Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001857.1

Orthogroup ID

OG0004163

Physical Location & Seq

Genomic Coordinates Reverse (-)

73114 .. 77478

Gene Structure 4365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001857.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgcaactgcatagaagagaccagcacccacttggaattctcaagaatgctatctacgaatacttcgacaccaattactcgaacaagtttgataagttcgatgatctttgcccacttgtatctgttaaagagaattttgatgatgtattagttcctgctgatcatgtaagtcgaagctataacgatacatactatgtggactctcaaaccgttttgaggtgccatacaagtgctcatcaggcagagttattgagaaaaggacacactcatttccttgtaactggagatgtgtaccgcagggattccattgactctacacattaccctgtgttccatcagatggaaggcgttcgtgttttttctccggaagattgggcagcatttgggacagatgcaacatcttatgtagctgaggacttgaagaaatgtcttgagggtctggcaggccacctatttggtgctgtggagatgcgctgggttgatacatacttatttgtctcatgcgatcattctgttagaatttcttttccatttatgggtgaacaagagatggagaagaaggaaatggaagagaaagggggaggaccggaggaggaaaagtggttggaggttttgggttgcggagtaacagaacaagaaatattgaagagaagtgggaaaacagacaatgttgcttgggctttcggacttggattggagcggctggcaatggttctatttgacatccctgatattcgccttttctggtcatctgatgagaggtttacctctcagtttttgagtgggcagctgggagtcaagttcaagccatattcaaagtatcctccgtgttacaaagatgttagtttttggatcagtgaatctttcactgaaaacaatttatgtgaagttgttagagaggttgctggagatcttgctgaggaggtgcaattgatagacaatttcacaaacaagaaaggaatgaccagtcactgttacaggattgcttataggtctatggaacgatcacttacagacgaagaagtcaataaattgcagggtactgttcgagagttggttgagagcaagttgaaggttatcttgagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

362

Amino Acids

41.78

Weight (kDa)

5.2

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58140
fragaria_vesca	FvH4_3g12680 FvH4_3g12680 FvH4_3g12680
malus_domestica	MD05G1248600.v1.1 MD10G1229100.v1.1
prunus_persica	Prupe.4G115500_v2.0.a1
pyrus_communis	pycom05g22530 pycom10g19270
rosa_chinensis	RchiOBHm_Chr3g0486261 RchiOBHm_Chr5g0020641
rosa_laevigata	RLG00000023089 RLG00000032549
rosa_multiflora	Rmu_sc0001857.1_g000018 Rmu_sc0005607.1_g000020 Rmu_sc0005842.1_g000003 Rmu_sc0007661.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057630 Rroxscaffold_6G00395930
rosa_rugosa	Rorug03G0224300 Rorug03G0224400 Rorug03G0224500 Rorug05G0062200
rosa_samantha	Rh3AG274300 Rh3BG309600 Rh3CG308800 Rh5AG151900 Rh5BG151600 Rh5CG162900 Rh5DG150800
rosa_wichuraiana	Rw0G022550 Rw3G024320 Rw5G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1022
AccB1I	GGYRCC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccBSI	CCGCTC	1 cut(s)	700
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	3 cut(s)	295, 621, 700
AclWI	GGATC	1 cut(s)	860
AcsI	RAATTY	3 cut(s)	36, 133, 519
AfaI	GTAC	2 cut(s)	293, 1042
AfiI	CCNNNNNNNGG	3 cut(s)	216, 340, 536
AgsI	TTSAA	5 cut(s)	421, 646, 805, 816, 1072
AluBI	AGCT	3 cut(s)	177, 410, 790
AluI	AGCT	3 cut(s)	177, 410, 790
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	2 cut(s)	12, 502
AlwI	GGATC	1 cut(s)	860
AlwNI	CAGNNNCTG	1 cut(s)	972
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	2 cut(s)	377, 787
ApoI	RAATTY	3 cut(s)	36, 133, 519
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	2 cut(s)	411, 918
BbvI	GCAGC	2 cut(s)	389, 799
BccI	CCATC	3 cut(s)	334, 342, 544
BciVI	GTATCC	1 cut(s)	831
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	12, 502
BfuI	GTATCC	1 cut(s)	831
BglII	AGATCT	1 cut(s)	910
BisI	GCNGC	3 cut(s)	378, 701, 788
BlsI	GCNGC	3 cut(s)	379, 702, 789
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	221
BmsI	GCATC	2 cut(s)	382, 459
BpmI	CTGGAG	2 cut(s)	303, 927
Bpu10I	CCTNAGC	2 cut(s)	411, 918
BpuEI	CTTGAG	2 cut(s)	26, 452
BsaI	GGTCTC	1 cut(s)	12
BsaWI	WCCGGW	2 cut(s)	364, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	584, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 340, 536
Bse1I	ACTGG	2 cut(s)	286, 966
Bse3DI	GCAATG	1 cut(s)	714
BseAI	TCCGGA	1 cut(s)	364
BseGI	GGATG	1 cut(s)	723
BseLI	CCNNNNNNNGG	3 cut(s)	216, 340, 536
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	3 cut(s)	402, 785, 909
BseNI	ACTGG	2 cut(s)	286, 966
BseRI	GAGGAG	2 cut(s)	605, 935
BseXI	GCAGC	2 cut(s)	389, 799
BseYI	CCCAGC	2 cut(s)	474, 790
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	365, 587
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	216, 340, 536
BsmAI	GTCTC	2 cut(s)	12, 502
BsmFI	GGGAC	1 cut(s)	400
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	6 cut(s)	103, 160, 505, 852, 910, 1004
BspACI	CCGC	3 cut(s)	295, 621, 700
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	3 cut(s)	403, 784, 910
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	860
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	700
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	2 cut(s)	286, 966
BssMI	GATC	6 cut(s)	103, 160, 505, 852, 910, 1004
Bst4CI	ACNGT	3 cut(s)	211, 974, 1045
Bst6I	CTCTTC	3 cut(s)	10, 564, 641
BstC8I	GCNNGC	2 cut(s)	445, 705
BstDEI	CTNAG	3 cut(s)	411, 771, 918
BstF5I	GGATG	1 cut(s)	723
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	6 cut(s)	106, 163, 508, 855, 913, 1007
BstMAI	GTCTC	2 cut(s)	12, 502
BstMBI	GATC	6 cut(s)	103, 160, 505, 852, 910, 1004
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	389, 799
BstX2I	RGATCY	1 cut(s)	910
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	910
BsuI	GTATCC	1 cut(s)	831
BsuRI	GGCC	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	723
BtsIMutI	CAGTG	3 cut(s)	862, 867, 970
Cac8I	GCNNGC	2 cut(s)	445, 705
CaiI	CAGNNNCTG	1 cut(s)	972
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	292, 1041
CviAII	CATG	2 cut(s)	164, 501
CviJI	RGCY	7 cut(s)	177, 410, 447, 680, 703, 790, 808
CviKI_1	RGCY	7 cut(s)	177, 410, 447, 680, 703, 790, 808
CviQI	GTAC	2 cut(s)	292, 1041
DdeI	CTNAG	3 cut(s)	411, 771, 918
DpnI	GATC	6 cut(s)	105, 162, 507, 854, 912, 1006
DpnII	GATC	6 cut(s)	103, 160, 505, 852, 910, 1004
DrdI	GACNNNNNNGTC	1 cut(s)	1022
DseDI	GACNNNNNNGTC	1 cut(s)	1022
Eam1104I	CTCTTC	3 cut(s)	10, 564, 641
EarI	CTCTTC	3 cut(s)	10, 564, 641
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	36
FaeI	CATG	2 cut(s)	167, 504
FalI	AAGNNNNNCTT	1 cut(s)	1064
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	2 cut(s)	163, 500
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	378, 701, 788
FokI	GGATG	1 cut(s)	710
Fsp4HI	GCNGC	3 cut(s)	378, 701, 788
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	3 cut(s)	378, 701, 788
GsaI	CCCAGC	2 cut(s)	478, 794
GsuI	CTGGAG	2 cut(s)	303, 927
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	2 cut(s)	365, 587
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	167, 504
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	5 cut(s)	200, 302, 311, 795, 860
HpaII	CCGG	2 cut(s)	365, 587
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	4 cut(s)	199, 292, 542, 765
Hpy188I	TCNGA	3 cut(s)	339, 686, 754
Hpy188III	TCNNGA	5 cut(s)	43, 365, 431, 1049, 1081
Hpy8I	GTNNAC	4 cut(s)	199, 292, 542, 765
HpyAV	CCTTC	3 cut(s)	338, 553, 1066
HpyCH4III	ACNGT	3 cut(s)	211, 974, 1045
HpyCH4V	TGCA	5 cut(s)	4, 10, 395, 928, 1036
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	3 cut(s)	411, 771, 918
Hsp92II	CATG	2 cut(s)	167, 504
HspAI	GCGC	1 cut(s)	472
Kpn2I	TCCGGA	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	103, 160, 505, 852, 910, 1004
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	2 cut(s)	389, 799
LweI	GCATC	2 cut(s)	382, 459
MaeIII	GTNAC	5 cut(s)	277, 625, 830, 968, 974
MalI	GATC	6 cut(s)	105, 162, 507, 854, 912, 1006
MbiI	CCGCTC	1 cut(s)	700
MboI	GATC	6 cut(s)	103, 160, 505, 852, 910, 1004
MboII	GAAGA	7 cut(s)	27, 380, 433, 568, 581, 658, 1031
MfeI	CAATTG	1 cut(s)	929
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	8 cut(s)	36, 73, 133, 519, 877, 929, 940, 1031
MlyI	GAGTC	3 cut(s)	194, 305, 804
MmeI	TCCRAC	1 cut(s)	585
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	790
MspI	CCGG	2 cut(s)	365, 587
MunI	CAATTG	1 cut(s)	929
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	6 cut(s)	103, 160, 505, 852, 910, 1004
NlaIII	CATG	2 cut(s)	167, 504
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	968
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	302, 860
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	379, 702, 789
PleI	GAGTC	3 cut(s)	194, 305, 803
PpsI	GAGTC	3 cut(s)	194, 305, 803
PspFI	CCCAGC	2 cut(s)	474, 790
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	584
PstNI	CAGNNNCTG	1 cut(s)	972
PsuI	RGATCY	1 cut(s)	910
PvuII	CAGCTG	1 cut(s)	790
RsaI	GTAC	2 cut(s)	293, 1042
RsaNI	GTAC	2 cut(s)	292, 1041
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	378, 701, 788
Sau3AI	GATC	6 cut(s)	103, 160, 505, 852, 910, 1004
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	3 cut(s)	194, 305, 804
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	2 cut(s)	382, 459
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	3 cut(s)	41, 431, 1081
SmoI	CTYRAG	3 cut(s)	41, 431, 1081
Sse9I	AATT	8 cut(s)	36, 73, 133, 519, 877, 929, 940, 1031
SsiI	CCGC	3 cut(s)	295, 621, 700
SspI	AATATT	1 cut(s)	642
TaaI	ACNGT	3 cut(s)	211, 974, 1045
TaqI	TCGA	5 cut(s)	66, 80, 99, 172, 1048
TasI	AATT	8 cut(s)	36, 73, 133, 519, 877, 929, 940, 1031
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	2 cut(s)	302, 860
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	3 cut(s)	862, 874, 977
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	2 cut(s)	377, 787
Tsp45I	GTSAC	1 cut(s)	968
TspGWI	ACGGA	1 cut(s)	816
TspRI	CASTG	3 cut(s)	862, 874, 977
Van91I	CCANNNNNTGG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	3 cut(s)	36, 133, 519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.