Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004163

Physical Location & Seq

Genomic Coordinates Forward (+)

20595202 .. 20595934

Gene Structure 733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0224500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAAGGAGGCAAGAAAACAAAAGGCAGGCAAAAGATTCCAATAAAAAAGATTGAGAACGCTAACGAACGTCAAGTGACGTTTTGTAAACGAAAATCTGGCGTTATCAAAAAAGCCAGTGAAATGTCGACCCTCACTGGTGCACATGTTGGTTTAGTGATATTCTCCGAGGCCGGGAAACCATACTCTTTCGGCAGTCCCTCTATTGAATCTGTAGCCGGCCGATTCTTGCCGGAGCTACAAAACCAAAACCAAATTAGTGATGATGCCCGTGCTGTACTTGAGGCTAATCGCCAGGCAAGAGTCGATGGTATCCTCAGGATACACAACGACTTAGAAAGCAAGCTGAAAGAAGACAGAGATCGAGCAAAGGAGCTTCGGAAAAGAGAAAGGGCAAGAACAAGCAAAGATCAGGGCGGACCTGGCTGGTGGGAGAAACCTATGGAGGGGCTTGAGTTGGCGGAACTCAAACAGATGCATTCTTCCTATGAACGTCTCCAGAATGATCTATCCTCCTATCTCAAAAGCACCGCCTCTGCTGGTGGCTCCTCATCATCTGCCGGCGCAACCGGTATCCCTCCTGGTACATTGCCTGCACGCTTCGGATTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

204

Amino Acids

22.4

Weight (kDa)

9.68

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	17 - 64	4.4e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58140
fragaria_vesca	FvH4_3g12680 FvH4_3g12680 FvH4_3g12680
malus_domestica	MD05G1248600.v1.1 MD10G1229100.v1.1
prunus_persica	Prupe.4G115500_v2.0.a1
pyrus_communis	pycom05g22530 pycom10g19270
rosa_chinensis	RchiOBHm_Chr3g0486261 RchiOBHm_Chr5g0020641
rosa_laevigata	RLG00000023089 RLG00000032549
rosa_multiflora	Rmu_sc0001857.1_g000018 Rmu_sc0005607.1_g000020 Rmu_sc0005842.1_g000003 Rmu_sc0007661.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057630 Rroxscaffold_6G00395930
rosa_rugosa	Rorug03G0224300 Rorug03G0224400 Rorug03G0224500 Rorug05G0062200
rosa_samantha	Rh3AG274300 Rh3BG309600 Rh3CG308800 Rh5AG151900 Rh5BG151600 Rh5CG162900 Rh5DG150800
rosa_wichuraiana	Rw0G022550 Rw3G024320 Rw5G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	3 cut(s)	417, 461, 531
AcoI	YGGCCR	1 cut(s)	220
AfaI	GTAC	2 cut(s)	279, 586
AfiI	CCNNNNNNNGG	2 cut(s)	174, 446
AflIII	ACRYGT	1 cut(s)	145
AgeI	ACCGGT	1 cut(s)	569
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	3 cut(s)	294, 421, 580
AluBI	AGCT	3 cut(s)	238, 346, 376
AluI	AGCT	3 cut(s)	238, 346, 376
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	500
Alw44I	GTGCAC	1 cut(s)	141
AoxI	GGCC	2 cut(s)	171, 220
ApaLI	GTGCAC	1 cut(s)	141
AsiGI	ACCGGT	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	566
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	145
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	3 cut(s)	296, 423, 582
BciVI	GTATCC	3 cut(s)	315, 323, 584
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	213
BfuI	GTATCC	3 cut(s)	315, 323, 584
Bme1390I	CCNGG	4 cut(s)	175, 296, 423, 582
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	4 cut(s)	175, 296, 423, 582
BmsI	GCATC	2 cut(s)	256, 465
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	482
BpuEI	CTTGAG	2 cut(s)	302, 473
BpuMI	CCSGG	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 446
Bse118I	RCCGGY	3 cut(s)	218, 560, 569
Bse1I	ACTGG	2 cut(s)	117, 142
Bse21I	CCTNAGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	3 cut(s)	296, 423, 582
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	174, 446
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	2 cut(s)	117, 142
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	1 cut(s)	145
BseX3I	CGGCCG	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	579
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	173, 222
BshTI	ACCGGT	1 cut(s)	569
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	5 cut(s)	174, 219, 233, 561, 570
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	174, 446
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	173, 222
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	361, 409, 505
BspACI	CCGC	3 cut(s)	417, 461, 531
BspANI	GGCC	2 cut(s)	173, 222
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	587
BsrFI	RCCGGY	3 cut(s)	218, 560, 569
BsrI	ACTGG	2 cut(s)	117, 142
BssAI	RCCGGY	3 cut(s)	218, 560, 569
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	361, 409, 505
Bst2UI	CCWGG	3 cut(s)	296, 423, 582
BstC8I	GCNNGC	6 cut(s)	29, 220, 344, 562, 594, 598
BstDEI	CTNAG	2 cut(s)	317, 334
BstHHI	GCGC	1 cut(s)	566
BstKTI	GATC	3 cut(s)	364, 412, 508
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	3 cut(s)	361, 409, 505
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstNI	CCWGG	3 cut(s)	296, 423, 582
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	4 cut(s)	173, 294, 421, 580
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	360
BstZI	CGGCCG	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	317
BsuI	GTATCC	3 cut(s)	315, 323, 584
BsuRI	GGCC	2 cut(s)	173, 222
BtsIMutI	CAGTG	2 cut(s)	124, 135
Cac8I	GCNNGC	6 cut(s)	29, 220, 344, 562, 594, 598
CfoI	GCGC	1 cut(s)	566
Cfr10I	RCCGGY	3 cut(s)	218, 560, 569
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	278, 585
CspAI	ACCGGT	1 cut(s)	569
CviAII	CATG	1 cut(s)	146
CviQI	GTAC	2 cut(s)	278, 585
DdeI	CTNAG	2 cut(s)	317, 334
DpnI	GATC	3 cut(s)	363, 411, 507
DpnII	GATC	3 cut(s)	361, 409, 505
EaeI	YGGCCR	1 cut(s)	220
EagI	CGGCCG	1 cut(s)	220
EciI	GGCGGA	2 cut(s)	432, 476
EclXI	CGGCCG	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	419
Eco52I	CGGCCG	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	294, 421, 580
EcoT22I	ATGCAT	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	1 cut(s)	149
FaiI	YATR	4 cut(s)	147, 184, 443, 489
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	128
GlaI	GCGC	1 cut(s)	565
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	173, 222
HapII	CCGG	5 cut(s)	174, 219, 233, 561, 570
HhaI	GCGC	1 cut(s)	566
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	564
HinP1I	GCGC	1 cut(s)	564
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	4 cut(s)	37, 209, 225, 303
HpaII	CCGG	5 cut(s)	174, 219, 233, 561, 570
Hpy166II	GTNNAC	3 cut(s)	89, 129, 143
Hpy188I	TCNGA	3 cut(s)	169, 381, 605
Hpy188III	TCNNGA	2 cut(s)	319, 499
Hpy8I	GTNNAC	3 cut(s)	89, 129, 143
HpyCH4IV	ACGT	3 cut(s)	70, 80, 493
HpyCH4V	TGCA	3 cut(s)	143, 478, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	2 cut(s)	317, 334
HpySE526I	ACGT	3 cut(s)	70, 80, 493
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	564
KroI	GCCGGC	2 cut(s)	218, 560
KroNI	GCCGGC	2 cut(s)	220, 562
Kzo9I	GATC	3 cut(s)	361, 409, 505
LmnI	GCTCC	3 cut(s)	235, 373, 551
LweI	GCATC	2 cut(s)	256, 465
MaeII	ACGT	3 cut(s)	70, 80, 493
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	363, 411, 507
MboI	GATC	3 cut(s)	361, 409, 505
MboII	GAAGA	2 cut(s)	365, 474
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	480
MroNI	GCCGGC	2 cut(s)	218, 560
MspI	CCGG	5 cut(s)	174, 219, 233, 561, 570
MspR9I	CCNGG	4 cut(s)	175, 296, 423, 582
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	3 cut(s)	296, 423, 582
MwoI	GCNNNNNNNGC	1 cut(s)	423
NaeI	GCCGGC	2 cut(s)	220, 562
NciI	CCSGG	1 cut(s)	175
NdeII	GATC	3 cut(s)	361, 409, 505
NgoMIV	GCCGGC	2 cut(s)	218, 560
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	478
PdiI	GCCGGC	2 cut(s)	220, 562
PfeI	GAWTC	3 cut(s)	37, 209, 225
PinAI	ACCGGT	1 cut(s)	569
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PscI	ACATGT	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	294, 421, 580
PspGI	CCWGG	3 cut(s)	294, 421, 580
PspN4I	GGNNCC	1 cut(s)	547
PspPI	GGNCC	1 cut(s)	419
RsaI	GTAC	2 cut(s)	279, 586
RsaNI	GTAC	2 cut(s)	278, 585
SalI	GTCGAC	1 cut(s)	127
Sau3AI	GATC	3 cut(s)	361, 409, 505
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	4 cut(s)	175, 296, 423, 582
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	8 cut(s)	73, 83, 240, 348, 378, 424, 442, 496
SfaNI	GCATC	2 cut(s)	256, 465
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	419
SmlI	CTYRAG	2 cut(s)	281, 452
SmoI	CTYRAG	2 cut(s)	281, 452
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	3 cut(s)	417, 461, 531
StyD4I	CCNGG	4 cut(s)	173, 294, 421, 580
TaiI	ACGT	3 cut(s)	73, 83, 496
TaqI	TCGA	3 cut(s)	128, 306, 364
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	3 cut(s)	37, 209, 225
TscAI	CASTG	2 cut(s)	124, 142
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	2 cut(s)	124, 142
VneI	GTGCAC	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	419
XceI	RCATGY	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.