phenylalanine--tRNA ligase, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58140 |
| fragaria_vesca | FvH4_3g12680 FvH4_3g12680 FvH4_3g12680 |
| malus_domestica | MD05G1248600.v1.1 MD10G1229100.v1.1 |
| prunus_persica | Prupe.4G115500_v2.0.a1 |
| pyrus_communis | pycom05g22530 pycom10g19270 |
| rosa_chinensis | RchiOBHm_Chr3g0486261 RchiOBHm_Chr5g0020641 |
| rosa_laevigata | RLG00000023089 RLG00000032549 |
| rosa_multiflora | Rmu_sc0001857.1_g000018 Rmu_sc0005607.1_g000020 Rmu_sc0005842.1_g000003 Rmu_sc0007661.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00057630 Rroxscaffold_6G00395930 |
| rosa_rugosa | Rorug03G0224300 Rorug03G0224400 Rorug03G0224500 Rorug05G0062200 |
| rosa_samantha | Rh3AG274300 Rh3BG309600 Rh3CG308800 Rh5AG151900 Rh5BG151600 Rh5CG162900 Rh5DG150800 |
| rosa_wichuraiana | Rw0G022550 Rw3G024320 Rw5G013460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 986 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 235, 878 |
| AciI | CCGC | 2 cut(s) | 634, 786 |
| AclWI | GGATC | 2 cut(s) | 1019, 1072 |
| AcsI | RAATTY | 2 cut(s) | 659, 875 |
| AfaI | GTAC | 4 cut(s) | 777, 860, 926, 1251 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 235, 357, 358, 417, 430, 640, 878, 1512 |
| AflII | CTTAAG | 1 cut(s) | 1352 |
| AjnI | CCWGG | 2 cut(s) | 256, 1444 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 413, 445 |
| AleI | CACNNNNGTG | 1 cut(s) | 1376 |
| AluBI | AGCT | 6 cut(s) | 9, 18, 316, 344, 808, 1043 |
| AluI | AGCT | 6 cut(s) | 9, 18, 316, 344, 808, 1043 |
| Alw26I | GTCTC | 1 cut(s) | 540 |
| AlwI | GGATC | 2 cut(s) | 1019, 1072 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 235, 263 |
| AoxI | GGCC | 6 cut(s) | 333, 791, 851, 965, 1358, 1488 |
| ApeKI | GCWGC | 2 cut(s) | 9, 488 |
| ApoI | RAATTY | 2 cut(s) | 659, 875 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 860, 892 |
| AspS9I | GGNCC | 5 cut(s) | 33, 348, 791, 992, 1489 |
| AsuC2I | CCSGG | 2 cut(s) | 1000, 1107 |
| AsuHPI | GGTGA | 5 cut(s) | 782, 850, 1252, 1285, 1411 |
| AsuNHI | GCTAGC | 1 cut(s) | 1316 |
| AvaII | GGWCC | 3 cut(s) | 33, 348, 992 |
| BanII | GRGCYC | 1 cut(s) | 411 |
| BbsI | GAAGAC | 1 cut(s) | 819 |
| BbvCI | CCTCAGC | 1 cut(s) | 1134 |
| BbvI | GCAGC | 1 cut(s) | 475 |
| BccI | CCATC | 3 cut(s) | 217, 972, 1121 |
| BciT130I | CCWGG | 2 cut(s) | 258, 1446 |
| BciVI | GTATCC | 1 cut(s) | 1510 |
| BclI | TGATCA | 4 cut(s) | 832, 1056, 1275, 1456 |
| BcnI | CCSGG | 2 cut(s) | 1000, 1107 |
| BcoDI | GTCTC | 1 cut(s) | 540 |
| BfaI | CTAG | 2 cut(s) | 1317, 1561 |
| BfrI | CTTAAG | 1 cut(s) | 1352 |
| BfuI | GTATCC | 1 cut(s) | 1510 |
| BisI | GCNGC | 3 cut(s) | 10, 489, 786 |
| BlsI | GCNGC | 3 cut(s) | 11, 490, 787 |
| Bme1390I | CCNGG | 4 cut(s) | 258, 1000, 1107, 1446 |
| Bme18I | GGWCC | 3 cut(s) | 33, 348, 992 |
| BmgT120I | GGNCC | 5 cut(s) | 33, 348, 791, 992, 1489 |
| BmiI | GGNNCC | 5 cut(s) | 349, 350, 422, 681, 1009 |
| BmrFI | CCNGG | 4 cut(s) | 258, 1000, 1107, 1446 |
| BmrI | ACTGGG | 2 cut(s) | 245, 1113 |
| BmsI | GCATC | 2 cut(s) | 737, 1123 |
| BmtI | GCTAGC | 1 cut(s) | 1320 |
| BmuI | ACTGGG | 2 cut(s) | 245, 1113 |
| BpiI | GAAGAC | 1 cut(s) | 819 |
| BpmI | CTGGAG | 1 cut(s) | 1254 |
| Bpu10I | CCTNAGC | 2 cut(s) | 286, 1134 |
| BpuEI | CTTGAG | 3 cut(s) | 256, 344, 635 |
| BpuMI | CCSGG | 2 cut(s) | 1000, 1107 |
| BsaJI | CCNNGG | 2 cut(s) | 256, 1106 |
| BsaWI | WCCGGW | 1 cut(s) | 530 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 873, 903, 926, 956 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 235, 357, 358, 417, 430, 640, 878, 1512 |
| Bse118I | RCCGGY | 1 cut(s) | 793 |
| Bse1I | ACTGG | 3 cut(s) | 240, 286, 1119 |
| Bse3DI | GCAATG | 1 cut(s) | 483 |
| BseBI | CCWGG | 2 cut(s) | 258, 1446 |
| BseDI | CCNNGG | 2 cut(s) | 256, 1106 |
| BseGI | GGATG | 1 cut(s) | 1114 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 235, 357, 358, 417, 430, 640, 878, 1512 |
| BseMI | GCAATG | 1 cut(s) | 483 |
| BseMII | CTCAG | 2 cut(s) | 454, 1125 |
| BseNI | ACTGG | 3 cut(s) | 240, 286, 1119 |
| BseXI | GCAGC | 1 cut(s) | 475 |
| BseYI | CCCAGC | 2 cut(s) | 344, 788 |
| BshFI | GGCC | 6 cut(s) | 335, 793, 853, 967, 1360, 1490 |
| BsiSI | CCGG | 4 cut(s) | 531, 794, 999, 1106 |
| BslFI | GGGAC | 1 cut(s) | 361 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 235, 357, 358, 417, 430, 640, 878, 1512 |
| BsmAI | GTCTC | 1 cut(s) | 540 |
| BsmFI | GGGAC | 1 cut(s) | 361 |
| BsmI | GAATGC | 2 cut(s) | 1054, 1544 |
| BsnI | GGCC | 6 cut(s) | 335, 793, 853, 967, 1360, 1490 |
| Bsp1286I | GDGCHC | 1 cut(s) | 411 |
| Bsp1407I | TGTACA | 1 cut(s) | 775 |
| Bsp143I | GATC | 8 cut(s) | 78, 832, 1024, 1056, 1064, 1275, 1393, 1456 |
| BspACI | CCGC | 2 cut(s) | 634, 786 |
| BspANI | GGCC | 6 cut(s) | 335, 793, 853, 967, 1360, 1490 |
| BspCNI | CTCAG | 2 cut(s) | 453, 1126 |
| BspHI | TCATGA | 2 cut(s) | 403, 1170 |
| BspLI | GGNNCC | 5 cut(s) | 349, 350, 422, 681, 1009 |
| BspOI | GCTAGC | 1 cut(s) | 1320 |
| BspPI | GGATC | 2 cut(s) | 1019, 1072 |
| BspTI | CTTAAG | 1 cut(s) | 1352 |
| BsrDI | GCAATG | 1 cut(s) | 483 |
| BsrFI | RCCGGY | 1 cut(s) | 793 |
| BsrGI | TGTACA | 1 cut(s) | 775 |
| BsrI | ACTGG | 3 cut(s) | 240, 286, 1119 |
| BssAI | RCCGGY | 1 cut(s) | 793 |
| BssECI | CCNNGG | 2 cut(s) | 256, 1106 |
| BssMI | GATC | 8 cut(s) | 78, 832, 1024, 1056, 1064, 1275, 1393, 1456 |
| Bst2UI | CCWGG | 2 cut(s) | 258, 1446 |
| Bst4CI | ACNGT | 3 cut(s) | 373, 765, 1522 |
| Bst6I | CTCTTC | 4 cut(s) | 138, 572, 840, 1473 |
| BstAFI | CTTAAG | 1 cut(s) | 1352 |
| BstAUI | TGTACA | 1 cut(s) | 775 |
| BstC8I | GCNNGC | 3 cut(s) | 1144, 1318, 1369 |
| BstDEI | CTNAG | 3 cut(s) | 286, 440, 1134 |
| BstF5I | GGATG | 1 cut(s) | 1114 |
| BstKTI | GATC | 8 cut(s) | 81, 835, 1027, 1059, 1067, 1278, 1396, 1459 |
| BstMAI | GTCTC | 1 cut(s) | 540 |
| BstMBI | GATC | 8 cut(s) | 78, 832, 1024, 1056, 1064, 1275, 1393, 1456 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 15, 341, 642, 1049, 1139, 1433 |
| BstNI | CCWGG | 2 cut(s) | 258, 1446 |
| BstNSI | RCATGY | 1 cut(s) | 1146 |
| BstSCI | CCNGG | 4 cut(s) | 256, 998, 1105, 1444 |
| BstV1I | GCAGC | 1 cut(s) | 475 |
| BstV2I | GAAGAC | 1 cut(s) | 819 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1375 |
| BsuI | GTATCC | 1 cut(s) | 1510 |
| BsuRI | GGCC | 6 cut(s) | 335, 793, 853, 967, 1360, 1490 |
| BtsCI | GGATG | 1 cut(s) | 1114 |
| BtsIMutI | CAGTG | 4 cut(s) | 233, 279, 448, 529 |
| Cac8I | GCNNGC | 3 cut(s) | 1144, 1318, 1369 |
| CaiI | CAGNNNCTG | 2 cut(s) | 235, 263 |
| CciI | TCATGA | 2 cut(s) | 403, 1170 |
| Cfr10I | RCCGGY | 1 cut(s) | 793 |
| Cfr13I | GGNCC | 5 cut(s) | 33, 348, 791, 992, 1489 |
| Csp6I | GTAC | 4 cut(s) | 776, 859, 925, 1250 |
| CviAII | CATG | 4 cut(s) | 221, 404, 1143, 1171 |
| CviQI | GTAC | 4 cut(s) | 776, 859, 925, 1250 |
| DdeI | CTNAG | 3 cut(s) | 286, 440, 1134 |
| DpnI | GATC | 8 cut(s) | 80, 834, 1026, 1058, 1066, 1277, 1395, 1458 |
| DpnII | GATC | 8 cut(s) | 78, 832, 1024, 1056, 1064, 1275, 1393, 1456 |
| Eam1104I | CTCTTC | 4 cut(s) | 138, 572, 840, 1473 |
| EarI | CTCTTC | 4 cut(s) | 138, 572, 840, 1473 |
| Eco24I | GRGCYC | 1 cut(s) | 411 |
| Eco47I | GGWCC | 3 cut(s) | 33, 348, 992 |
| EcoO109I | RGGNCCY | 1 cut(s) | 348 |
| EcoRI | GAATTC | 1 cut(s) | 659 |
| EcoRII | CCWGG | 2 cut(s) | 256, 1444 |
| EcoT38I | GRGCYC | 1 cut(s) | 411 |
| FaeI | CATG | 4 cut(s) | 224, 407, 1146, 1174 |
| FaqI | GGGAC | 1 cut(s) | 361 |
| FatI | CATG | 4 cut(s) | 220, 403, 1142, 1170 |
| FbaI | TGATCA | 4 cut(s) | 832, 1056, 1275, 1456 |
| Fnu4HI | GCNGC | 3 cut(s) | 10, 489, 786 |
| FokI | GGATG | 1 cut(s) | 1101 |
| FriOI | GRGCYC | 1 cut(s) | 411 |
| Fsp4HI | GCNGC | 3 cut(s) | 10, 489, 786 |
| FspBI | CTAG | 2 cut(s) | 1317, 1561 |
| GluI | GCNGC | 3 cut(s) | 10, 489, 786 |
| GsaI | CCCAGC | 2 cut(s) | 348, 792 |
| GsuI | CTGGAG | 1 cut(s) | 1254 |
| HaeIII | GGCC | 6 cut(s) | 335, 793, 853, 967, 1360, 1490 |
| HapII | CCGG | 4 cut(s) | 531, 794, 999, 1106 |
| Hin1II | CATG | 4 cut(s) | 224, 407, 1146, 1174 |
| HincII | GTYRAC | 1 cut(s) | 268 |
| HindII | GTYRAC | 1 cut(s) | 268 |
| HindIII | AAGCTT | 2 cut(s) | 16, 806 |
| HinfI | GANTC | 4 cut(s) | 225, 328, 1289, 1529 |
| HpaII | CCGG | 4 cut(s) | 531, 794, 999, 1106 |
| HphI | GGTGA | 5 cut(s) | 782, 850, 1252, 1285, 1411 |
| Hpy166II | GTNNAC | 4 cut(s) | 268, 925, 1402, 1502 |
| Hpy188I | TCNGA | 5 cut(s) | 83, 559, 670, 733, 907 |
| Hpy188III | TCNNGA | 9 cut(s) | 273, 323, 404, 571, 593, 1091, 1124, 1171, 1383 |
| Hpy8I | GTNNAC | 4 cut(s) | 268, 925, 1402, 1502 |
| HpyAV | CCTTC | 6 cut(s) | 176, 510, 633, 698, 1480, 1519 |
| HpyCH4III | ACNGT | 3 cut(s) | 373, 765, 1522 |
| HpyCH4V | TGCA | 9 cut(s) | 12, 398, 728, 893, 1114, 1187, 1221, 1468, 1544 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 15, 341, 642, 1049, 1139, 1433 |
| HpyF3I | CTNAG | 3 cut(s) | 286, 440, 1134 |
| Hsp92II | CATG | 4 cut(s) | 224, 407, 1146, 1174 |
| KflI | GGGWCCC | 1 cut(s) | 348 |
| Ksp22I | TGATCA | 4 cut(s) | 832, 1056, 1275, 1456 |
| Kzo9I | GATC | 8 cut(s) | 78, 832, 1024, 1056, 1064, 1275, 1393, 1456 |
| LmnI | GCTCC | 1 cut(s) | 211 |
| Lsp1109I | GCAGC | 1 cut(s) | 475 |
| LweI | GCATC | 2 cut(s) | 737, 1123 |
| MaeI | CTAG | 2 cut(s) | 1317, 1561 |
| MaeIII | GTNAC | 1 cut(s) | 1522 |
| MalI | GATC | 8 cut(s) | 80, 834, 1026, 1058, 1066, 1277, 1395, 1458 |
| MboI | GATC | 8 cut(s) | 78, 832, 1024, 1056, 1064, 1275, 1393, 1456 |
| MfeI | CAATTG | 2 cut(s) | 718, 1293 |
| MhlI | GDGCHC | 1 cut(s) | 411 |
| MlyI | GAGTC | 1 cut(s) | 234 |
| MmeI | TCCRAC | 2 cut(s) | 411, 681 |
| MseI | TTAA | 2 cut(s) | 195, 1353 |
| MslI | CAYNNNNRTG | 2 cut(s) | 219, 1376 |
| MspA1I | CMGCKG | 2 cut(s) | 9, 788 |
| MspCI | CTTAAG | 1 cut(s) | 1352 |
| MspI | CCGG | 4 cut(s) | 531, 794, 999, 1106 |
| MspR9I | CCNGG | 4 cut(s) | 258, 1000, 1107, 1446 |
| MunI | CAATTG | 2 cut(s) | 718, 1293 |
| Mva1269I | GAATGC | 2 cut(s) | 1054, 1544 |
| MvaI | CCWGG | 2 cut(s) | 258, 1446 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 15, 341, 642, 1049, 1139, 1433 |
| NciI | CCSGG | 2 cut(s) | 1000, 1107 |
| NdeII | GATC | 8 cut(s) | 78, 832, 1024, 1056, 1064, 1275, 1393, 1456 |
| NheI | GCTAGC | 1 cut(s) | 1316 |
| NlaIII | CATG | 4 cut(s) | 224, 407, 1146, 1174 |
| NlaIV | GGNNCC | 5 cut(s) | 349, 350, 422, 681, 1009 |
| NspI | RCATGY | 1 cut(s) | 1146 |
| OliI | CACNNNNGTG | 1 cut(s) | 1376 |
| PaeI | GCATGC | 1 cut(s) | 1146 |
| PagI | TCATGA | 2 cut(s) | 403, 1170 |
| PctI | GAATGC | 2 cut(s) | 1054, 1544 |
| PfeI | GAWTC | 3 cut(s) | 328, 1289, 1529 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 235, 878 |
| PkrI | GCNGC | 3 cut(s) | 11, 490, 787 |
| PleI | GAGTC | 1 cut(s) | 233 |
| PpsI | GAGTC | 1 cut(s) | 233 |
| PpuMI | RGGWCCY | 1 cut(s) | 348 |
| PsiI | TTATAA | 1 cut(s) | 986 |
| Psp5II | RGGWCCY | 1 cut(s) | 348 |
| Psp6I | CCWGG | 2 cut(s) | 256, 1444 |
| PspFI | CCCAGC | 2 cut(s) | 344, 788 |
| PspGI | CCWGG | 2 cut(s) | 256, 1444 |
| PspN4I | GGNNCC | 5 cut(s) | 349, 350, 422, 681, 1009 |
| PspPI | GGNCC | 5 cut(s) | 33, 348, 791, 992, 1489 |
| PspPPI | RGGWCCY | 1 cut(s) | 348 |
| PstNI | CAGNNNCTG | 2 cut(s) | 235, 263 |
| PvuII | CAGCTG | 1 cut(s) | 9 |
| RsaI | GTAC | 4 cut(s) | 777, 860, 926, 1251 |
| RsaNI | GTAC | 4 cut(s) | 776, 859, 925, 1250 |
| RseI | CAYNNNNRTG | 2 cut(s) | 219, 1376 |
| SaqAI | TTAA | 2 cut(s) | 195, 1353 |
| SatI | GCNGC | 3 cut(s) | 10, 489, 786 |
| Sau3AI | GATC | 8 cut(s) | 78, 832, 1024, 1056, 1064, 1275, 1393, 1456 |
| Sau96I | GGNCC | 5 cut(s) | 33, 348, 791, 992, 1489 |
| SchI | GAGTC | 1 cut(s) | 234 |
| ScrFI | CCNGG | 4 cut(s) | 258, 1000, 1107, 1446 |
| SduI | GDGCHC | 1 cut(s) | 411 |
| SfaNI | GCATC | 2 cut(s) | 737, 1123 |
| SinI | GGWCC | 3 cut(s) | 33, 348, 992 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 219, 1376 |
| SmlI | CTYRAG | 4 cut(s) | 271, 323, 614, 1352 |
| SmoI | CTYRAG | 4 cut(s) | 271, 323, 614, 1352 |
| SphI | GCATGC | 1 cut(s) | 1146 |
| SsiI | CCGC | 2 cut(s) | 634, 786 |
| SspMI | CTAG | 2 cut(s) | 1317, 1561 |
| StyD4I | CCNGG | 4 cut(s) | 256, 998, 1105, 1444 |
| TaaI | ACNGT | 3 cut(s) | 373, 765, 1522 |
| TaqI | TCGA | 2 cut(s) | 515, 1215 |
| TatI | WGTACW | 2 cut(s) | 775, 924 |
| TauI | GCSGC | 1 cut(s) | 788 |
| TfiI | GAWTC | 3 cut(s) | 328, 1289, 1529 |
| Tru1I | TTAA | 2 cut(s) | 195, 1353 |
| Tru9I | TTAA | 2 cut(s) | 195, 1353 |
| TscAI | CASTG | 4 cut(s) | 240, 286, 448, 529 |
| TseI | GCWGC | 2 cut(s) | 9, 488 |
| TspDTI | ATGAA | 8 cut(s) | 186, 492, 614, 652, 818, 927, 1159, 1187 |
| TspRI | CASTG | 4 cut(s) | 240, 286, 448, 529 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 235, 878 |
| Vha464I | CTTAAG | 1 cut(s) | 1352 |
| VpaK11BI | GGWCC | 3 cut(s) | 33, 348, 992 |
| XapI | RAATTY | 2 cut(s) | 659, 875 |
| XceI | RCATGY | 1 cut(s) | 1146 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 975 |
| XspI | CTAG | 2 cut(s) | 1317, 1561 |