Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007661.1

Orthogroup ID

OG0004163

Physical Location & Seq

Genomic Coordinates Forward (+)

54311 .. 57874

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007661.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atggcaacggccttctcttttgcccaagctgctctcttctccaaaaccccactctctcttcgcaccaatgccctcagaaccttaaccttttgcttacccttctcttcttcttctgcagctcttgcctctgacaagcctcgcagcaagaaatggaggcacccagtaacttcagcagcgctcgagctcggcggcgtcaagattgctagagatgatgtgttgagggatgaccctacaaacaatgttccggatacgatttttgcaaagctcggaatgcaactgcatagaagagaccagcacccacttggaattctcaagaatgctatctacgaatacttcgacaccaattactcgaacaagtttgataagttcgatgatctttgcccacttgtatctgttaaagagaattttgatgatgtattagttcctgctgatcatgtaagtcgaagctataatgatacatactatgtggactctcaaaccgttttgaggtgccatacaagtgctcatcaggcagagttattgagaaaaggacacactcattttcttgtaactggagatgtgtaccgcagggattccattgactctacacattacccggtgttccatcagatggaaggcgttcgtgttttttctccagaagattgggcagcatctgggacagatgcaacatcttatgtagctgaggacttgaagaaatgtcttgagggtctggcacgccacctatttggtgctgtggagatgcgctgggttgatacgtactttccatttaccaatccatcatttgaacttgagattttctttcaggaaaagtggttggaggttttgggttgcggagtaacagaacaagaaatattgaagagaagtgggaaaacagacaatattgcttgggctttcggacttggattggagcggctggcaatggttctatttgacatccctgatattcgccttttctggtcaactgatgagagatttacctctcaggtggttcttgtacccattaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

FDX-ACB tRNA-synt_2d

Protein Analysis

335

Amino Acids

38.08

Weight (kDa)

5.89

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58140
fragaria_vesca	FvH4_3g12680 FvH4_3g12680 FvH4_3g12680
malus_domestica	MD05G1248600.v1.1 MD10G1229100.v1.1
prunus_persica	Prupe.4G115500_v2.0.a1
pyrus_communis	pycom05g22530 pycom10g19270
rosa_chinensis	RchiOBHm_Chr3g0486261 RchiOBHm_Chr5g0020641
rosa_laevigata	RLG00000023089 RLG00000032549
rosa_multiflora	Rmu_sc0001857.1_g000018 Rmu_sc0005607.1_g000020 Rmu_sc0005842.1_g000003 Rmu_sc0007661.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057630 Rroxscaffold_6G00395930
rosa_rugosa	Rorug03G0224300 Rorug03G0224400 Rorug03G0224500 Rorug05G0062200
rosa_samantha	Rh3AG274300 Rh3BG309600 Rh3CG308800 Rh5AG151900 Rh5BG151600 Rh5CG162900 Rh5DG150800
rosa_wichuraiana	Rw0G022550 Rw3G024320 Rw5G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	156, 489
AccB7I	CCANNNNNTGG	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	910
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	4 cut(s)	189, 565, 831, 910
AcsI	RAATTY	2 cut(s)	306, 403
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	563, 758, 996
AfeI	AGCGCT	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	486, 610
AgsI	TTSAA	3 cut(s)	691, 785, 856
AluBI	AGCT	6 cut(s)	29, 119, 184, 265, 447, 680
AluI	AGCT	6 cut(s)	29, 119, 184, 265, 447, 680
Alw21I	GWGCWC	2 cut(s)	186, 505
Alw26I	GTCTC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	244
Aor51HI	AGCGCT	1 cut(s)	177
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	5 cut(s)	29, 116, 141, 173, 647
ApoI	RAATTY	2 cut(s)	306, 403
Asp700I	GAANNNNTTC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	178, 744
AsuC2I	CCSGG	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	156, 489
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	2 cut(s)	186, 505
BbvCI	CCTCAGC	1 cut(s)	681
BbvI	GCAGC	5 cut(s)	16, 128, 153, 185, 659
BccI	CCATC	3 cut(s)	604, 612, 784
BceAI	ACGGC	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 911
BlsI	GCNGC	7 cut(s)	31, 118, 143, 175, 191, 649, 912
Bme1390I	CCNGG	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	158, 491
BmrFI	CCNGG	1 cut(s)	596
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	652, 659, 729
BmuI	ACTGGG	1 cut(s)	155
BpmI	CTGGAG	2 cut(s)	573, 618
Bpu10I	CCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	3 cut(s)	296, 722, 809
BpuMI	CCSGG	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	756
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 610
Bse1I	ACTGG	2 cut(s)	161, 556
Bse3DI	GCAATG	1 cut(s)	924
BseAI	TCCGGA	1 cut(s)	244
BseGI	GGATG	2 cut(s)	229, 933
BseLI	CCNNNNNNNGG	2 cut(s)	486, 610
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	3 cut(s)	88, 672, 995
BseNI	ACTGG	2 cut(s)	161, 556
BseXI	GCAGC	5 cut(s)	16, 128, 153, 185, 659
BseYI	CCCAGC	1 cut(s)	744
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	2 cut(s)	156, 489
BsiHKAI	GWGCWC	2 cut(s)	186, 505
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	245, 596
BslFI	GGGAC	1 cut(s)	670
BslI	CCNNNNNNNGG	2 cut(s)	486, 610
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	670
BsmI	GAATGC	2 cut(s)	276, 322
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	186, 505
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	2 cut(s)	373, 430
BspACI	CCGC	4 cut(s)	189, 565, 831, 910
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	3 cut(s)	87, 673, 994
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	158, 491
BspMAI	CTGCAG	1 cut(s)	118
BspT107I	GGYRCC	2 cut(s)	156, 489
BspTNI	GGTCTC	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	2 cut(s)	161, 556
BssMI	GATC	2 cut(s)	373, 430
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	5 cut(s)	41, 63, 109, 280, 851
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	756
BstC8I	GCNNGC	2 cut(s)	715, 915
BstDEI	CTNAG	3 cut(s)	74, 681, 981
BstF5I	GGATG	2 cut(s)	229, 933
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	178, 744
BstKTI	GATC	2 cut(s)	376, 433
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	2 cut(s)	373, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 122, 271, 509
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	114
BstSNI	TACGTA	1 cut(s)	756
BstV1I	GCAGC	5 cut(s)	16, 128, 153, 185, 659
BstXI	CCANNNNNNTGG	2 cut(s)	642, 725
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	229, 933
Cac8I	GCNNGC	2 cut(s)	715, 915
CaiI	CAGNNNCTG	1 cut(s)	653
CfoI	GCGC	2 cut(s)	178, 744
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	3 cut(s)	562, 757, 995
CviAII	CATG	1 cut(s)	434
CviQI	GTAC	3 cut(s)	562, 757, 995
DdeI	CTNAG	3 cut(s)	74, 681, 981
DpnI	GATC	2 cut(s)	375, 432
DpnII	GATC	2 cut(s)	373, 430
Eam1104I	CTCTTC	5 cut(s)	41, 63, 109, 280, 851
EarI	CTCTTC	5 cut(s)	41, 63, 109, 280, 851
Ecl136II	GAGCTC	1 cut(s)	184
Eco105I	TACGTA	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	282
Eco47III	AGCGCT	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	1 cut(s)	437
FaiI	YATR	7 cut(s)	282, 435, 450, 460, 465, 495, 675
FaqI	GGGAC	1 cut(s)	670
FatI	CATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 911
FokI	GGATG	2 cut(s)	236, 920
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 911
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	177, 743
GluI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 911
GsaI	CCCAGC	1 cut(s)	748
GsuI	CTGGAG	2 cut(s)	573, 618
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	245, 596
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	178, 744
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	2 cut(s)	176, 742
HinP1I	GCGC	2 cut(s)	176, 742
HincII	GTYRAC	1 cut(s)	960
HindII	GTYRAC	1 cut(s)	960
HinfI	GANTC	3 cut(s)	470, 572, 581
HpaII	CCGG	2 cut(s)	245, 596
Hpy166II	GTNNAC	3 cut(s)	469, 562, 960
Hpy188I	TCNGA	5 cut(s)	77, 130, 269, 609, 896
Hpy188III	TCNNGA	6 cut(s)	196, 245, 313, 635, 701, 803
Hpy8I	GTNNAC	3 cut(s)	469, 562, 960
HpyAV	CCTTC	3 cut(s)	22, 109, 608
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	755
HpyCH4V	TGCA	5 cut(s)	116, 260, 274, 280, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 122, 271, 509
HpyF3I	CTNAG	3 cut(s)	74, 681, 981
HpySE526I	ACGT	1 cut(s)	755
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	2 cut(s)	176, 742
Kpn2I	TCCGGA	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	373, 430
LmnI	GCTCC	1 cut(s)	907
Lsp1109I	GCAGC	5 cut(s)	16, 128, 153, 185, 659
LweI	GCATC	3 cut(s)	652, 659, 729
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	755
MaeIII	GTNAC	3 cut(s)	163, 547, 835
MalI	GATC	2 cut(s)	375, 432
MbiI	CCGCTC	1 cut(s)	910
MboI	GATC	2 cut(s)	373, 430
MboII	GAAGA	9 cut(s)	28, 50, 96, 99, 102, 297, 650, 703, 868
MhlI	GDGCHC	2 cut(s)	186, 505
MluCI	AATT	3 cut(s)	306, 343, 403
MlyI	GAGTC	2 cut(s)	464, 575
MmeI	TCCRAC	1 cut(s)	795
MroI	TCCGGA	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	3 cut(s)	83, 396, 1002
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	2 cut(s)	245, 596
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	2 cut(s)	276, 322
MwoI	GCNNNNNNNGC	4 cut(s)	29, 122, 271, 509
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	2 cut(s)	373, 430
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	2 cut(s)	158, 491
NmeAIII	GCCGAG	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	2 cut(s)	276, 322
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	572
PflMI	CCANNNNNTGG	1 cut(s)	610
PkrI	GCNGC	7 cut(s)	31, 118, 143, 175, 191, 649, 912
PleI	GAGTC	2 cut(s)	464, 575
PpsI	GAGTC	2 cut(s)	464, 575
Ppu21I	YACGTR	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	744
PspN4I	GGNNCC	2 cut(s)	158, 491
PspXI	VCTCGAGB	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	653
RsaI	GTAC	3 cut(s)	563, 758, 996
RsaNI	GTAC	3 cut(s)	562, 757, 995
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	83, 396, 1002
SatI	GCNGC	7 cut(s)	30, 117, 142, 174, 190, 648, 911
Sau3AI	GATC	2 cut(s)	373, 430
SchI	GAGTC	2 cut(s)	464, 575
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	186, 505
SfaNI	GCATC	3 cut(s)	652, 659, 729
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	179
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	4 cut(s)	179, 311, 701, 788
SmoI	CTYRAG	4 cut(s)	179, 311, 701, 788
SnaBI	TACGTA	1 cut(s)	756
Sse9I	AATT	3 cut(s)	306, 343, 403
SsiI	CCGC	4 cut(s)	189, 565, 831, 910
SspI	AATATT	2 cut(s)	852, 880
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	758
TaqI	TCGA	5 cut(s)	180, 336, 350, 369, 442
TasI	AATT	3 cut(s)	306, 343, 403
TauI	GCSGC	2 cut(s)	192, 913
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	3 cut(s)	83, 396, 1002
Tru9I	TTAA	3 cut(s)	83, 396, 1002
TseI	GCWGC	5 cut(s)	29, 116, 141, 173, 647
Van91I	CCANNNNNTGG	1 cut(s)	610
XapI	RAATTY	2 cut(s)	306, 403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.