Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Reverse (-)

50995666 .. 50998869

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTTCGTTGAGCGACGACGGCGCTCCCGCCACCGGGTTCGAGTCGTCACCGGAGATGGTGAAGTTTCTCTGCGACAGATTGCTGGACCCGGCGCAGCCCATATCGGAGCGGTTCAGAGCCTTGTTCTCTCTCCGCAACCTCAAAGGCCCTGCCCCGCGCAACGCCCTTATTACCGCAACAAGGGATTCTTCCAACTTGTTGGCACATGAGGCTGCATTTGCATTGGGTCAAATGCAAGACGCCGAGGCAATTCCTGCATTGATAGCGGTTCTCAATGATTTCTCTCTGCATCCCATTGTTCGTCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTGGAGAGCAATATTCCTCTTTTAAAGAATAGTCTGGTTTCAGATCCAGCTCAGGAGGTAAAAGAGACTTGTGAGTTGGCTCTTAATCGAATTGAGCAGTTTAAGAATGCTAGTAGTCAATCCATGGATGAAAAATCACCTTTTATGTCTGTGGATCCGGCTGCACCGGCTACTTCTGGCTCTTCTGTAAATCAGCTAAGGGAAGCTCTTCTGGATGAAAAAAGGAGTATGTATGAGCGGTATTCAGCTCTCTTTGCACTTCGGAATGATGGTGGTGATGAAGCTGTTACTGCTATAATTGATTCCTTGGGTTCCCAAAGTGCTCTCTTGCGGCACGAGGTTGCTTATGTGTTGGGCCAATTACAAGATAAAGCTGCTTCAGCTGCTCTTTCCAACATACTTATGGATAAAAATGAGCACCCAATGGTTAGGCATGAAGCTGCTGAAGCTCTTGGTTCTATTGCAGATGAGCAAAGTGTATCACTTCTGAAGGAATTTGCAATGGATCCTGAGCCTATCGTGTCTCAGAGCTGTGAAGTTGCTCTAAGCATGCTGGAATATGAAGGATCAGGCAAATCGTTTGAGGTATGCATATCAAACTATGAGTCAGGAACTATGAAACTCTGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

323

Amino Acids

34.86

Weight (kDa)

4.63

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	22 - 94	2e-06	HEAT repeats
HEAT_2	PF13646	56 - 141	1.4e-15	HEAT repeats
HEAT_PBS	PF03130	69 - 94	1.9e-06	PBS lyase HEAT-like repeat
HEAT_2	PF13646	218 - 295	3e-12	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	112, 577
AccII	CGCG	1 cut(s)	160
AciI	CCGC	8 cut(s)	30, 112, 136, 158, 177, 269, 577, 670
AclWI	GGATC	6 cut(s)	377, 488, 501, 839, 852, 913
AcsI	RAATTY	1 cut(s)	833
AcuI	CTGAAG	3 cut(s)	702, 804, 848
AcyI	GRCGYC	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	35, 36, 183
Alw21I	GWGCWC	2 cut(s)	664, 759
Alw26I	GTCTC	2 cut(s)	398, 867
AlwI	GGATC	6 cut(s)	377, 488, 501, 839, 852, 913
AoxI	GGCC	2 cut(s)	148, 694
ApeKI	GCWGC	7 cut(s)	97, 215, 314, 500, 713, 722, 779
ApoI	RAATTY	1 cut(s)	833
ArsI	GACNNNNNNTTYG	2 cut(s)	929, 961
Asp700I	GAANNNNTTC	1 cut(s)	546
AspLEI	GCGC	3 cut(s)	26, 97, 162
AspS9I	GGNCC	3 cut(s)	88, 149, 694
AsuC2I	CCSGG	2 cut(s)	37, 92
AsuHPI	GGTGA	4 cut(s)	42, 73, 468, 626
AvaII	GGWCC	1 cut(s)	88
BamHI	GGATCC	2 cut(s)	493, 844
BauI	CACGAG	1 cut(s)	674
Bbv12I	GWGCWC	2 cut(s)	664, 759
BbvI	GCAGC	7 cut(s)	109, 202, 326, 487, 700, 709, 766
BccI	CCATC	2 cut(s)	52, 602
BceAI	ACGGC	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	37, 92
BcoDI	GTCTC	2 cut(s)	398, 867
BfaI	CTAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	8 cut(s)	98, 216, 315, 501, 671, 714, 723, 780
BlsI	GCNGC	8 cut(s)	99, 217, 316, 502, 672, 715, 724, 781
Bme1390I	CCNGG	2 cut(s)	37, 92
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	3 cut(s)	88, 149, 694
BmiI	GGNNCC	4 cut(s)	90, 495, 652, 846
BmrFI	CCNGG	2 cut(s)	37, 92
BmsI	GCATC	1 cut(s)	301
Bpu10I	CCTNAGC	3 cut(s)	390, 536, 849
BpuMI	CCSGG	2 cut(s)	37, 92
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	246, 462, 645
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 36, 183
Bse118I	RCCGGY	1 cut(s)	505
Bse3DI	GCAATG	1 cut(s)	846
BseDI	CCNNGG	3 cut(s)	246, 462, 645
BseGI	GGATG	3 cut(s)	292, 472, 559
BseLI	CCNNNNNNNGG	3 cut(s)	35, 36, 183
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	3 cut(s)	404, 840, 878
BseXI	GCAGC	7 cut(s)	109, 202, 326, 487, 700, 709, 766
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	150, 696
BsiHKAI	GWGCWC	2 cut(s)	664, 759
BsiSI	CCGG	5 cut(s)	36, 53, 92, 497, 506
BslI	CCNNNNNNNGG	3 cut(s)	35, 36, 183
BsmAI	GTCTC	2 cut(s)	398, 867
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	150, 696
Bsp1286I	GDGCHC	2 cut(s)	664, 759
Bsp143I	GATC	4 cut(s)	382, 493, 844, 905
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	8 cut(s)	30, 112, 136, 158, 177, 269, 577, 670
BspANI	GGCC	2 cut(s)	150, 696
BspCNI	CTCAG	3 cut(s)	403, 841, 877
BspFNI	CGCG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	4 cut(s)	90, 495, 652, 846
BspPI	GGATC	6 cut(s)	377, 488, 501, 839, 852, 913
BspQI	GCTCTTC	2 cut(s)	526, 552
BsrBI	CCGCTC	2 cut(s)	112, 577
BsrDI	GCAATG	1 cut(s)	846
BsrFI	RCCGGY	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	3 cut(s)	246, 462, 645
BssMI	GATC	4 cut(s)	382, 493, 844, 905
BssNI	GRCGYC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	674
BssT1I	CCWWGG	2 cut(s)	462, 645
Bst2BI	CACGAG	1 cut(s)	674
Bst6I	CTCTTC	2 cut(s)	526, 552
BstACI	GRCGYC	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	890
BstDEI	CTNAG	5 cut(s)	390, 536, 849, 864, 884
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	292, 472, 559
BstFNI	CGCG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	3 cut(s)	26, 97, 162
BstKTI	GATC	4 cut(s)	385, 496, 847, 908
BstMAI	GTCTC	2 cut(s)	398, 867
BstMBI	GATC	4 cut(s)	382, 493, 844, 905
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	2 cut(s)	35, 90
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	7 cut(s)	109, 202, 326, 487, 700, 709, 766
BstX2I	RGATCY	3 cut(s)	382, 493, 844
BstXI	CCANNNNNNTGG	1 cut(s)	202
BstYI	RGATCY	3 cut(s)	382, 493, 844
BsuRI	GGCC	2 cut(s)	150, 696
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	3 cut(s)	292, 472, 559
Cac8I	GCNNGC	1 cut(s)	890
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	3 cut(s)	26, 97, 162
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	3 cut(s)	88, 149, 694
CseI	GACGC	1 cut(s)	251
CviAII	CATG	5 cut(s)	209, 308, 463, 773, 889
DdeI	CTNAG	5 cut(s)	390, 536, 849, 864, 884
DpnI	GATC	4 cut(s)	384, 495, 846, 907
DpnII	GATC	4 cut(s)	382, 493, 844, 905
DraI	TTTAAA	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	526, 552
EarI	CTCTTC	2 cut(s)	526, 552
Eco130I	CCWWGG	2 cut(s)	462, 645
Eco47I	GGWCC	1 cut(s)	88
Eco57I	CTGAAG	3 cut(s)	702, 804, 848
EcoO109I	RGGNCCY	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	462, 645
EcoT22I	ATGCAT	1 cut(s)	932
ErhI	CCWWGG	2 cut(s)	462, 645
FaeI	CATG	5 cut(s)	212, 311, 466, 776, 892
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FatI	CATG	5 cut(s)	208, 307, 462, 772, 888
FauI	CCCGC	2 cut(s)	37, 165
Fnu4HI	GCNGC	8 cut(s)	98, 216, 315, 501, 671, 714, 723, 780
FokI	GGATG	3 cut(s)	279, 479, 566
Fsp4HI	GCNGC	8 cut(s)	98, 216, 315, 501, 671, 714, 723, 780
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	3 cut(s)	25, 96, 161
GluI	GCNGC	8 cut(s)	98, 216, 315, 501, 671, 714, 723, 780
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	150, 696
HapII	CCGG	5 cut(s)	36, 53, 92, 497, 506
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	3 cut(s)	26, 97, 162
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	5 cut(s)	212, 311, 466, 776, 892
Hin6I	GCGC	3 cut(s)	24, 95, 160
HinP1I	GCGC	3 cut(s)	24, 95, 160
HinfI	GANTC	4 cut(s)	44, 188, 641, 944
HpaII	CCGG	5 cut(s)	36, 53, 92, 497, 506
HphI	GGTGA	4 cut(s)	42, 73, 468, 626
Hpy188I	TCNGA	6 cut(s)	109, 119, 382, 603, 828, 867
Hpy188III	TCNNGA	6 cut(s)	308, 392, 551, 848, 948, 964
Hpy99I	CGWCG	2 cut(s)	20, 23
HpyAV	CCTTC	2 cut(s)	823, 896
HpyF3I	CTNAG	5 cut(s)	390, 536, 849, 864, 884
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	212, 311, 466, 776, 892
HspAI	GCGC	3 cut(s)	24, 95, 160
Kzo9I	GATC	4 cut(s)	382, 493, 844, 905
LguI	GCTCTTC	2 cut(s)	526, 552
LmnI	GCTCC	2 cut(s)	31, 109
Lsp1109I	GCAGC	7 cut(s)	109, 202, 326, 487, 700, 709, 766
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	48, 625
MalI	GATC	4 cut(s)	384, 495, 846, 907
MbiI	CCGCTC	2 cut(s)	112, 577
MboI	GATC	4 cut(s)	382, 493, 844, 905
MboII	GAAGA	3 cut(s)	183, 513, 539
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	3 cut(s)	382, 493, 844
MhlI	GDGCHC	2 cut(s)	664, 759
MluCI	AATT	6 cut(s)	252, 333, 429, 636, 698, 833
MlyI	GAGTC	2 cut(s)	53, 953
MmeI	TCCRAC	2 cut(s)	219, 756
MnlI	CCTC	8 cut(s)	152, 205, 241, 304, 366, 388, 670, 916
Mph1103I	ATGCAT	1 cut(s)	932
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	3 cut(s)	362, 423, 441
MslI	CAYNNNNRTG	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	5 cut(s)	36, 53, 92, 497, 506
MspR9I	CCNGG	2 cut(s)	37, 92
MunI	CAATTG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	451
MvnI	CGCG	1 cut(s)	160
NciI	CCSGG	2 cut(s)	37, 92
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	4 cut(s)	382, 493, 844, 905
NlaIII	CATG	5 cut(s)	212, 311, 466, 776, 892
NlaIV	GGNNCC	4 cut(s)	90, 495, 652, 846
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	932
NspI	RCATGY	1 cut(s)	892
PaeI	GCATGC	1 cut(s)	892
PagI	TCATGA	1 cut(s)	307
PciSI	GCTCTTC	2 cut(s)	526, 552
PctI	GAATGC	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	188, 641
PkrI	GCNGC	8 cut(s)	99, 217, 316, 502, 672, 715, 724, 781
PleI	GAGTC	2 cut(s)	52, 952
PpsI	GAGTC	2 cut(s)	52, 952
PspN4I	GGNNCC	4 cut(s)	90, 495, 652, 846
PspPI	GGNCC	3 cut(s)	88, 149, 694
PsuI	RGATCY	3 cut(s)	382, 493, 844
PvuII	CAGCTG	1 cut(s)	722
RseI	CAYNNNNRTG	1 cut(s)	740
SapI	GCTCTTC	2 cut(s)	526, 552
SaqAI	TTAA	3 cut(s)	362, 423, 441
SatI	GCNGC	8 cut(s)	98, 216, 315, 501, 671, 714, 723, 780
Sau3AI	GATC	4 cut(s)	382, 493, 844, 905
Sau96I	GGNCC	3 cut(s)	88, 149, 694
SchI	GAGTC	2 cut(s)	53, 953
ScrFI	CCNGG	2 cut(s)	37, 92
SduI	GDGCHC	2 cut(s)	664, 759
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	892
Sse9I	AATT	6 cut(s)	252, 333, 429, 636, 698, 833
SsiI	CCGC	8 cut(s)	30, 112, 136, 158, 177, 269, 577, 670
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	35, 90
StyI	CCWWGG	2 cut(s)	462, 645
TaqI	TCGA	2 cut(s)	42, 427
TasI	AATT	6 cut(s)	252, 333, 429, 636, 698, 833
TauI	GCSGC	1 cut(s)	673
TfiI	GAWTC	2 cut(s)	188, 641
Tru1I	TTAA	3 cut(s)	362, 423, 441
Tru9I	TTAA	3 cut(s)	362, 423, 441
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	7 cut(s)	97, 215, 314, 500, 713, 722, 779
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	6 cut(s)	483, 570, 633, 789, 915, 971
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	833
XceI	RCATGY	1 cut(s)	892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	1 cut(s)	450
Zsp2I	ATGCAT	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.