Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Reverse (-)

32845736 .. 32848275

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1201100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTTCATTGAATGATGACGCTGCCGCCACCACCGCCACCAGCTTCGAGTCCTCACCGGAGATGGTGACGTTCCTATGCGACCGGTTGCTCGACCCGACCCAGCCCATCTCGGAGCGCTTCAGAGCCTTGTTCTCTCTCCGCAACCTCAAAGGCCCTGCCCCTCGCGACGCCCTCATTGCCGCAACAAGAGATTCTTCCAATTTGTTGGCACATGAGGCAGCATTTGCATTGGGTCAAATGCAAGATGTGGATGCAATCCCTGCCTTGGTAGCCGTTCTCAATGATCTCTCTTTGCATCCCATTGTTCGTCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTAGAGAGCAATGTTCCTCTTTTGAAGAATAGTCTAGCACTAGATCCCGCTCAGGAGGTCAAAGAAACTTGTGAATTGGCCCTTAATCGGATTGAGCAGTTGAAGGATGCTGATTGTCAATCGAAGGATGAAAAATCACCTTTTATGTCAGTTGATCCTGCTGCACCAGCTACTTCTGGTTCTTCTGTCTATCAGCTAAGGGAAGTTCTTCTGGATGTAAACAAAAGTATGTATGAGCGCTATGCGGCTCTCTTTGCTCTGCGGAATGATGGTGGAGATGAAGCTGTTACTGCCATAGTTGATTCCTTGGGTTCAAACAGTGCTCTCTTGCGTCACGAGGTTGCTTATGTGTTAGGCCAATTGCAGAACAAAGCTGCTTCGGCTGCTCTTTCCAACATACTTATGAATAGAAATGAGCACCCAATGGTTAGACATGAAGCTGCAGAAGCTCTTGGTTCCATTGCAGATGACCAAAGTGTATCACTTCTCGAAGAATTTGCGAGGGATCCTGAACCAATTGTGTCACAGAGTTGCGAAGTTGCTCTAAGCATGCTGGAATTTGAGAGATCAGGAAAATCCTTCGAGTACCTCTTCATGCAAGCTCCTCTAGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

321

Amino Acids

34.58

Weight (kDa)

4.57

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	25 - 96	1.5e-06	HEAT repeats
HEAT_2	PF13646	57 - 143	2.9e-14	HEAT repeats
HEAT_PBS	PF03130	71 - 96	1e-05	PBS lyase HEAT-like repeat
HEAT_2	PF13646	238 - 297	9.4e-08	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	395
AccII	CGCG	1 cut(s)	168
AciI	CCGC	7 cut(s)	27, 36, 142, 183, 393, 590, 607
AclWI	GGATC	4 cut(s)	383, 494, 845, 858
AcsI	RAATTY	2 cut(s)	839, 902
AcuI	CTGAAG	1 cut(s)	106
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	932
AfeI	AGCGCT	2 cut(s)	119, 584
AfiI	CCNNNNNNNGG	2 cut(s)	268, 432
AgeI	ACCGGT	1 cut(s)	84
AgsI	TTSAA	4 cut(s)	13, 370, 448, 660
AluBI	AGCT	9 cut(s)	45, 329, 515, 541, 629, 719, 785, 794, 947
AluI	AGCT	9 cut(s)	45, 329, 515, 541, 629, 719, 785, 794, 947
Alw21I	GWGCWC	2 cut(s)	670, 765
AlwI	GGATC	4 cut(s)	383, 494, 845, 858
Aor51HI	AGCGCT	2 cut(s)	119, 584
AoxI	GGCC	3 cut(s)	154, 423, 700
ApeKI	GCWGC	7 cut(s)	23, 221, 320, 506, 719, 728, 785
ApoI	RAATTY	2 cut(s)	839, 902
AsiGI	ACCGGT	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	2 cut(s)	120, 585
AspS9I	GGNCC	2 cut(s)	155, 424
AsuHPI	GGTGA	3 cut(s)	48, 79, 474
BamHI	GGATCC	1 cut(s)	850
BauI	CACGAG	1 cut(s)	680
Bbv12I	GWGCWC	2 cut(s)	670, 765
BbvI	GCAGC	7 cut(s)	10, 233, 332, 493, 706, 715, 772
BccI	CCATC	3 cut(s)	58, 116, 608
BceAI	ACGGC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	824, 858
BfaI	CTAG	3 cut(s)	380, 386, 953
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	2 cut(s)	121, 586
BmgT120I	GGNCC	2 cut(s)	155, 424
BmiI	GGNNCC	2 cut(s)	802, 852
BmsI	GCATC	3 cut(s)	244, 307, 442
Bpu10I	CCTNAGC	2 cut(s)	396, 542
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	267, 651
BsaWI	WCCGGW	2 cut(s)	58, 84
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 432
Bse118I	RCCGGY	1 cut(s)	84
Bse3DI	GCAATG	3 cut(s)	177, 361, 804
BseDI	CCNNGG	2 cut(s)	267, 651
BseGI	GGATG	5 cut(s)	259, 298, 457, 478, 565
BseLI	CCNNNNNNNGG	2 cut(s)	268, 432
BseMI	GCAATG	3 cut(s)	177, 361, 804
BseMII	CTCAG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	939
BseXI	GCAGC	7 cut(s)	10, 233, 332, 493, 706, 715, 772
BseYI	CCCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	156, 425, 702
BshTI	ACCGGT	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	85
BsiHKAI	GWGCWC	2 cut(s)	670, 765
BsiSI	CCGG	2 cut(s)	59, 85
BslI	CCNNNNNNNGG	2 cut(s)	268, 432
BsnI	GGCC	3 cut(s)	156, 425, 702
Bsp1286I	GDGCHC	2 cut(s)	670, 765
Bsp143I	GATC	5 cut(s)	286, 388, 499, 850, 911
Bsp68I	TCGCGA	1 cut(s)	168
BspACI	CCGC	7 cut(s)	27, 36, 142, 183, 393, 590, 607
BspANI	GGCC	3 cut(s)	156, 425, 702
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	802, 852
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	4 cut(s)	383, 494, 845, 858
BsrBI	CCGCTC	1 cut(s)	395
BsrDI	GCAATG	3 cut(s)	177, 361, 804
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	267, 651
BssMI	GATC	5 cut(s)	286, 388, 499, 850, 911
BssNI	GRCGYC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	2 cut(s)	267, 651
Bst2BI	CACGAG	1 cut(s)	680
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	1 cut(s)	941
BstACI	GRCGYC	1 cut(s)	171
BstAPI	GCANNNNNTGC	2 cut(s)	227, 263
BstC8I	GCNNGC	2 cut(s)	896, 945
BstDEI	CTNAG	3 cut(s)	396, 542, 890
BstF5I	GGATG	5 cut(s)	259, 298, 457, 478, 565
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	2 cut(s)	121, 586
BstHHI	GCGC	2 cut(s)	120, 585
BstKTI	GATC	5 cut(s)	289, 391, 502, 853, 914
BstMBI	GATC	5 cut(s)	286, 388, 499, 850, 911
BstMCI	CGRYCG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	898
BstSFI	CTRYAG	1 cut(s)	786
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	7 cut(s)	10, 233, 332, 493, 706, 715, 772
BstX2I	RGATCY	2 cut(s)	388, 850
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	2 cut(s)	388, 850
BsuRI	GGCC	3 cut(s)	156, 425, 702
BtsCI	GGATG	5 cut(s)	259, 298, 457, 478, 565
BtsIMutI	CAGTG	1 cut(s)	670
BtuMI	TCGCGA	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	896, 945
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	2 cut(s)	120, 585
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	155, 424
CseI	GACGC	3 cut(s)	29, 179, 665
Csp6I	GTAC	1 cut(s)	931
CspAI	ACCGGT	1 cut(s)	84
CviAII	CATG	5 cut(s)	215, 314, 779, 895, 940
CviQI	GTAC	1 cut(s)	931
DdeI	CTNAG	3 cut(s)	396, 542, 890
DpnI	GATC	5 cut(s)	288, 390, 501, 852, 913
DpnII	GATC	5 cut(s)	286, 388, 499, 850, 911
Eam1104I	CTCTTC	1 cut(s)	941
EarI	CTCTTC	1 cut(s)	941
Eco130I	CCWWGG	2 cut(s)	267, 651
Eco47III	AGCGCT	2 cut(s)	119, 584
Eco57I	CTGAAG	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	267, 651
ErhI	CCWWGG	2 cut(s)	267, 651
FaeI	CATG	5 cut(s)	218, 317, 782, 898, 943
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FatI	CATG	5 cut(s)	214, 313, 778, 894, 939
FauI	CCCGC	1 cut(s)	400
FokI	GGATG	5 cut(s)	266, 285, 464, 485, 572
FspBI	CTAG	3 cut(s)	380, 386, 953
GlaI	GCGC	2 cut(s)	119, 584
GsaI	CCCAGC	1 cut(s)	106
HaeII	RGCGCY	2 cut(s)	121, 586
HaeIII	GGCC	3 cut(s)	156, 425, 702
HapII	CCGG	2 cut(s)	59, 85
HgaI	GACGC	3 cut(s)	29, 179, 665
HhaI	GCGC	2 cut(s)	120, 585
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	5 cut(s)	218, 317, 782, 898, 943
Hin6I	GCGC	2 cut(s)	118, 583
HinP1I	GCGC	2 cut(s)	118, 583
HinfI	GANTC	3 cut(s)	50, 194, 647
HpaII	CCGG	2 cut(s)	59, 85
HphI	GGTGA	3 cut(s)	48, 79, 474
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	3 cut(s)	115, 125, 435
Hpy188III	TCNNGA	8 cut(s)	167, 314, 398, 557, 680, 833, 854, 915
Hpy8I	GTNNAC	1 cut(s)	565
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	442, 463, 934
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	1 cut(s)	71
HpyF3I	CTNAG	3 cut(s)	396, 542, 890
HpySE526I	ACGT	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	218, 317, 782, 898, 943
HspAI	GCGC	2 cut(s)	118, 583
Kzo9I	GATC	5 cut(s)	286, 388, 499, 850, 911
LmnI	GCTCC	2 cut(s)	115, 952
Lsp1109I	GCAGC	7 cut(s)	10, 233, 332, 493, 706, 715, 772
LweI	GCATC	3 cut(s)	244, 307, 442
MaeI	CTAG	3 cut(s)	380, 386, 953
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	4 cut(s)	67, 631, 677, 867
MalI	GATC	5 cut(s)	288, 390, 501, 852, 913
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	5 cut(s)	286, 388, 499, 850, 911
MboII	GAAGA	6 cut(s)	189, 382, 519, 545, 848, 928
MfeI	CAATTG	3 cut(s)	339, 704, 861
MflI	RGATCY	2 cut(s)	388, 850
MhlI	GDGCHC	2 cut(s)	670, 765
MluCI	AATT	7 cut(s)	202, 339, 419, 704, 839, 861, 902
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	746
MspI	CCGG	2 cut(s)	59, 85
MunI	CAATTG	3 cut(s)	339, 704, 861
MvnI	CGCG	1 cut(s)	168
NdeII	GATC	5 cut(s)	286, 388, 499, 850, 911
NlaIII	CATG	5 cut(s)	218, 317, 782, 898, 943
NlaIV	GGNNCC	2 cut(s)	802, 852
NmuCI	GTSAC	3 cut(s)	67, 677, 867
NruI	TCGCGA	1 cut(s)	168
NspI	RCATGY	1 cut(s)	898
PaeI	GCATGC	1 cut(s)	898
PagI	TCATGA	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	194, 647
PinAI	ACCGGT	1 cut(s)	84
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	802, 852
PspPI	GGNCC	2 cut(s)	155, 424
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	2 cut(s)	388, 850
RruI	TCGCGA	1 cut(s)	168
RsaI	GTAC	1 cut(s)	932
RsaNI	GTAC	1 cut(s)	931
RseI	CAYNNNNRTG	1 cut(s)	746
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	5 cut(s)	286, 388, 499, 850, 911
Sau96I	GGNCC	2 cut(s)	155, 424
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	2 cut(s)	670, 765
SfaNI	GCATC	3 cut(s)	244, 307, 442
SfcI	CTRYAG	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	746
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	7 cut(s)	202, 339, 419, 704, 839, 861, 902
SsiI	CCGC	7 cut(s)	27, 36, 142, 183, 393, 590, 607
SspMI	CTAG	3 cut(s)	380, 386, 953
StyI	CCWWGG	2 cut(s)	267, 651
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	5 cut(s)	48, 93, 467, 834, 927
TasI	AATT	7 cut(s)	202, 339, 419, 704, 839, 861, 902
TauI	GCSGC	3 cut(s)	29, 185, 593
TfiI	GAWTC	2 cut(s)	194, 647
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	3 cut(s)	67, 677, 867
TseI	GCWGC	7 cut(s)	23, 221, 320, 506, 719, 728, 785
Tsp45I	GTSAC	3 cut(s)	67, 677, 867
TspDTI	ATGAA	5 cut(s)	489, 639, 764, 795, 928
TspRI	CASTG	1 cut(s)	670
XapI	RAATTY	2 cut(s)	839, 902
XceI	RCATGY	1 cut(s)	898
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	3 cut(s)	380, 386, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.