Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Reverse (-)

28281169 .. 28283758

Gene Structure 2590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1187900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGCTCACTGAATGATGACGCCGCCGCCACCACCGCCACCACCTTCGAGTCCTCACCCGAGATGGTGAAATTTCTCTGCGACCGGTTGCTTGACCGGGCCCAGCCCATCTCGGAGCGTTTCAGAGCCTTGTTCTCTCTCCGCAACCTCAAAGGCCCTGCCCCTCGCGACGCCCTCATTGCCGCAACGAGGGATCCTTCCAATTTGTTGGCACACGAGGCTGCGTTTGCATTGGGTCAAATGCAAGATGTGGATGCAATCCCTGCCTTGGTTGCTGTTCTAAATGATTTCTCTTTGCATCCCATTGTTCGTCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTAGAGAGCAATGTTCCTCTTTTGAAAAATAGTCTAGCTCTAGATCCCGCTCAGGAGGTCAAAGAAACTTGTGAATTGGCCCTTAATCGGATTGAGCAGTTGAAGGATGCTGGTTGTCAATCAAATGATGAAAAATCACCTTTTATGTCAGTTGATCCTGCTGCACCTGCTACTTATGGTTCTTCAGTAAATCAGCTAAGGGAAGTTCTTCTGGATGAAAACAAAAGTATGTATGAGCGCTATGCCGCTCTCTTTGCACTGCGGAATGATGGTGGAGATGAAGCTGTTACCGGTATAGTTGATTCATTGGGTTCAAACAGTGCTCTCTTGCGTCACGAGGTTGCTTATGTGTTGGGTCAATTGCAGAACAAAGCTGCTTCGGCCGCTCTTTCCAACATACTTATGGATAGAAATGAACACCCAATGGTTAGACATGAAGCTGCAGAAGCTCTTGGTTCGATTGCAGATGACCAAAGTGTATCACTTCTCGAAGAATTTGCGAGGGATCCTGAACCTATTGTGTCACAGAGTTGCGAAGTTGCTCTAAGCATGCTGGAATTTGAGAGATCAGGAAAATCCTTCGAGTTTCTCTTCATGCAAGCTCCTCTAGTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

321

Amino Acids

34.65

Weight (kDa)

4.59

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	24 - 96	3e-07	HEAT repeats
HEAT_2	PF13646	57 - 143	5.7e-15	HEAT repeats
HEAT_PBS	PF03130	71 - 96	1e-05	PBS lyase HEAT-like repeat
HEAT_2	PF13646	215 - 297	1.3e-12	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
Acc36I	ACCTGC	1 cut(s)	520
AccBSI	CCGCTC	3 cut(s)	395, 593, 731
AccII	CGCG	1 cut(s)	168
AciI	CCGC	9 cut(s)	24, 27, 36, 142, 183, 393, 591, 607, 729
AclWI	GGATC	6 cut(s)	188, 201, 383, 494, 845, 858
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	3 cut(s)	71, 839, 902
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	2 cut(s)	21, 171
AfeI	AGCGCT	1 cut(s)	584
AfiI	CCNNNNNNNGG	3 cut(s)	189, 268, 432
AgeI	ACCGGT	2 cut(s)	84, 635
AgsI	TTSAA	3 cut(s)	370, 448, 660
AluBI	AGCT	8 cut(s)	329, 383, 541, 629, 719, 785, 794, 947
AluI	AGCT	8 cut(s)	329, 383, 541, 629, 719, 785, 794, 947
Alw21I	GWGCWC	1 cut(s)	670
AlwI	GGATC	6 cut(s)	188, 201, 383, 494, 845, 858
Ama87I	CYCGRG	1 cut(s)	59
Aor51HI	AGCGCT	1 cut(s)	584
AoxI	GGCC	4 cut(s)	99, 154, 423, 726
ApaI	GGGCCC	1 cut(s)	103
ApeKI	GCWGC	5 cut(s)	221, 320, 506, 719, 785
ApoI	RAATTY	3 cut(s)	71, 839, 902
AsiGI	ACCGGT	2 cut(s)	84, 635
Asp700I	GAANNNNTTC	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	4 cut(s)	99, 100, 155, 424
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	3 cut(s)	48, 79, 474
AvaI	CYCGRG	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	103
BamHI	GGATCC	2 cut(s)	193, 850
BanII	GRGCYC	2 cut(s)	8, 103
BauI	CACGAG	2 cut(s)	215, 680
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	5 cut(s)	208, 332, 493, 706, 772
BccI	CCATC	3 cut(s)	58, 116, 608
BcgI	CGANNNNNNTGC	2 cut(s)	824, 858
BcnI	CCSGG	1 cut(s)	98
BfaI	CTAG	3 cut(s)	380, 386, 953
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	4 cut(s)	99, 100, 155, 424
BmiI	GGNNCC	3 cut(s)	101, 195, 852
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	3 cut(s)	244, 307, 442
Bpu10I	CCTNAGC	2 cut(s)	396, 542
BpuMI	CCSGG	1 cut(s)	98
BsaHI	GRCGYC	2 cut(s)	21, 171
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	2 cut(s)	84, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 268, 432
Bse118I	RCCGGY	2 cut(s)	84, 635
Bse3DI	GCAATG	2 cut(s)	177, 361
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	4 cut(s)	259, 298, 457, 565
BseLI	CCNNNNNNNGG	3 cut(s)	189, 268, 432
BseMI	GCAATG	2 cut(s)	177, 361
BseMII	CTCAG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	939
BseSI	GKGCMC	1 cut(s)	103
BseX3I	CGGCCG	1 cut(s)	726
BseXI	GCAGC	5 cut(s)	208, 332, 493, 706, 772
BseYI	CCCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	2 cut(s)	85, 729
BshFI	GGCC	4 cut(s)	101, 156, 425, 728
BshTI	ACCGGT	2 cut(s)	84, 635
BsiEI	CGRYCG	2 cut(s)	85, 729
BsiHKAI	GWGCWC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	3 cut(s)	85, 97, 636
BslI	CCNNNNNNNGG	3 cut(s)	189, 268, 432
BsnI	GGCC	4 cut(s)	101, 156, 425, 728
BsoBI	CYCGRG	1 cut(s)	59
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	3 cut(s)	8, 103, 670
Bsp143I	GATC	5 cut(s)	193, 388, 499, 850, 911
Bsp68I	TCGCGA	1 cut(s)	168
BspACI	CCGC	9 cut(s)	24, 27, 36, 142, 183, 393, 591, 607, 729
BspANI	GGCC	4 cut(s)	101, 156, 425, 728
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	3 cut(s)	101, 195, 852
BspMAI	CTGCAG	1 cut(s)	790
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	6 cut(s)	188, 201, 383, 494, 845, 858
BsrBI	CCGCTC	3 cut(s)	395, 593, 731
BsrDI	GCAATG	2 cut(s)	177, 361
BsrFI	RCCGGY	2 cut(s)	84, 635
BssAI	RCCGGY	2 cut(s)	84, 635
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	5 cut(s)	193, 388, 499, 850, 911
BssNI	GRCGYC	2 cut(s)	21, 171
BssSI	CACGAG	2 cut(s)	215, 680
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	2 cut(s)	215, 680
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	1 cut(s)	941
BstACI	GRCGYC	2 cut(s)	21, 171
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	896, 945
BstDEI	CTNAG	3 cut(s)	396, 542, 890
BstF5I	GGATG	4 cut(s)	259, 298, 457, 565
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	5 cut(s)	196, 391, 502, 853, 914
BstMBI	GATC	5 cut(s)	193, 388, 499, 850, 911
BstMCI	CGRYCG	2 cut(s)	85, 729
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	5 cut(s)	208, 332, 493, 706, 772
BstX2I	RGATCY	3 cut(s)	193, 388, 850
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	3 cut(s)	193, 388, 850
BstZI	CGGCCG	1 cut(s)	726
BsuRI	GGCC	4 cut(s)	101, 156, 425, 728
BtsCI	GGATG	4 cut(s)	259, 298, 457, 565
BtsI	GCAGTG	1 cut(s)	602
BtsIMutI	CAGTG	3 cut(s)	8, 602, 670
BtuMI	TCGCGA	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	896, 945
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	2 cut(s)	84, 635
Cfr13I	GGNCC	4 cut(s)	99, 100, 155, 424
CseI	GACGC	3 cut(s)	29, 179, 665
CspAI	ACCGGT	2 cut(s)	84, 635
CviAII	CATG	4 cut(s)	314, 779, 895, 940
DdeI	CTNAG	3 cut(s)	396, 542, 890
DpnI	GATC	5 cut(s)	195, 390, 501, 852, 913
DpnII	GATC	5 cut(s)	193, 388, 499, 850, 911
EaeI	YGGCCR	1 cut(s)	726
EagI	CGGCCG	1 cut(s)	726
Eam1104I	CTCTTC	1 cut(s)	941
EarI	CTCTTC	1 cut(s)	941
EclXI	CGGCCG	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	2 cut(s)	8, 103
Eco47III	AGCGCT	1 cut(s)	584
Eco52I	CGGCCG	1 cut(s)	726
Eco57I	CTGAAG	1 cut(s)	513
Eco88I	CYCGRG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	2 cut(s)	8, 103
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	317, 782, 898, 943
FatI	CATG	4 cut(s)	313, 778, 894, 939
FauI	CCCGC	1 cut(s)	400
FokI	GGATG	4 cut(s)	266, 285, 464, 572
FriOI	GRGCYC	2 cut(s)	8, 103
FspBI	CTAG	3 cut(s)	380, 386, 953
GlaI	GCGC	1 cut(s)	584
GsaI	CCCAGC	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	586
HaeIII	GGCC	4 cut(s)	101, 156, 425, 728
HapII	CCGG	3 cut(s)	85, 97, 636
HgaI	GACGC	3 cut(s)	29, 179, 665
HhaI	GCGC	1 cut(s)	585
Hin1I	GRCGYC	2 cut(s)	21, 171
Hin1II	CATG	4 cut(s)	317, 782, 898, 943
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	2 cut(s)	50, 647
HpaII	CCGG	3 cut(s)	85, 97, 636
HphI	GGTGA	3 cut(s)	48, 79, 474
Hpy188I	TCNGA	3 cut(s)	115, 125, 435
Hpy188III	TCNNGA	9 cut(s)	167, 314, 386, 398, 557, 680, 833, 854, 915
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	4 cut(s)	55, 207, 442, 934
HpyCH4III	ACNGT	1 cut(s)	665
HpyF3I	CTNAG	3 cut(s)	396, 542, 890
Hsp92I	GRCGYC	2 cut(s)	21, 171
Hsp92II	CATG	4 cut(s)	317, 782, 898, 943
HspAI	GCGC	1 cut(s)	583
Kzo9I	GATC	5 cut(s)	193, 388, 499, 850, 911
LmnI	GCTCC	2 cut(s)	115, 952
Lsp1109I	GCAGC	5 cut(s)	208, 332, 493, 706, 772
LweI	GCATC	3 cut(s)	244, 307, 442
MaeI	CTAG	3 cut(s)	380, 386, 953
MaeIII	GTNAC	3 cut(s)	631, 677, 867
MalI	GATC	5 cut(s)	195, 390, 501, 852, 913
MbiI	CCGCTC	3 cut(s)	395, 593, 731
MboI	GATC	5 cut(s)	193, 388, 499, 850, 911
MboII	GAAGA	4 cut(s)	519, 545, 848, 928
MfeI	CAATTG	2 cut(s)	339, 704
MflI	RGATCY	3 cut(s)	193, 388, 850
MhlI	GDGCHC	3 cut(s)	8, 103, 670
MluCI	AATT	7 cut(s)	71, 202, 339, 419, 704, 839, 902
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	552
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	746
MspI	CCGG	3 cut(s)	85, 97, 636
MspR9I	CCNGG	1 cut(s)	98
MunI	CAATTG	2 cut(s)	339, 704
MvnI	CGCG	1 cut(s)	168
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	5 cut(s)	193, 388, 499, 850, 911
NlaIII	CATG	4 cut(s)	317, 782, 898, 943
NlaIV	GGNNCC	3 cut(s)	101, 195, 852
NmuCI	GTSAC	2 cut(s)	677, 867
NruI	TCGCGA	1 cut(s)	168
NspI	RCATGY	1 cut(s)	898
PaeI	GCATGC	1 cut(s)	898
PagI	TCATGA	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	552
PfeI	GAWTC	1 cut(s)	647
PinAI	ACCGGT	2 cut(s)	84, 635
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	101, 195, 852
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	4 cut(s)	99, 100, 155, 424
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	3 cut(s)	193, 388, 850
RruI	TCGCGA	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	746
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	5 cut(s)	193, 388, 499, 850, 911
Sau96I	GGNCC	4 cut(s)	99, 100, 155, 424
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	3 cut(s)	8, 103, 670
SfaNI	GCATC	3 cut(s)	244, 307, 442
SfcI	CTRYAG	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	746
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	7 cut(s)	71, 202, 339, 419, 704, 839, 902
SsiI	CCGC	9 cut(s)	24, 27, 36, 142, 183, 393, 591, 607, 729
SspMI	CTAG	3 cut(s)	380, 386, 953
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	665
TaqI	TCGA	4 cut(s)	48, 803, 834, 927
TasI	AATT	7 cut(s)	71, 202, 339, 419, 704, 839, 902
TauI	GCSGC	5 cut(s)	26, 29, 185, 593, 731
TfiI	GAWTC	1 cut(s)	647
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	3 cut(s)	15, 609, 670
TseFI	GTSAC	2 cut(s)	677, 867
TseI	GCWGC	5 cut(s)	221, 320, 506, 719, 785
Tsp45I	GTSAC	2 cut(s)	677, 867
TspDTI	ATGAA	7 cut(s)	489, 576, 639, 639, 774, 795, 928
TspRI	CASTG	3 cut(s)	15, 609, 670
XapI	RAATTY	3 cut(s)	71, 839, 902
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	1 cut(s)	898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmnI	GAANNNNTTC	1 cut(s)	552
XspI	CTAG	3 cut(s)	380, 386, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.