Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Forward (+)

21543954 .. 21546180

Gene Structure 2227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAATCTAATGGATCAGTTTCATCGATGGTTAACTTGGAGAAGTTTCTCTGTGAGCGATTGGTGGACCAGTCACAACCAATCTCGGAGCGATTTAGAGCTCTCTTCTCTCTTCGCAACTTGAAAGGCCCAGGACCTCGCAACGCTCTAATCCTTGCATCCAGAGACTCATCTAATTTGTTAGCACATGAAGCTGCATTTGCATTGGGTCAGATGCAAGATGCTGAAGCCATTCCTGCTCTTGAGTCGGTTCTTAATGATATGTCTTTGCATCCAATAGTACGACATGAGGCAGCAGAAGCCCTTGGAGCTATTGGTTTGGCGGGTAATGTTAACATTTTAAAGAAAAGCTTGAGCTCGGATCCAGCTCAGGAGGTTCGGGAAACATGTGAATTAGCTCTCAAAAGGATTGAAGACATGAGTAACGTTGATGCCGAGAACCAGTCATCAACGACAGAGAAATCACCTTTCATGTCTGTTGACCCAGCAGGCCCAGCTGCGTCTTTCTCTTCTGTTCACCAACTCAGGCAAGTTCTCCTGGATGAAACAAAAGGCATGTATGAGAGATATGCTGCACTGTTCGCTCTAAGGAATCATGGTGGAGAGGAAGCTGTTTCTGCCATAGTTGATTCTTTGAGTGCTAGTAGTGCCCTTCTACGTCACGAGGTTGCTTATGTCTTGGGTCAGTTGCAAAGTAAAACTGCTTTAGCTACTCTAAGCAAAGTACTTAGAGATGTGAATGAGCACCCAATGGTTAGACATGAGGCTGCAGAAGCGCTTGGTTCTATTGCTGATGAACAGAGCATTGCTTTGCTAGAAGAATTCTCAAAGGACCCTGAGCCAATTGTTGCACAAAGCTGTGAAGTAGCATTGAGTATGTTGGAATTTGAAAATTCCGGGAAATCGTTTGAGTTTTTTTTCACGCAAGACCCGCTTGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

314

Amino Acids

34.09

Weight (kDa)

4.86

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	52 - 135	8.2e-15	HEAT repeats
HEAT_PBS	PF03130	62 - 87	9.4e-06	PBS lyase HEAT-like repeat
HEAT_2	PF13646	187 - 245	9.1e-07	HEAT repeats
HEAT_2	PF13646	213 - 291	8.4e-14	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	323, 932
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	3 cut(s)	22, 356, 369
AcsI	RAATTY	3 cut(s)	821, 884, 892
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	282, 726
AfeI	AGCGCT	1 cut(s)	777
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	124, 413, 890
AjnI	CCWGG	2 cut(s)	130, 537
Alw21I	GWGCWC	3 cut(s)	103, 359, 747
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	3 cut(s)	22, 356, 369
Aor51HI	AGCGCT	1 cut(s)	777
AoxI	GGCC	2 cut(s)	127, 490
ApeKI	GCWGC	5 cut(s)	194, 293, 497, 572, 767
ApoI	RAATTY	3 cut(s)	821, 884, 892
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	5 cut(s)	67, 128, 134, 491, 832
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	2 cut(s)	456, 509
AvaII	GGWCC	3 cut(s)	67, 134, 832
BaeGI	GKGCMC	1 cut(s)	652
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	103, 359
BauI	CACGAG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	3 cut(s)	103, 359, 747
BbvI	GCAGC	5 cut(s)	181, 305, 484, 559, 754
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	132, 539
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	642, 815
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	779
BisI	GCNGC	5 cut(s)	195, 294, 498, 573, 768
BlsI	GCNGC	5 cut(s)	196, 295, 499, 574, 769
BmcAI	AGTACT	1 cut(s)	726
Bme1390I	CCNGG	3 cut(s)	132, 539, 898
Bme18I	GGWCC	3 cut(s)	67, 134, 832
BmgT120I	GGNCC	5 cut(s)	67, 128, 134, 491, 832
BmiI	GGNNCC	2 cut(s)	363, 834
BmrFI	CCNGG	3 cut(s)	132, 539, 898
BmsI	GCATC	5 cut(s)	167, 204, 211, 280, 421
BpiI	GAAGAC	1 cut(s)	420
Bpu10I	CCTNAGC	2 cut(s)	369, 837
BpuEI	CTTGAG	2 cut(s)	263, 373
BpuMI	CCSGG	1 cut(s)	898
Bsa29I	ATCGAT	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	130, 304
Bse1I	ACTGG	2 cut(s)	70, 442
Bse3DI	GCAATG	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	132, 539
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	130, 304
BseGI	GGATG	3 cut(s)	158, 271, 547
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	3 cut(s)	383, 538, 828
BseNI	ACTGG	2 cut(s)	70, 442
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	5 cut(s)	181, 305, 484, 559, 754
BseYI	CCCAGC	2 cut(s)	484, 493
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	129, 492
BshVI	ATCGAT	1 cut(s)	26
BsiHKAI	GWGCWC	3 cut(s)	103, 359, 747
BsiSI	CCGG	1 cut(s)	897
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	129, 492
Bsp1286I	GDGCHC	4 cut(s)	103, 359, 652, 747
Bsp143I	GATC	2 cut(s)	14, 361
BspACI	CCGC	2 cut(s)	323, 932
BspANI	GGCC	2 cut(s)	129, 492
BspCNI	CTCAG	3 cut(s)	382, 537, 829
BspDI	ATCGAT	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	363, 834
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	3 cut(s)	22, 356, 369
BsrDI	GCAATG	1 cut(s)	804
BsrI	ACTGG	2 cut(s)	70, 442
BssECI	CCNNGG	2 cut(s)	130, 304
BssMI	GATC	2 cut(s)	14, 361
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	304
Bst2BI	CACGAG	1 cut(s)	662
Bst2UI	CCWGG	2 cut(s)	132, 539
Bst4CI	ACNGT	1 cut(s)	579
Bst6I	CTCTTC	3 cut(s)	110, 117, 514
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	6 cut(s)	369, 524, 587, 716, 728, 837
BstF5I	GGATG	3 cut(s)	158, 271, 547
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	2 cut(s)	17, 364
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	2 cut(s)	14, 361
BstNI	CCWGG	2 cut(s)	132, 539
BstNSI	RCATGY	2 cut(s)	390, 559
BstSCI	CCNGG	3 cut(s)	130, 537, 896
BstSFI	CTRYAG	1 cut(s)	768
BstSLI	GKGCMC	1 cut(s)	652
BstV1I	GCAGC	5 cut(s)	181, 305, 484, 559, 754
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	129, 492
BsuTUI	ATCGAT	1 cut(s)	26
BtsCI	GGATG	3 cut(s)	158, 271, 547
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	1 cut(s)	778
Cfr13I	GGNCC	5 cut(s)	67, 128, 134, 491, 832
ClaI	ATCGAT	1 cut(s)	26
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	281, 725
CviAII	CATG	8 cut(s)	188, 287, 387, 418, 472, 556, 596, 761
CviQI	GTAC	2 cut(s)	281, 725
DdeI	CTNAG	6 cut(s)	369, 524, 587, 716, 728, 837
DpnI	GATC	2 cut(s)	16, 363
DpnII	GATC	2 cut(s)	14, 361
DraI	TTTAAA	1 cut(s)	342
Eam1104I	CTCTTC	3 cut(s)	110, 117, 514
EarI	CTCTTC	3 cut(s)	110, 117, 514
Ecl136II	GAGCTC	2 cut(s)	101, 357
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	103, 359
Eco47I	GGWCC	3 cut(s)	67, 134, 832
Eco47III	AGCGCT	1 cut(s)	777
Eco53kI	GAGCTC	2 cut(s)	101, 357
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	2 cut(s)	101, 357
EcoO109I	RGGNCCY	2 cut(s)	134, 832
EcoRI	GAATTC	1 cut(s)	821
EcoRII	CCWGG	2 cut(s)	130, 537
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	103, 359
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	8 cut(s)	191, 290, 390, 421, 475, 559, 599, 764
FalI	AAGNNNNNCTT	3 cut(s)	335, 367, 918
FatI	CATG	8 cut(s)	187, 286, 386, 417, 471, 555, 595, 760
FauI	CCCGC	2 cut(s)	316, 939
Fnu4HI	GCNGC	5 cut(s)	195, 294, 498, 573, 768
FokI	GGATG	3 cut(s)	145, 258, 554
FriOI	GRGCYC	2 cut(s)	103, 359
Fsp4HI	GCNGC	5 cut(s)	195, 294, 498, 573, 768
FspBI	CTAG	2 cut(s)	642, 815
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	5 cut(s)	195, 294, 498, 573, 768
GsaI	CCCAGC	2 cut(s)	488, 497
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	2 cut(s)	129, 492
HapII	CCGG	1 cut(s)	897
HgaI	GACGC	1 cut(s)	489
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	8 cut(s)	191, 290, 390, 421, 475, 559, 599, 764
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	3 cut(s)	34, 334, 481
HindII	GTYRAC	3 cut(s)	34, 334, 481
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	5 cut(s)	5, 167, 245, 592, 629
HpaI	GTTAAC	2 cut(s)	34, 334
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	2 cut(s)	456, 509
Hpy166II	GTNNAC	6 cut(s)	34, 67, 334, 481, 517, 940
Hpy188I	TCNGA	3 cut(s)	88, 213, 361
Hpy188III	TCNNGA	5 cut(s)	162, 242, 371, 380, 662
Hpy8I	GTNNAC	6 cut(s)	34, 67, 334, 481, 517, 940
HpyAV	CCTTC	1 cut(s)	662
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	2 cut(s)	426, 658
HpyCH4V	TGCA	9 cut(s)	158, 197, 203, 217, 271, 575, 691, 770, 851
HpyF3I	CTNAG	6 cut(s)	369, 524, 587, 716, 728, 837
HpySE526I	ACGT	2 cut(s)	426, 658
Hsp92II	CATG	8 cut(s)	191, 290, 390, 421, 475, 559, 599, 764
HspAI	GCGC	1 cut(s)	776
KspAI	GTTAAC	2 cut(s)	34, 334
Kzo9I	GATC	2 cut(s)	14, 361
LmnI	GCTCC	2 cut(s)	88, 308
Lsp1109I	GCAGC	5 cut(s)	181, 305, 484, 559, 754
LweI	GCATC	5 cut(s)	167, 204, 211, 280, 421
MaeI	CTAG	2 cut(s)	642, 815
MaeII	ACGT	2 cut(s)	426, 658
MaeIII	GTNAC	3 cut(s)	72, 422, 659
MalI	GATC	2 cut(s)	16, 363
MboI	GATC	2 cut(s)	14, 361
MboII	GAAGA	5 cut(s)	97, 104, 425, 501, 830
MfeI	CAATTG	1 cut(s)	843
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	4 cut(s)	103, 359, 652, 747
MluCI	AATT	6 cut(s)	175, 392, 821, 843, 884, 892
MlyI	GAGTC	2 cut(s)	161, 254
MmeI	TCCRAC	1 cut(s)	861
MnlI	CCTC	6 cut(s)	147, 283, 367, 598, 658, 757
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	4 cut(s)	33, 255, 333, 341
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	3 cut(s)	132, 539, 898
MunI	CAATTG	1 cut(s)	843
MvaI	CCWGG	2 cut(s)	132, 539
NciI	CCSGG	1 cut(s)	898
NdeII	GATC	2 cut(s)	14, 361
NlaIII	CATG	8 cut(s)	191, 290, 390, 421, 475, 559, 599, 764
NlaIV	GGNNCC	2 cut(s)	363, 834
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	2 cut(s)	72, 659
NspI	RCATGY	2 cut(s)	390, 559
PciI	ACATGT	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	5, 592, 629
PfoI	TCCNGGA	2 cut(s)	537, 896
PkrI	GCNGC	5 cut(s)	196, 295, 499, 574, 769
PleI	GAGTC	2 cut(s)	161, 253
PpsI	GAGTC	2 cut(s)	161, 253
PpuMI	RGGWCCY	2 cut(s)	134, 832
PscI	ACATGT	1 cut(s)	386
Psp124BI	GAGCTC	2 cut(s)	103, 359
Psp1406I	AACGTT	1 cut(s)	426
Psp5II	RGGWCCY	2 cut(s)	134, 832
Psp6I	CCWGG	2 cut(s)	130, 537
PspFI	CCCAGC	2 cut(s)	484, 493
PspGI	CCWGG	2 cut(s)	130, 537
PspN4I	GGNNCC	2 cut(s)	363, 834
PspPI	GGNCC	5 cut(s)	67, 128, 134, 491, 832
PspPPI	RGGWCCY	2 cut(s)	134, 832
PstI	CTGCAG	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	282, 726
RsaNI	GTAC	2 cut(s)	281, 725
SacI	GAGCTC	2 cut(s)	103, 359
SaqAI	TTAA	4 cut(s)	33, 255, 333, 341
SatI	GCNGC	5 cut(s)	195, 294, 498, 573, 768
Sau3AI	GATC	2 cut(s)	14, 361
Sau96I	GGNCC	5 cut(s)	67, 128, 134, 491, 832
ScaI	AGTACT	1 cut(s)	726
SchI	GAGTC	2 cut(s)	161, 254
ScrFI	CCNGG	3 cut(s)	132, 539, 898
SduI	GDGCHC	4 cut(s)	103, 359, 652, 747
SfaNI	GCATC	5 cut(s)	167, 204, 211, 280, 421
SfcI	CTRYAG	1 cut(s)	768
SinI	GGWCC	3 cut(s)	67, 134, 832
SmlI	CTYRAG	2 cut(s)	242, 352
SmoI	CTYRAG	2 cut(s)	242, 352
Sse9I	AATT	6 cut(s)	175, 392, 821, 843, 884, 892
SsiI	CCGC	2 cut(s)	323, 932
SspMI	CTAG	2 cut(s)	642, 815
SstI	GAGCTC	2 cut(s)	103, 359
StyD4I	CCNGG	3 cut(s)	130, 537, 896
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	2 cut(s)	429, 661
TaqI	TCGA	1 cut(s)	26
TasI	AATT	6 cut(s)	175, 392, 821, 843, 884, 892
TatI	WGTACW	1 cut(s)	724
TfiI	GAWTC	3 cut(s)	5, 592, 629
Tru1I	TTAA	4 cut(s)	33, 255, 333, 341
Tru9I	TTAA	4 cut(s)	33, 255, 333, 341
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	2 cut(s)	72, 659
TseI	GCWGC	5 cut(s)	194, 293, 497, 572, 767
Tsp45I	GTSAC	2 cut(s)	72, 659
TspDTI	ATGAA	5 cut(s)	12, 204, 460, 558, 810
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	3 cut(s)	67, 134, 832
XapI	RAATTY	3 cut(s)	821, 884, 892
XceI	RCATGY	2 cut(s)	390, 559
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	2 cut(s)	642, 815
ZrmI	AGTACT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.