Rorug03G0224300

phenylalanine--tRNA ligase, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
20544100 .. 20546983
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0224300.1

Sequence Viewer

Length: 1563 bp
ATGTTCAGCTGCAAAAGCTTATTGTCCAAAAGGACCAAAACCATAAAGAAAAAGAAGAAAAACAAGAGCAAAAACAAGATCAGAAGCAAAAATGTTCCCACAAAACAAAACCCCATTTGCGAAAAATACCAAGAAGAAGAAGAAGAGATAGAGGAAGAAGAAGATAGTGATGAAGTTGAAGAAGGCTTCAATCTTAAAGCCTCTGCTCCATCTCACACACATGGAGTCCAGCCACTGGGCAATCTCTACCTCAACCCAGGTTCTGTCAACTCAAGAAACACTGGCTTAGGTAATCTCCAAACCCTAACAGATGAGCTTGTTCTTGAGATTCTGGCCTTTTTAGCTGGGACCCACTTGGGGGTTTTGGCAACTGTGAGCAAATCATTTTATATCTTTGCAAATCATGAGCCCCTTTGGAGGAACCTTGCGTTGGAAAATCTCAGTGATAGGCTTTTGTATAGTGGCTCTTGGAAATCTACTTACATTGCTGCTCATTACCCTTCATTTGATGTGTCGAATATCAGTGTTTCCGGTTTGAGAGTGAGAGACTTTTATTCTGACTATCTCTTCCAGAGTTGGCTCTGTGCCAATCTTGAAATGAAACCCGAATGGCTTGAGAGAGATAATATAATCCGCAGAAGGGGCATTTCAGTTGAGGAATTCATTTCCGATTTTGAGGAACCGAATAAGCCTGTGCTGTTGGAAGGGTGTATGGACAATTGGGTTGCATCAGAGAAATGGGATAGAGATTATTTGGTTCAACTGTGTGGTGATGTACAATTTGCCGCTGGGCCGGTGGAGATGAAGCTTGAAGACTATTTTAGGTATGCTGATCAGGTGAGGGAAGAGAGGCCATTGTACCTTTTTGACCCAAAATTTGGAGAAAAAGTTGCAAGATTGGGTTCGGATTATGAAGTTCCTGTGTACTTTAGGGAGGACTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGATGGATTATAATTGGACCAGCCGGGTCAGGTTCCTCGTTCCACATTGATCCTAATTCAACATCAGCTTGGAATGCTGTGATCAAGGGATCAAAGAAGTGGGTGTTGTTTCCTCCTGATGTTGTTCCTCCGGGGGTGCATCCCAGTCCAGATGGTGCTGAGGTGGCATGCCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGTGCAACAAAGACTTGGAAAAGGAAACCTATCGAGTGCATTTGTAAGGCTGGAGAGGTGATTTTTGTACCTAATGGTTGGTGGCATTTGGTGATCAACTTGGAGGAATCAATTGCCATTACGCAGAATTATGCTAGCAGGAGTAATTTGTTGAATGTCTTGGATTTTCTTAAGAGGCCAAATGCCAGCACTCTGGTGTCTGGAACGAGAGATCGGGTGAACTTGTATGATAAGTTTAGAAATGCTATTGAGGCTTCTTTACCTGGAACTATTGATCATTTGTTGCAAAAAGCAGAAGAGAAGAAGGCCCAACAGAGTAAACCCTCCTTCTGGGATACAGTTACAGATTCAAAGGCTGGTGCATTCAAGTTCTCTTTCTAG

Protein Analysis

520

Amino Acids

59.23

Weight (kDa)

5.77

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 104 - 144 4.7e-06 F-box-like
Cupin_8 PF13621 220 - 440 2e-20 Cupin-like domain
JmjC PF02373 327 - 437 2.6e-12 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
AccB7I CCANNNNNTGG 2 cut(s) 235, 878
AciI CCGC 2 cut(s) 634, 786
AclWI GGATC 2 cut(s) 1019, 1072
AcsI RAATTY 2 cut(s) 659, 875
AfaI GTAC 4 cut(s) 777, 860, 926, 1251
AfiI CCNNNNNNNGG 8 cut(s) 235, 357, 358, 417, 430, 640, 878, 1512
AflII CTTAAG 1 cut(s) 1352
AjnI CCWGG 2 cut(s) 256, 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AleI CACNNNNGTG 1 cut(s) 1376
AluBI AGCT 6 cut(s) 9, 18, 316, 344, 808, 1043
AluI AGCT 6 cut(s) 9, 18, 316, 344, 808, 1043
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 2 cut(s) 1019, 1072
AlwNI CAGNNNCTG 2 cut(s) 235, 263
AoxI GGCC 6 cut(s) 333, 791, 851, 965, 1358, 1488
ApeKI GCWGC 2 cut(s) 9, 488
ApoI RAATTY 2 cut(s) 659, 875
ArsI GACNNNNNNTTYG 2 cut(s) 860, 892
AspS9I GGNCC 5 cut(s) 33, 348, 791, 992, 1489
AsuC2I CCSGG 2 cut(s) 1000, 1107
AsuHPI GGTGA 5 cut(s) 782, 850, 1252, 1285, 1411
AsuNHI GCTAGC 1 cut(s) 1316
AvaII GGWCC 3 cut(s) 33, 348, 992
BanII GRGCYC 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 819
BbvCI CCTCAGC 1 cut(s) 1134
BbvI GCAGC 1 cut(s) 475
BccI CCATC 3 cut(s) 217, 972, 1121
BciT130I CCWGG 2 cut(s) 258, 1446
BciVI GTATCC 1 cut(s) 1510
BclI TGATCA 4 cut(s) 832, 1056, 1275, 1456
BcnI CCSGG 2 cut(s) 1000, 1107
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 2 cut(s) 1317, 1561
BfrI CTTAAG 1 cut(s) 1352
BfuI GTATCC 1 cut(s) 1510
BisI GCNGC 3 cut(s) 10, 489, 786
BlsI GCNGC 3 cut(s) 11, 490, 787
Bme1390I CCNGG 4 cut(s) 258, 1000, 1107, 1446
Bme18I GGWCC 3 cut(s) 33, 348, 992
BmgT120I GGNCC 5 cut(s) 33, 348, 791, 992, 1489
BmiI GGNNCC 5 cut(s) 349, 350, 422, 681, 1009
BmrFI CCNGG 4 cut(s) 258, 1000, 1107, 1446
BmrI ACTGGG 2 cut(s) 245, 1113
BmsI GCATC 2 cut(s) 737, 1123
BmtI GCTAGC 1 cut(s) 1320
BmuI ACTGGG 2 cut(s) 245, 1113
BpiI GAAGAC 1 cut(s) 819
BpmI CTGGAG 1 cut(s) 1254
Bpu10I CCTNAGC 2 cut(s) 286, 1134
BpuEI CTTGAG 3 cut(s) 256, 344, 635
BpuMI CCSGG 2 cut(s) 1000, 1107
BsaJI CCNNGG 2 cut(s) 256, 1106
BsaWI WCCGGW 1 cut(s) 530
BsaXI ACNNNNNCTCC 4 cut(s) 873, 903, 926, 956
Bsc4I CCNNNNNNNGG 8 cut(s) 235, 357, 358, 417, 430, 640, 878, 1512
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 3 cut(s) 240, 286, 1119
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 2 cut(s) 258, 1446
BseDI CCNNGG 2 cut(s) 256, 1106
BseGI GGATG 1 cut(s) 1114
BseLI CCNNNNNNNGG 8 cut(s) 235, 357, 358, 417, 430, 640, 878, 1512
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 454, 1125
BseNI ACTGG 3 cut(s) 240, 286, 1119
BseXI GCAGC 1 cut(s) 475
BseYI CCCAGC 2 cut(s) 344, 788
BshFI GGCC 6 cut(s) 335, 793, 853, 967, 1360, 1490
BsiSI CCGG 4 cut(s) 531, 794, 999, 1106
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 8 cut(s) 235, 357, 358, 417, 430, 640, 878, 1512
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 361
BsmI GAATGC 2 cut(s) 1054, 1544
BsnI GGCC 6 cut(s) 335, 793, 853, 967, 1360, 1490
Bsp1286I GDGCHC 1 cut(s) 411
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 8 cut(s) 78, 832, 1024, 1056, 1064, 1275, 1393, 1456
BspACI CCGC 2 cut(s) 634, 786
BspANI GGCC 6 cut(s) 335, 793, 853, 967, 1360, 1490
BspCNI CTCAG 2 cut(s) 453, 1126
BspHI TCATGA 2 cut(s) 403, 1170
BspLI GGNNCC 5 cut(s) 349, 350, 422, 681, 1009
BspOI GCTAGC 1 cut(s) 1320
BspPI GGATC 2 cut(s) 1019, 1072
BspTI CTTAAG 1 cut(s) 1352
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 793
BsrGI TGTACA 1 cut(s) 775
BsrI ACTGG 3 cut(s) 240, 286, 1119
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 2 cut(s) 256, 1106
BssMI GATC 8 cut(s) 78, 832, 1024, 1056, 1064, 1275, 1393, 1456
Bst2UI CCWGG 2 cut(s) 258, 1446
Bst4CI ACNGT 3 cut(s) 373, 765, 1522
Bst6I CTCTTC 4 cut(s) 138, 572, 840, 1473
BstAFI CTTAAG 1 cut(s) 1352
BstAUI TGTACA 1 cut(s) 775
BstC8I GCNNGC 3 cut(s) 1144, 1318, 1369
BstDEI CTNAG 3 cut(s) 286, 440, 1134
BstF5I GGATG 1 cut(s) 1114
BstKTI GATC 8 cut(s) 81, 835, 1027, 1059, 1067, 1278, 1396, 1459
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 8 cut(s) 78, 832, 1024, 1056, 1064, 1275, 1393, 1456
BstMWI GCNNNNNNNGC 6 cut(s) 15, 341, 642, 1049, 1139, 1433
BstNI CCWGG 2 cut(s) 258, 1446
BstNSI RCATGY 1 cut(s) 1146
BstSCI CCNGG 4 cut(s) 256, 998, 1105, 1444
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 819
BstXI CCANNNNNNTGG 1 cut(s) 1375
BsuI GTATCC 1 cut(s) 1510
BsuRI GGCC 6 cut(s) 335, 793, 853, 967, 1360, 1490
BtsCI GGATG 1 cut(s) 1114
BtsIMutI CAGTG 4 cut(s) 233, 279, 448, 529
Cac8I GCNNGC 3 cut(s) 1144, 1318, 1369
CaiI CAGNNNCTG 2 cut(s) 235, 263
CciI TCATGA 2 cut(s) 403, 1170
Cfr10I RCCGGY 1 cut(s) 793
Cfr13I GGNCC 5 cut(s) 33, 348, 791, 992, 1489
Csp6I GTAC 4 cut(s) 776, 859, 925, 1250
CviAII CATG 4 cut(s) 221, 404, 1143, 1171
CviQI GTAC 4 cut(s) 776, 859, 925, 1250
DdeI CTNAG 3 cut(s) 286, 440, 1134
DpnI GATC 8 cut(s) 80, 834, 1026, 1058, 1066, 1277, 1395, 1458
DpnII GATC 8 cut(s) 78, 832, 1024, 1056, 1064, 1275, 1393, 1456
Eam1104I CTCTTC 4 cut(s) 138, 572, 840, 1473
EarI CTCTTC 4 cut(s) 138, 572, 840, 1473
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 3 cut(s) 33, 348, 992
EcoO109I RGGNCCY 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 659
EcoRII CCWGG 2 cut(s) 256, 1444
EcoT38I GRGCYC 1 cut(s) 411
FaeI CATG 4 cut(s) 224, 407, 1146, 1174
FaqI GGGAC 1 cut(s) 361
FatI CATG 4 cut(s) 220, 403, 1142, 1170
FbaI TGATCA 4 cut(s) 832, 1056, 1275, 1456
Fnu4HI GCNGC 3 cut(s) 10, 489, 786
FokI GGATG 1 cut(s) 1101
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 3 cut(s) 10, 489, 786
FspBI CTAG 2 cut(s) 1317, 1561
GluI GCNGC 3 cut(s) 10, 489, 786
GsaI CCCAGC 2 cut(s) 348, 792
GsuI CTGGAG 1 cut(s) 1254
HaeIII GGCC 6 cut(s) 335, 793, 853, 967, 1360, 1490
HapII CCGG 4 cut(s) 531, 794, 999, 1106
Hin1II CATG 4 cut(s) 224, 407, 1146, 1174
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 16, 806
HinfI GANTC 4 cut(s) 225, 328, 1289, 1529
HpaII CCGG 4 cut(s) 531, 794, 999, 1106
HphI GGTGA 5 cut(s) 782, 850, 1252, 1285, 1411
Hpy166II GTNNAC 4 cut(s) 268, 925, 1402, 1502
Hpy188I TCNGA 5 cut(s) 83, 559, 670, 733, 907
Hpy188III TCNNGA 9 cut(s) 273, 323, 404, 571, 593, 1091, 1124, 1171, 1383
Hpy8I GTNNAC 4 cut(s) 268, 925, 1402, 1502
HpyAV CCTTC 6 cut(s) 176, 510, 633, 698, 1480, 1519
HpyCH4III ACNGT 3 cut(s) 373, 765, 1522
HpyCH4V TGCA 9 cut(s) 12, 398, 728, 893, 1114, 1187, 1221, 1468, 1544
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 341, 642, 1049, 1139, 1433
HpyF3I CTNAG 3 cut(s) 286, 440, 1134
Hsp92II CATG 4 cut(s) 224, 407, 1146, 1174
KflI GGGWCCC 1 cut(s) 348
Ksp22I TGATCA 4 cut(s) 832, 1056, 1275, 1456
Kzo9I GATC 8 cut(s) 78, 832, 1024, 1056, 1064, 1275, 1393, 1456
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 2 cut(s) 737, 1123
MaeI CTAG 2 cut(s) 1317, 1561
MaeIII GTNAC 1 cut(s) 1522
MalI GATC 8 cut(s) 80, 834, 1026, 1058, 1066, 1277, 1395, 1458
MboI GATC 8 cut(s) 78, 832, 1024, 1056, 1064, 1275, 1393, 1456
MfeI CAATTG 2 cut(s) 718, 1293
MhlI GDGCHC 1 cut(s) 411
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 411, 681
MseI TTAA 2 cut(s) 195, 1353
MslI CAYNNNNRTG 2 cut(s) 219, 1376
MspA1I CMGCKG 2 cut(s) 9, 788
MspCI CTTAAG 1 cut(s) 1352
MspI CCGG 4 cut(s) 531, 794, 999, 1106
MspR9I CCNGG 4 cut(s) 258, 1000, 1107, 1446
MunI CAATTG 2 cut(s) 718, 1293
Mva1269I GAATGC 2 cut(s) 1054, 1544
MvaI CCWGG 2 cut(s) 258, 1446
MwoI GCNNNNNNNGC 6 cut(s) 15, 341, 642, 1049, 1139, 1433
NciI CCSGG 2 cut(s) 1000, 1107
NdeII GATC 8 cut(s) 78, 832, 1024, 1056, 1064, 1275, 1393, 1456
NheI GCTAGC 1 cut(s) 1316
NlaIII CATG 4 cut(s) 224, 407, 1146, 1174
NlaIV GGNNCC 5 cut(s) 349, 350, 422, 681, 1009
NspI RCATGY 1 cut(s) 1146
OliI CACNNNNGTG 1 cut(s) 1376
PaeI GCATGC 1 cut(s) 1146
PagI TCATGA 2 cut(s) 403, 1170
PctI GAATGC 2 cut(s) 1054, 1544
PfeI GAWTC 3 cut(s) 328, 1289, 1529
PflMI CCANNNNNTGG 2 cut(s) 235, 878
PkrI GCNGC 3 cut(s) 11, 490, 787
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 348
PsiI TTATAA 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 256, 1444
PspFI CCCAGC 2 cut(s) 344, 788
PspGI CCWGG 2 cut(s) 256, 1444
PspN4I GGNNCC 5 cut(s) 349, 350, 422, 681, 1009
PspPI GGNCC 5 cut(s) 33, 348, 791, 992, 1489
PspPPI RGGWCCY 1 cut(s) 348
PstNI CAGNNNCTG 2 cut(s) 235, 263
PvuII CAGCTG 1 cut(s) 9
RsaI GTAC 4 cut(s) 777, 860, 926, 1251
RsaNI GTAC 4 cut(s) 776, 859, 925, 1250
RseI CAYNNNNRTG 2 cut(s) 219, 1376
SaqAI TTAA 2 cut(s) 195, 1353
SatI GCNGC 3 cut(s) 10, 489, 786
Sau3AI GATC 8 cut(s) 78, 832, 1024, 1056, 1064, 1275, 1393, 1456
Sau96I GGNCC 5 cut(s) 33, 348, 791, 992, 1489
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 4 cut(s) 258, 1000, 1107, 1446
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 2 cut(s) 737, 1123
SinI GGWCC 3 cut(s) 33, 348, 992
SmiMI CAYNNNNRTG 2 cut(s) 219, 1376
SmlI CTYRAG 4 cut(s) 271, 323, 614, 1352
SmoI CTYRAG 4 cut(s) 271, 323, 614, 1352
SphI GCATGC 1 cut(s) 1146
SsiI CCGC 2 cut(s) 634, 786
SspMI CTAG 2 cut(s) 1317, 1561
StyD4I CCNGG 4 cut(s) 256, 998, 1105, 1444
TaaI ACNGT 3 cut(s) 373, 765, 1522
TaqI TCGA 2 cut(s) 515, 1215
TatI WGTACW 2 cut(s) 775, 924
TauI GCSGC 1 cut(s) 788
TfiI GAWTC 3 cut(s) 328, 1289, 1529
Tru1I TTAA 2 cut(s) 195, 1353
Tru9I TTAA 2 cut(s) 195, 1353
TscAI CASTG 4 cut(s) 240, 286, 448, 529
TseI GCWGC 2 cut(s) 9, 488
TspDTI ATGAA 8 cut(s) 186, 492, 614, 652, 818, 927, 1159, 1187
TspRI CASTG 4 cut(s) 240, 286, 448, 529
Van91I CCANNNNNTGG 2 cut(s) 235, 878
Vha464I CTTAAG 1 cut(s) 1352
VpaK11BI GGWCC 3 cut(s) 33, 348, 992
XapI RAATTY 2 cut(s) 659, 875
XceI RCATGY 1 cut(s) 1146
XcmI CCANNNNNNNNNTGG 1 cut(s) 975
XspI CTAG 2 cut(s) 1317, 1561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.