Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004163

Physical Location & Seq

Genomic Coordinates Forward (+)

6214281 .. 6220798

Gene Structure 6518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGCAACGGCCTTCTCATTTGCGCAGACCATTCTCTTCTCCAAGACCTCACTCTCTATCCGCACAAATGGCCTAAGAAGCTTCTCTTTTTGCCTACCTTTCTCTTCTTCATCAGCTGCATCTATTTCGTCTGATAAGCTTCAAAGCAAGAAGTGGAGACAGCCAGTGGCTTCAGTGCTGGAACTTGGTGGCGTCAAGATTGCTAAAGATGATGTGTTGAGGGATGACCCCACAAACAATGTTCCGGATACCATTTTTGCAAAGCTTGGAATGCAACTCCACAGAAGAGATCAGCACCCAATTGGGATTTTGAAGAATGCTATATACGAGTATTTCGACACCAATTACTCAAATCAGTTCGATAAGTTTGATAATCTTTGTCCAATTGTGTCTGTGAAAGAGAATTTTGACGATGTATTGGTTCCTGCTGATCATGTAAGTCGAAGTTATAATGACACATATTATGTGGACGCTCAAACAGTTTTGAGGTGTCATACAAGCGCACATCAAGCAGAACTACTGAGAAGAGGACATACTCATTTCCTTGTAACAGGAGATGTTTACCGTAGGGATTCCATTGACTCAACTCATTACCCTGTGTTCCATCAGATGGAAGGTGTGCGTGTCTTTTCTCCATCTGATTGGGAGGCATCTGGCACAGATGGCACAACTTATGTTGCTGGGGATTTAAAGAAATGTCTTGAGGGTTTGGCACGCCACTTATTTGGTGCTGTGGAGATGCGCTGGGTTGATACATATTTCCCATTTACCAACCCATCATTTGAACTTGAGATCTTTTTTCAGGAAAAGTGGTTGGAGGTTTTAGGTTGTGGGGTGACAGAACAAGAAATATTAAGGAGAAGTGGCAAAACAGACAATGTTGCTTGGGCTTTTGGACTAGGGTTGGAACGGCTGGCAATGGTTTTATTTGACATCCCTGATATTCGGCTTTTCTGGTCAAATGATGAGAGGTTCACCTCCCAGTTTTCAAGTGGCCAGCTGGGAGTCAAATTCAAGCCATTTTCAAAGTATCCTCCTTGTTACAAAGATGTTAGTTTTTGGATCAATGAAGCTTTCACGGAAAACAATTTATGTGAAGTTGTTAGAGAAGTTGCTGGAGATCTTGCTGAAGAGGTGCAATTGATAGACAATTTCACAAACAAGAAAGGAATGACCAGTCACTGTTACAGGATTGCATATCGATCGATGGAACGCTCACTCACTGATGAAGAAATCAATAAGTTGCAGTGGAATGTAAGAGAGTTGGTGCAGAGCAAGTTGAACGTCGTGCTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

433

Amino Acids

49.47

Weight (kDa)

5.82

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58140
fragaria_vesca	FvH4_3g12680 FvH4_3g12680 FvH4_3g12680
malus_domestica	MD05G1248600.v1.1 MD10G1229100.v1.1
prunus_persica	Prupe.4G115500_v2.0.a1
pyrus_communis	pycom05g22530 pycom10g19270
rosa_chinensis	RchiOBHm_Chr3g0486261 RchiOBHm_Chr5g0020641
rosa_laevigata	RLG00000023089 RLG00000032549
rosa_multiflora	Rmu_sc0001857.1_g000018 Rmu_sc0005607.1_g000020 Rmu_sc0005842.1_g000003 Rmu_sc0007661.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057630 Rroxscaffold_6G00395930
rosa_rugosa	Rorug03G0224300 Rorug03G0224400 Rorug03G0224500 Rorug05G0062200
rosa_samantha	Rh3AG274300 Rh3BG309600 Rh3CG308800 Rh5AG151900 Rh5BG151600 Rh5CG162900 Rh5DG150800
rosa_wichuraiana	Rw0G022550 Rw3G024320 Rw5G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
Acc16I	TGCGCA	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	1070
AcoI	YGGCCR	1 cut(s)	994
AcsI	RAATTY	2 cut(s)	403, 1010
AcuI	CTGAAG	2 cut(s)	156, 1149
AcyI	GRCGYC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	610
AgsI	TTSAA	7 cut(s)	143, 313, 785, 990, 1015, 1026, 1282
AluBI	AGCT	6 cut(s)	81, 116, 139, 265, 1000, 1073
AluI	AGCT	6 cut(s)	81, 116, 139, 265, 1000, 1073
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	1070
AlwNI	CAGNNNCTG	1 cut(s)	1182
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	3 cut(s)	9, 70, 994
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	403, 1010
AspLEI	GCGC	3 cut(s)	25, 503, 744
AsuHPI	GGTGA	2 cut(s)	847, 967
BalI	TGGCCA	1 cut(s)	996
BarI	GAAGNNNNNNTAC	2 cut(s)	517, 549
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	6 cut(s)	604, 612, 643, 656, 784, 1201
BceAI	ACGGC	2 cut(s)	24, 926
BcgI	CGANNNNNNTGC	4 cut(s)	108, 142, 1185, 1219
BciVI	GTATCC	2 cut(s)	241, 1041
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	899
BfuI	GTATCC	2 cut(s)	241, 1041
BglII	AGATCT	2 cut(s)	792, 1120
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	976
BmsI	GCATC	3 cut(s)	128, 659, 729
BmuI	ACTGGG	1 cut(s)	976
BpmI	CTGGAG	1 cut(s)	1137
BpuEI	CTTGAG	2 cut(s)	722, 809
Bsa29I	ATCGAT	2 cut(s)	1201, 1205
BsaHI	GRCGYC	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	610
Bse1I	ACTGG	3 cut(s)	164, 982, 1176
Bse3DI	GCAATG	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	244
BseCI	ATCGAT	2 cut(s)	1201, 1205
BseGI	GGATG	2 cut(s)	229, 933
BseLI	CCNNNNNNNGG	1 cut(s)	610
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	1 cut(s)	512
BseNI	ACTGG	3 cut(s)	164, 982, 1176
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	3 cut(s)	680, 744, 1000
BsgI	GTGCAG	1 cut(s)	1289
Bsh1285I	CGRYCG	1 cut(s)	1205
BshFI	GGCC	3 cut(s)	11, 72, 996
BshVI	ATCGAT	2 cut(s)	1201, 1205
BsiEI	CGRYCG	1 cut(s)	1205
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	610
BsmAI	GTCTC	1 cut(s)	151
BsmI	GAATGC	2 cut(s)	276, 322
BsnI	GGCC	3 cut(s)	11, 72, 996
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	6 cut(s)	289, 430, 792, 1062, 1120, 1202
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	11, 72, 996
BspCNI	CTCAG	1 cut(s)	513
BspDI	ATCGAT	2 cut(s)	1201, 1205
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	1070
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	3 cut(s)	164, 982, 1176
BssMI	GATC	6 cut(s)	289, 430, 792, 1062, 1120, 1202
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	481, 566, 1184
Bst6I	CTCTTC	5 cut(s)	41, 109, 280, 520, 1125
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	715, 915, 998
BstDEI	CTNAG	3 cut(s)	74, 521, 1292
BstF5I	GGATG	2 cut(s)	229, 933
BstHHI	GCGC	3 cut(s)	25, 503, 744
BstKTI	GATC	6 cut(s)	292, 433, 795, 1065, 1123, 1205
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	6 cut(s)	289, 430, 792, 1062, 1120, 1202
BstMCI	CGRYCG	1 cut(s)	1205
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 78, 271, 509, 663
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	792, 1120
BstXI	CCANNNNNNTGG	2 cut(s)	642, 725
BstYI	RGATCY	2 cut(s)	792, 1120
Bsu15I	ATCGAT	2 cut(s)	1201, 1205
BsuI	GTATCC	2 cut(s)	241, 1041
BsuRI	GGCC	3 cut(s)	11, 72, 996
BsuTUI	ATCGAT	2 cut(s)	1201, 1205
BtsCI	GGATG	2 cut(s)	229, 933
BtsI	GCAGTG	1 cut(s)	1253
BtsIMutI	CAGTG	5 cut(s)	171, 180, 1180, 1221, 1253
Cac8I	GCNNGC	3 cut(s)	715, 915, 998
CaiI	CAGNNNCTG	1 cut(s)	1182
CfoI	GCGC	3 cut(s)	25, 503, 744
ClaI	ATCGAT	2 cut(s)	1201, 1205
CseI	GACGC	2 cut(s)	181, 479
CviAII	CATG	1 cut(s)	434
DdeI	CTNAG	3 cut(s)	74, 521, 1292
DpnI	GATC	6 cut(s)	291, 432, 794, 1064, 1122, 1204
DpnII	GATC	6 cut(s)	289, 430, 792, 1062, 1120, 1202
DraI	TTTAAA	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	994
Eam1104I	CTCTTC	5 cut(s)	41, 109, 280, 520, 1125
EarI	CTCTTC	5 cut(s)	41, 109, 280, 520, 1125
Eco57I	CTGAAG	2 cut(s)	156, 1149
FaeI	CATG	1 cut(s)	437
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	236, 920
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	899
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	3 cut(s)	24, 502, 743
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	3 cut(s)	684, 748, 1004
GsuI	CTGGAG	1 cut(s)	1137
HaeIII	GGCC	3 cut(s)	11, 72, 996
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	2 cut(s)	181, 479
HhaI	GCGC	3 cut(s)	25, 503, 744
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	3 cut(s)	23, 501, 742
HinP1I	GCGC	3 cut(s)	23, 501, 742
HindIII	AAGCTT	4 cut(s)	79, 137, 263, 1071
HinfI	GANTC	3 cut(s)	572, 581, 1005
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	847, 967
Hpy166II	GTNNAC	3 cut(s)	469, 562, 975
Hpy188I	TCNGA	3 cut(s)	133, 609, 640
Hpy188III	TCNNGA	4 cut(s)	196, 245, 701, 803
Hpy8I	GTNNAC	3 cut(s)	469, 562, 975
Hpy99I	CGWCG	1 cut(s)	1289
HpyAV	CCTTC	2 cut(s)	22, 608
HpyCH4III	ACNGT	3 cut(s)	481, 566, 1184
HpyCH4IV	ACGT	1 cut(s)	1284
HpyCH4V	TGCA	7 cut(s)	119, 260, 274, 1138, 1196, 1246, 1270
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 78, 271, 509, 663
HpyF3I	CTNAG	3 cut(s)	74, 521, 1292
HpySE526I	ACGT	1 cut(s)	1284
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	3 cut(s)	23, 501, 742
Kpn2I	TCCGGA	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	6 cut(s)	289, 430, 792, 1062, 1120, 1202
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	3 cut(s)	128, 659, 729
MaeI	CTAG	1 cut(s)	899
MaeII	ACGT	1 cut(s)	1284
MaeIII	GTNAC	5 cut(s)	547, 835, 1040, 1178, 1184
MalI	GATC	6 cut(s)	291, 432, 794, 1064, 1122, 1204
MboI	GATC	6 cut(s)	289, 430, 792, 1062, 1120, 1202
MboII	GAAGA	8 cut(s)	28, 96, 99, 297, 325, 537, 1142, 1241
MfeI	CAATTG	3 cut(s)	300, 384, 1139
MflI	RGATCY	2 cut(s)	792, 1120
MlsI	TGGCCA	1 cut(s)	996
MluCI	AATT	8 cut(s)	300, 343, 384, 403, 1010, 1087, 1139, 1150
MluNI	TGGCCA	1 cut(s)	996
MlyI	GAGTC	2 cut(s)	575, 1014
MmeI	TCCRAC	2 cut(s)	795, 885
Mox20I	TGGCCA	1 cut(s)	996
MroI	TCCGGA	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	996
MseI	TTAA	2 cut(s)	689, 854
Msp20I	TGGCCA	1 cut(s)	996
MspA1I	CMGCKG	2 cut(s)	116, 1000
MspI	CCGG	1 cut(s)	245
MunI	CAATTG	3 cut(s)	300, 384, 1139
Mva1269I	GAATGC	2 cut(s)	276, 322
MwoI	GCNNNNNNNGC	5 cut(s)	69, 78, 271, 509, 663
NdeII	GATC	6 cut(s)	289, 430, 792, 1062, 1120, 1202
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	1 cut(s)	423
NmuCI	GTSAC	2 cut(s)	835, 1178
NsbI	TGCGCA	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	2 cut(s)	276, 322
PfeI	GAWTC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	1 cut(s)	118
Ple19I	CGATCG	1 cut(s)	1205
PleI	GAGTC	2 cut(s)	575, 1013
PpsI	GAGTC	2 cut(s)	575, 1013
PsiI	TTATAA	1 cut(s)	450
PspFI	CCCAGC	3 cut(s)	680, 744, 1000
PspN4I	GGNNCC	1 cut(s)	423
PstNI	CAGNNNCTG	1 cut(s)	1182
PsuI	RGATCY	2 cut(s)	792, 1120
PvuI	CGATCG	1 cut(s)	1205
PvuII	CAGCTG	2 cut(s)	116, 1000
SaqAI	TTAA	2 cut(s)	689, 854
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	6 cut(s)	289, 430, 792, 1062, 1120, 1202
SchI	GAGTC	2 cut(s)	575, 1014
SfaNI	GCATC	3 cut(s)	128, 659, 729
SmlI	CTYRAG	2 cut(s)	701, 788
SmoI	CTYRAG	2 cut(s)	701, 788
Sse9I	AATT	8 cut(s)	300, 343, 384, 403, 1010, 1087, 1139, 1150
SsiI	CCGC	1 cut(s)	61
SspI	AATATT	1 cut(s)	852
SspMI	CTAG	1 cut(s)	899
TaaI	ACNGT	3 cut(s)	481, 566, 1184
TaiI	ACGT	1 cut(s)	1287
TaqI	TCGA	5 cut(s)	336, 360, 442, 1201, 1205
TasI	AATT	8 cut(s)	300, 343, 384, 403, 1010, 1087, 1139, 1150
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	689, 854
Tru9I	TTAA	2 cut(s)	689, 854
TscAI	CASTG	5 cut(s)	171, 180, 1187, 1228, 1253
TseFI	GTSAC	2 cut(s)	835, 1178
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	835, 1178
TspDTI	ATGAA	3 cut(s)	99, 1083, 1242
TspGWI	ACGGA	1 cut(s)	1094
TspRI	CASTG	5 cut(s)	171, 180, 1187, 1228, 1253
Van91I	CCANNNNNTGG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	403, 1010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	989
XspI	CTAG	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.