Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Reverse (-)

21642526 .. 21645241

Gene Structure 2716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18790.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTGGCCGGTTACAACAAAAAAAAGGTGGGAACTTCATCGTCGTCTTCGATTGGCGGGCATCCGATTCTGGTCTGACTTTGACAAACAAAACCCTAATCCGAAAAAGGTAGGGCTTGTTGGAATTCGAATACCTCACATCTCAAGCTCAATGGGTTCATTGAATGATGACGCCGCCGCCACCACCGCCACCAGCTTCGAGTCCTCAACGGAGATGGTGAAGTTCCTATGCGACCGGTTGCTCGACACGACACAGCCCATCTCGGAGCGCTTCAGAGCCTTGTTCTCTCTCCGCAACCTCAATGGCCCTGCCCCTCGCGACGCCCTCATTGCCGCAACAAGAGATTCTTCCAATTTGTTGGCACATGAGGCAGCATTTGCATTGGGTCAAATGCAAGATGTGGATGCAATCCCTGCCTTGGTAGCCGTTCTCAATGATCTCTCTTTGCATCCCATTGTTCGTCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTAGAGAGTAATGTTCCTCTTTTGAAGAATAGTCTAGCACTAGATCCTGCTCAGGAGGTCAAAGAAACTTGTGAATTGGCCCTTAATCGGATTGACCAATTGAAGGATGCTAATTGTCAATCCAAGGATGAAAAATCACCTTTTATGTCAGTTGATCCTGCTGCACCAGCTACTTCTGGTTCTTCTGTCTATCAGCTAAGGGAAGTTCTTCTGGATGTAAACAAAAGTATGTATGAGCGCTATGCGGCTCTCTTTGCTCTGCGGAATGATGGTGGAGATGAAGCTGTCACTGCTATAATTGATTCCTTGGGGTCAAACAGTGCTCTCTTGCGTCACGAGGTTGCTTATGTGTTAGGCCAATTGCAGAACAAAGCTGCTTCAGCCGCTCTTTCCAACATACTTATGAATAGAAATGAGCACCCAATGGTTAGACATGAAGCTGCAGAAGCTCTTGGTTCCATTGCAGATGACCAAAGTGTATCACTTCTCGAAGAATTTGCGAGGGATCCTGAACCAATTGTGTCACAGAGTTGCGAAGTTGCTCTAAGCATGCTGGAGTTTGAGAGATCAGGAAAATCCTTCGAGTACCTCTTCATGCAAGCTCCTCTAGTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

371

Amino Acids

40.54

Weight (kDa)

5.15

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	881
AccII	CGCG	1 cut(s)	318
AciI	CCGC	9 cut(s)	56, 174, 177, 186, 292, 333, 740, 757, 879
AclWI	GGATC	4 cut(s)	533, 644, 995, 1008
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	123, 989
AcuI	CTGAAG	2 cut(s)	256, 858
AcyI	GRCGYC	2 cut(s)	171, 321
AfaI	GTAC	1 cut(s)	1082
AfeI	AGCGCT	2 cut(s)	269, 734
AfiI	CCNNNNNNNGG	3 cut(s)	418, 582, 598
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	163, 520, 598
Alw21I	GWGCWC	2 cut(s)	820, 915
AlwI	GGATC	4 cut(s)	533, 644, 995, 1008
Aor51HI	AGCGCT	2 cut(s)	269, 734
AoxI	GGCC	4 cut(s)	5, 304, 573, 850
ApeKI	GCWGC	5 cut(s)	371, 470, 656, 869, 935
ApoI	RAATTY	2 cut(s)	123, 989
AsiGI	ACCGGT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	2 cut(s)	270, 735
AspS9I	GGNCC	2 cut(s)	305, 574
AsuHPI	GGTGA	2 cut(s)	229, 624
AsuII	TTCGAA	1 cut(s)	127
BamHI	GGATCC	1 cut(s)	1000
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	820, 915
BbvI	GCAGC	5 cut(s)	383, 482, 643, 856, 922
BccI	CCATC	3 cut(s)	208, 266, 758
BceAI	ACGGC	1 cut(s)	410
BcgI	CGANNNNNNTGC	2 cut(s)	974, 1008
BfaI	CTAG	3 cut(s)	530, 536, 1103
BfmI	CTRYAG	1 cut(s)	936
BfoI	RGCGCY	2 cut(s)	271, 736
BmgT120I	GGNCC	2 cut(s)	305, 574
BmiI	GGNNCC	2 cut(s)	952, 1002
BmsI	GCATC	4 cut(s)	69, 394, 457, 592
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	1070
Bpu10I	CCTNAGC	2 cut(s)	546, 692
Bpu14I	TTCGAA	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	127
BsaHI	GRCGYC	2 cut(s)	171, 321
BsaJI	CCNNGG	3 cut(s)	417, 618, 801
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 582, 598
Bse118I	RCCGGY	2 cut(s)	7, 234
Bse3DI	GCAATG	2 cut(s)	327, 954
BseDI	CCNNGG	3 cut(s)	417, 618, 801
BseGI	GGATG	6 cut(s)	60, 409, 448, 607, 628, 715
BseLI	CCNNNNNNNGG	3 cut(s)	418, 582, 598
BseMI	GCAATG	2 cut(s)	327, 954
BseMII	CTCAG	1 cut(s)	560
BseRI	GAGGAG	1 cut(s)	1089
BseXI	GCAGC	5 cut(s)	383, 482, 643, 856, 922
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	4 cut(s)	7, 306, 575, 852
BshTI	ACCGGT	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	2 cut(s)	820, 915
BsiSI	CCGG	2 cut(s)	8, 235
BslI	CCNNNNNNNGG	3 cut(s)	418, 582, 598
BsnI	GGCC	4 cut(s)	7, 306, 575, 852
Bsp119I	TTCGAA	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	820, 915
Bsp143I	GATC	5 cut(s)	436, 538, 649, 1000, 1061
Bsp68I	TCGCGA	1 cut(s)	318
BspACI	CCGC	9 cut(s)	56, 174, 177, 186, 292, 333, 740, 757, 879
BspANI	GGCC	4 cut(s)	7, 306, 575, 852
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	952, 1002
BspMAI	CTGCAG	1 cut(s)	940
BspPI	GGATC	4 cut(s)	533, 644, 995, 1008
BspT104I	TTCGAA	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	881
BsrDI	GCAATG	2 cut(s)	327, 954
BsrFI	RCCGGY	2 cut(s)	7, 234
BssAI	RCCGGY	2 cut(s)	7, 234
BssECI	CCNNGG	3 cut(s)	417, 618, 801
BssMI	GATC	5 cut(s)	436, 538, 649, 1000, 1061
BssNI	GRCGYC	2 cut(s)	171, 321
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	3 cut(s)	417, 618, 801
Bst2BI	CACGAG	1 cut(s)	830
Bst4CI	ACNGT	1 cut(s)	815
Bst6I	CTCTTC	1 cut(s)	1091
BstACI	GRCGYC	2 cut(s)	171, 321
BstAPI	GCANNNNNTGC	2 cut(s)	377, 413
BstBI	TTCGAA	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	58, 1046, 1095
BstDEI	CTNAG	3 cut(s)	546, 692, 1040
BstF5I	GGATG	6 cut(s)	60, 409, 448, 607, 628, 715
BstFNI	CGCG	1 cut(s)	318
BstH2I	RGCGCY	2 cut(s)	271, 736
BstHHI	GCGC	2 cut(s)	270, 735
BstKTI	GATC	5 cut(s)	439, 541, 652, 1003, 1064
BstMBI	GATC	5 cut(s)	436, 538, 649, 1000, 1061
BstMCI	CGRYCG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	1048
BstSFI	CTRYAG	1 cut(s)	936
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	5 cut(s)	383, 482, 643, 856, 922
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	538, 1000
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	2 cut(s)	538, 1000
BsuRI	GGCC	4 cut(s)	7, 306, 575, 852
BtsCI	GGATG	6 cut(s)	60, 409, 448, 607, 628, 715
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	783, 820
BtuMI	TCGCGA	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	58, 1046, 1095
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	270, 735
Cfr10I	RCCGGY	2 cut(s)	7, 234
Cfr13I	GGNCC	2 cut(s)	305, 574
CseI	GACGC	3 cut(s)	179, 329, 815
Csp6I	GTAC	1 cut(s)	1081
CspAI	ACCGGT	1 cut(s)	234
CviAII	CATG	5 cut(s)	365, 464, 929, 1045, 1090
CviQI	GTAC	1 cut(s)	1081
DdeI	CTNAG	3 cut(s)	546, 692, 1040
DpnI	GATC	5 cut(s)	438, 540, 651, 1002, 1063
DpnII	GATC	5 cut(s)	436, 538, 649, 1000, 1061
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	1 cut(s)	1091
EarI	CTCTTC	1 cut(s)	1091
Eco130I	CCWWGG	3 cut(s)	417, 618, 801
Eco47III	AGCGCT	2 cut(s)	269, 734
Eco57I	CTGAAG	2 cut(s)	256, 858
EcoRI	GAATTC	1 cut(s)	123
EcoT14I	CCWWGG	3 cut(s)	417, 618, 801
ErhI	CCWWGG	3 cut(s)	417, 618, 801
FaeI	CATG	5 cut(s)	368, 467, 932, 1048, 1093
FalI	AAGNNNNNCTT	2 cut(s)	331, 363
FatI	CATG	5 cut(s)	364, 463, 928, 1044, 1089
FauI	CCCGC	1 cut(s)	49
FokI	GGATG	6 cut(s)	47, 416, 435, 614, 635, 722
FspBI	CTAG	3 cut(s)	530, 536, 1103
GlaI	GCGC	2 cut(s)	269, 734
GsuI	CTGGAG	1 cut(s)	1070
HaeII	RGCGCY	2 cut(s)	271, 736
HaeIII	GGCC	4 cut(s)	7, 306, 575, 852
HapII	CCGG	2 cut(s)	8, 235
HgaI	GACGC	3 cut(s)	179, 329, 815
HhaI	GCGC	2 cut(s)	270, 735
Hin1I	GRCGYC	2 cut(s)	171, 321
Hin1II	CATG	5 cut(s)	368, 467, 932, 1048, 1093
Hin6I	GCGC	2 cut(s)	268, 733
HinP1I	GCGC	2 cut(s)	268, 733
HinfI	GANTC	4 cut(s)	66, 200, 344, 797
HpaII	CCGG	2 cut(s)	8, 235
HphI	GGTGA	2 cut(s)	229, 624
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	6 cut(s)	65, 76, 102, 265, 275, 585
Hpy188III	TCNNGA	8 cut(s)	317, 464, 548, 707, 830, 983, 1004, 1065
Hpy8I	GTNNAC	1 cut(s)	715
Hpy99I	CGWCG	2 cut(s)	45, 323
HpyAV	CCTTC	2 cut(s)	592, 1084
HpyCH4III	ACNGT	1 cut(s)	815
HpyF3I	CTNAG	3 cut(s)	546, 692, 1040
Hsp92I	GRCGYC	2 cut(s)	171, 321
Hsp92II	CATG	5 cut(s)	368, 467, 932, 1048, 1093
HspAI	GCGC	2 cut(s)	268, 733
Kzo9I	GATC	5 cut(s)	436, 538, 649, 1000, 1061
LmnI	GCTCC	2 cut(s)	265, 1102
Lsp1109I	GCAGC	5 cut(s)	383, 482, 643, 856, 922
LweI	GCATC	4 cut(s)	69, 394, 457, 592
MaeI	CTAG	3 cut(s)	530, 536, 1103
MaeIII	GTNAC	4 cut(s)	10, 781, 827, 1017
MalI	GATC	5 cut(s)	438, 540, 651, 1002, 1063
MbiI	CCGCTC	1 cut(s)	881
MboI	GATC	5 cut(s)	436, 538, 649, 1000, 1061
MboII	GAAGA	7 cut(s)	38, 339, 532, 669, 695, 998, 1078
MfeI	CAATTG	4 cut(s)	489, 593, 854, 1011
MflI	RGATCY	2 cut(s)	538, 1000
MhlI	GDGCHC	2 cut(s)	820, 915
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	100, 912
MroXI	GAANNNNTTC	1 cut(s)	702
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	896
MspI	CCGG	2 cut(s)	8, 235
MunI	CAATTG	4 cut(s)	489, 593, 854, 1011
MvnI	CGCG	1 cut(s)	318
NdeII	GATC	5 cut(s)	436, 538, 649, 1000, 1061
NlaIII	CATG	5 cut(s)	368, 467, 932, 1048, 1093
NlaIV	GGNNCC	2 cut(s)	952, 1002
NmuCI	GTSAC	3 cut(s)	781, 827, 1017
NruI	TCGCGA	1 cut(s)	318
NspI	RCATGY	1 cut(s)	1048
NspV	TTCGAA	1 cut(s)	127
PaeI	GCATGC	1 cut(s)	1048
PagI	TCATGA	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	3 cut(s)	66, 344, 797
PinAI	ACCGGT	1 cut(s)	234
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	952, 1002
PspPI	GGNCC	2 cut(s)	305, 574
PstI	CTGCAG	1 cut(s)	940
PsuI	RGATCY	2 cut(s)	538, 1000
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	1 cut(s)	1082
RsaNI	GTAC	1 cut(s)	1081
RseI	CAYNNNNRTG	1 cut(s)	896
SaqAI	TTAA	1 cut(s)	579
Sau3AI	GATC	5 cut(s)	436, 538, 649, 1000, 1061
Sau96I	GGNCC	2 cut(s)	305, 574
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	820, 915
SfaNI	GCATC	4 cut(s)	69, 394, 457, 592
SfcI	CTRYAG	1 cut(s)	936
SfuI	TTCGAA	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	896
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
SphI	GCATGC	1 cut(s)	1048
SsiI	CCGC	9 cut(s)	56, 174, 177, 186, 292, 333, 740, 757, 879
SspMI	CTAG	3 cut(s)	530, 536, 1103
StyI	CCWWGG	3 cut(s)	417, 618, 801
TaaI	ACNGT	1 cut(s)	815
TaqI	TCGA	6 cut(s)	49, 127, 198, 243, 984, 1077
TauI	GCSGC	5 cut(s)	176, 179, 335, 743, 881
TfiI	GAWTC	3 cut(s)	66, 344, 797
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	790, 820
TseFI	GTSAC	3 cut(s)	781, 827, 1017
TseI	GCWGC	5 cut(s)	371, 470, 656, 869, 935
Tsp45I	GTSAC	3 cut(s)	781, 827, 1017
TspDTI	ATGAA	7 cut(s)	26, 147, 639, 789, 914, 945, 1078
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	2 cut(s)	790, 820
XapI	RAATTY	2 cut(s)	123, 989
XceI	RCATGY	1 cut(s)	1048
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	3 cut(s)	530, 536, 1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.