosa_multiflora	Rmu_sc0001857.1_g000018 Rmu_sc0005607.1_g000020 Rmu_sc0005842.1_g000003 Rmu_sc0007661.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057630 Rroxscaffold_6G00395930
rosa_rugosa	Rorug03G0224300 Rorug03G0224400 Rorug03G0224500 Rorug05G0062200
rosa_samantha	Rh3AG274300 Rh3BG309600 Rh3CG308800 Rh5AG151900 Rh5BG151600 Rh5CG162900 Rh5DG150800
rosa_wichuraiana	Rw0G022550 Rw3G024320 Rw5G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	1 cut(s)	441
AclI	AACGTT	1 cut(s)	642
AclWI	GGATC	1 cut(s)	960
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	2 cut(s)	166, 773
AfaI	GTAC	3 cut(s)	5, 224, 326
AfiI	CCNNNNNNNGG	2 cut(s)	249, 373
AgsI	TTSAA	4 cut(s)	76, 548, 778, 1045
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw21I	GWGCWC	2 cut(s)	60, 268
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	960
AlwNI	CAGNNNCTG	1 cut(s)	945
AoxI	GGCC	1 cut(s)	757
ApoI	RAATTY	2 cut(s)	166, 773
AseI	ATTAAT	1 cut(s)	999
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	610, 730, 832
BalI	TGGCCA	1 cut(s)	759
BarI	GAAGNNNNNNTAC	2 cut(s)	280, 312
Bbv12I	GWGCWC	2 cut(s)	60, 268
BccI	CCATC	4 cut(s)	367, 375, 419, 547
BceAI	ACGGC	1 cut(s)	689
BciVI	GTATCC	2 cut(s)	3, 804
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	949
BfuI	GTATCC	2 cut(s)	3, 804
BglII	AGATCT	1 cut(s)	883
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	186
BmsI	GCATC	1 cut(s)	422
BpmI	CTGGAG	2 cut(s)	465, 900
BpuEI	CTTGAG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	964
BsaAI	YACGTR	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	969
BsaWI	WCCGGW	1 cut(s)	6
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 373
Bse1I	ACTGG	3 cut(s)	672, 760, 939
Bse3DI	GCAATG	1 cut(s)	687
BseCI	ATCGAT	1 cut(s)	964
BseDI	CCNNGG	1 cut(s)	969
BseGI	GGATG	2 cut(s)	696, 939
BseLI	CCNNNNNNNGG	2 cut(s)	249, 373
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	3 cut(s)	672, 760, 939
BseRI	GAGGAG	2 cut(s)	634, 908
BseYI	CCCAGC	1 cut(s)	507
BsgI	GTGCAG	1 cut(s)	1052
BshFI	GGCC	1 cut(s)	759
BshVI	ATCGAT	1 cut(s)	964
BsiHKAI	GWGCWC	2 cut(s)	60, 268
BsiSI	CCGG	1 cut(s)	7
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	249, 373
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	759
Bsp1286I	GDGCHC	2 cut(s)	60, 268
Bsp143I	GATC	4 cut(s)	51, 193, 883, 965
Bsp19I	CCATGG	1 cut(s)	969
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	759
BspCNI	CTCAG	1 cut(s)	757
BspDI	ATCGAT	1 cut(s)	964
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	960
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	3 cut(s)	672, 760, 939
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	4 cut(s)	51, 193, 883, 965
BssT1I	CCWWGG	1 cut(s)	969
Bst4CI	ACNGT	2 cut(s)	244, 329
Bst6I	CTCTTC	2 cut(s)	42, 283
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	478, 678, 980
BstDEI	CTNAG	2 cut(s)	744, 1055
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	2 cut(s)	696, 939
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	4 cut(s)	54, 196, 886, 968
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	4 cut(s)	51, 193, 883, 965
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	949
BstSNI	TACGTA	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	883
BstXI	CCANNNNNNTGG	2 cut(s)	405, 488
BstYI	RGATCY	1 cut(s)	883
Bsu15I	ATCGAT	1 cut(s)	964
BsuI	GTATCC	2 cut(s)	3, 804
BsuRI	GGCC	1 cut(s)	759
BsuTUI	ATCGAT	1 cut(s)	964
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	2 cut(s)	696, 939
BtsI	GCAGTG	2 cut(s)	943, 1016
BtsIMutI	CAGTG	2 cut(s)	943, 1016
Cac8I	GCNNGC	3 cut(s)	478, 678, 980
CaiI	CAGNNNCTG	1 cut(s)	945
CfoI	GCGC	1 cut(s)	507
ClaI	ATCGAT	1 cut(s)	964
Csp6I	GTAC	3 cut(s)	4, 223, 325
CviAII	CATG	2 cut(s)	197, 970
CviJI	RGCY	6 cut(s)	27, 653, 676, 712, 759, 781
CviKI_1	RGCY	6 cut(s)	27, 653, 676, 712, 759, 781
CviQI	GTAC	3 cut(s)	4, 223, 325
DdeI	CTNAG	2 cut(s)	744, 1055
DpnI	GATC	4 cut(s)	53, 195, 885, 967
DpnII	GATC	4 cut(s)	51, 193, 883, 965
DraI	TTTAAA	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	2 cut(s)	42, 283
EarI	CTCTTC	2 cut(s)	42, 283
Eco105I	TACGTA	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	969
EcoT14I	CCWWGG	1 cut(s)	969
ErhI	CCWWGG	1 cut(s)	969
FaeI	CATG	2 cut(s)	200, 973
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	196, 969
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	2 cut(s)	683, 946
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	511
GsuI	CTGGAG	2 cut(s)	465, 900
HaeIII	GGCC	1 cut(s)	759
HapII	CCGG	1 cut(s)	7
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	200, 973
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	6 cut(s)	233, 335, 344, 735, 768, 833
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	3 cut(s)	610, 730, 832
Hpy166II	GTNNAC	2 cut(s)	325, 723
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	2 cut(s)	464, 566
Hpy8I	GTNNAC	2 cut(s)	325, 723
Hpy99I	CGWCG	1 cut(s)	1052
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	2 cut(s)	244, 329
HpyCH4IV	ACGT	3 cut(s)	221, 642, 1047
HpyCH4V	TGCA	7 cut(s)	22, 83, 890, 901, 959, 1009, 1033
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	744, 1055
HpySE526I	ACGT	3 cut(s)	221, 642, 1047
Hsp92II	CATG	2 cut(s)	200, 973
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	51, 193, 883, 965
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	3 cut(s)	221, 642, 1047
MaeIII	GTNAC	4 cut(s)	310, 598, 803, 941
MalI	GATC	4 cut(s)	53, 195, 885, 967
MboI	GATC	4 cut(s)	51, 193, 883, 965
MboII	GAAGA	3 cut(s)	59, 88, 300
MfeI	CAATTG	2 cut(s)	147, 902
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	2 cut(s)	60, 268
MlsI	TGGCCA	1 cut(s)	759
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	3 cut(s)	227, 338, 842
MmeI	TCCRAC	1 cut(s)	558
Mox20I	TGGCCA	1 cut(s)	759
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	2 cut(s)	452, 999
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	759
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	7
MunI	CAATTG	2 cut(s)	147, 902
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	969
NdeII	GATC	4 cut(s)	51, 193, 883, 965
NlaIII	CATG	2 cut(s)	200, 973
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	598, 941
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	335, 735, 768
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	3 cut(s)	227, 338, 841
PpsI	GAGTC	3 cut(s)	227, 338, 841
Ppu21I	YACGTR	1 cut(s)	222
PshBI	ATTAAT	1 cut(s)	999
PsiI	TTATAA	1 cut(s)	213
Psp1406I	AACGTT	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	945
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	3 cut(s)	5, 224, 326
RsaNI	GTAC	3 cut(s)	4, 223, 325
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	452, 999
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	4 cut(s)	51, 193, 883, 965
SchI	GAGTC	3 cut(s)	227, 338, 842
SduI	GDGCHC	2 cut(s)	60, 268
SetI	ASST	9 cut(s)	29, 224, 254, 382, 585, 645, 743, 900, 1050
SfaNI	GCATC	1 cut(s)	422
SfcI	CTRYAG	1 cut(s)	949
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SnaBI	TACGTA	1 cut(s)	222
SsiI	CCGC	1 cut(s)	441
SspI	AATATT	2 cut(s)	282, 615
SspMI	CTAG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	969
TaaI	ACNGT	2 cut(s)	244, 329
TaiI	ACGT	3 cut(s)	224, 645, 1050
TaqI	TCGA	5 cut(s)	54, 99, 123, 205, 964
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	335, 735, 768
Tru1I	TTAA	2 cut(s)	452, 999
Tru9I	TTAA	2 cut(s)	452, 999
TscAI	CASTG	2 cut(s)	950, 1016
TseFI	GTSAC	2 cut(s)	598, 941
Tsp45I	GTSAC	2 cut(s)	598, 941
TspDTI	ATGAA	1 cut(s)	1008
TspRI	CASTG	2 cut(s)	950, 1016
Van91I	CCANNNNNTGG	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	999
XapI	RAATTY	2 cut(s)	166, 773
XbaI	TCTAGA	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.