Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Reverse (-)

19437143 .. 19439570

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16240.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCTTTTAAGACCTATTGGGCTGGGCTGGAATCTGAATAGGGTTTTACAAACCCGGACAGAGCCCATCATATATAAAATTAAAATAAAAAGTGTAAAAAGCAAAAAATGGTGGGAACTTCATGGTCGTCTTCAATTGGCGAGCATCCAATTCTGGTCGGACTGTGATCCTAATCCGCACAAGGTAGGGTTTGTTGGAATCCGAATACCTCACATCTCAAGCTCAATGGGCTCACTGAATGATGACGCCGCTGCCGCCACCGCCACCACCTTCGAGTCCTCACCGGAGATGGTGAAATTTCTCTGCGACCGGTTGCTTGACCGGGCCCAGCCCATCTCGGAGCGTTTCAGAGCCTTGTTCTCTCTCCGCAACCTCAAGGGCCCTGTCCCTCGCGACGCCCTCATTGCCGCAACGAGGGATCCTTCCAATTTGTTGGCACATGAGGCTGCATTTGCATTGGGTCAAATGCAAGATGTGGATGCAATCCCTGCCTTAGTTGCCATTCTAAATGATTTCTCTTTGCATCCTATTGTTCGTCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTAGAGAGCAATGTTCCTCTTTTGAAAAATAGTCTAGCTCTAGATTCCGCTCAGGAGGTCAAAGAAACTTGTGAATTGGCCCTTAATCGGATTGAACAGTTGAAGGATGCTGGTTGTCAATCAAATGATGAAAAATCACCTTTTATGTCAGTTGATCCTGCTGCACCTGCTACTTCTGGTTCTTCAGTAAATCAGCTAAGGGAAGTTCTTCTGGATGAAAACAAAAGTATGTATGAGCGCTATGCCGCTCTCTTTGCACTGCGGAATGATGGTGGAGATGAAGCTGTTACCGCTATAGTTGATTCCTTGGGTTCAAACAGTGCTCTCTTGCGTCACGAGGTTGCTTATGTGTTGGGCCAATTGCAGGACAAAGCTGCTTCGACCGCTCTTTCCAACATACTTATGGATAGAAATGAACACCCAATGGTTAGACATGAAGCTGCAGAAGCTCTTGGTTCCATTGCAGATGACCGAAGTGTATCACTTCTTGAAGAATTTGTGAGGGATCCTGAGCCCATTGTGTCACAAAGTTGCGAAGTTGCTCTAAGCATGCTGGAATTTGAGAGATCAGGAAAATCCTTCGAGTTTCTCTTCATGCAAGCTCCTCTAGTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

396

Amino Acids

43.4

Weight (kDa)

5.18

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	745
AccBSI	CCGCTC	3 cut(s)	620, 818, 956
AccII	CGCG	1 cut(s)	393
AclWI	GGATC	6 cut(s)	161, 413, 426, 719, 1070, 1083
AcsI	RAATTY	3 cut(s)	296, 1064, 1127
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	2 cut(s)	246, 396
AfeI	AGCGCT	1 cut(s)	809
AfiI	CCNNNNNNNGG	3 cut(s)	414, 657, 934
AgeI	ACCGGT	1 cut(s)	309
AgsI	TTSAA	6 cut(s)	134, 595, 665, 673, 885, 1061
AluBI	AGCT	9 cut(s)	222, 554, 608, 766, 854, 944, 1010, 1019, 1172
AluI	AGCT	9 cut(s)	222, 554, 608, 766, 854, 944, 1010, 1019, 1172
Alw21I	GWGCWC	1 cut(s)	895
AlwI	GGATC	6 cut(s)	161, 413, 426, 719, 1070, 1083
Aor51HI	AGCGCT	1 cut(s)	809
AoxI	GGCC	4 cut(s)	324, 379, 648, 925
ApaI	GGGCCC	2 cut(s)	328, 383
ApeKI	GCWGC	6 cut(s)	251, 446, 545, 731, 944, 1010
ApoI	RAATTY	3 cut(s)	296, 1064, 1127
AsiGI	ACCGGT	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	810
AspS9I	GGNCC	6 cut(s)	324, 325, 379, 380, 649, 925
AsuC2I	CCSGG	2 cut(s)	55, 323
AsuHPI	GGTGA	3 cut(s)	273, 304, 699
BaeGI	GKGCMC	2 cut(s)	328, 383
BamHI	GGATCC	2 cut(s)	418, 1075
BanII	GRGCYC	5 cut(s)	66, 233, 328, 383, 1086
BauI	CACGAG	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	6 cut(s)	238, 433, 557, 718, 931, 997
BccI	CCATC	4 cut(s)	74, 283, 341, 833
BcnI	CCSGG	2 cut(s)	55, 323
BfaI	CTAG	3 cut(s)	605, 611, 1178
BfmI	CTRYAG	2 cut(s)	864, 1011
BfoI	RGCGCY	1 cut(s)	811
BfuAI	ACCTGC	1 cut(s)	745
Bme1390I	CCNGG	2 cut(s)	55, 323
BmgT120I	GGNCC	6 cut(s)	324, 325, 379, 380, 649, 925
BmiI	GGNNCC	5 cut(s)	326, 381, 420, 1027, 1077
BmrFI	CCNGG	2 cut(s)	55, 323
BmsI	GCATC	4 cut(s)	153, 469, 532, 667
BpiI	GAAGAC	1 cut(s)	122
Bpu10I	CCTNAGC	3 cut(s)	621, 767, 1080
BpuEI	CTTGAG	2 cut(s)	202, 359
BpuMI	CCSGG	2 cut(s)	55, 323
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	2 cut(s)	246, 396
BsaJI	CCNNGG	1 cut(s)	876
BsaWI	WCCGGW	2 cut(s)	283, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 657, 934
Bse118I	RCCGGY	1 cut(s)	309
Bse3DI	GCAATG	3 cut(s)	402, 586, 1029
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	876
BseGI	GGATG	5 cut(s)	144, 484, 523, 682, 790
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	414, 657, 934
BseMI	GCAATG	3 cut(s)	402, 586, 1029
BseMII	CTCAG	2 cut(s)	635, 1071
BseRI	GAGGAG	1 cut(s)	1164
BseSI	GKGCMC	2 cut(s)	328, 383
BseXI	GCAGC	6 cut(s)	238, 433, 557, 718, 931, 997
BseYI	CCCAGC	2 cut(s)	22, 327
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	393
Bsh1285I	CGRYCG	2 cut(s)	310, 954
BshFI	GGCC	4 cut(s)	326, 381, 650, 927
BshTI	ACCGGT	1 cut(s)	309
BsiEI	CGRYCG	2 cut(s)	310, 954
BsiHKAI	GWGCWC	1 cut(s)	895
BsiSI	CCGG	4 cut(s)	55, 284, 310, 322
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	414, 657, 934
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	4 cut(s)	326, 381, 650, 927
Bsp120I	GGGCCC	2 cut(s)	324, 379
Bsp1286I	GDGCHC	6 cut(s)	66, 233, 328, 383, 895, 1086
Bsp143I	GATC	5 cut(s)	166, 418, 724, 1075, 1136
Bsp68I	TCGCGA	1 cut(s)	393
BspANI	GGCC	4 cut(s)	326, 381, 650, 927
BspCNI	CTCAG	2 cut(s)	634, 1072
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	5 cut(s)	326, 381, 420, 1027, 1077
BspMAI	CTGCAG	1 cut(s)	1015
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	6 cut(s)	161, 413, 426, 719, 1070, 1083
BsrBI	CCGCTC	3 cut(s)	620, 818, 956
BsrDI	GCAATG	3 cut(s)	402, 586, 1029
BsrFI	RCCGGY	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	876
BssMI	GATC	5 cut(s)	166, 418, 724, 1075, 1136
BssNI	GRCGYC	2 cut(s)	246, 396
BssSI	CACGAG	1 cut(s)	905
BssT1I	CCWWGG	1 cut(s)	876
Bst2BI	CACGAG	1 cut(s)	905
Bst4CI	ACNGT	3 cut(s)	164, 669, 890
Bst6I	CTCTTC	1 cut(s)	1166
BstACI	GRCGYC	2 cut(s)	246, 396
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	3 cut(s)	142, 1121, 1170
BstDEI	CTNAG	5 cut(s)	493, 621, 767, 1080, 1115
BstF5I	GGATG	5 cut(s)	144, 484, 523, 682, 790
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	810
BstKTI	GATC	5 cut(s)	169, 421, 727, 1078, 1139
BstMBI	GATC	5 cut(s)	166, 418, 724, 1075, 1136
BstMCI	CGRYCG	2 cut(s)	310, 954
BstNSI	RCATGY	1 cut(s)	1123
BstSCI	CCNGG	2 cut(s)	53, 321
BstSFI	CTRYAG	2 cut(s)	864, 1011
BstSLI	GKGCMC	2 cut(s)	328, 383
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	6 cut(s)	238, 433, 557, 718, 931, 997
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	2 cut(s)	418, 1075
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	2 cut(s)	418, 1075
BsuRI	GGCC	4 cut(s)	326, 381, 650, 927
BtsCI	GGATG	5 cut(s)	144, 484, 523, 682, 790
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	3 cut(s)	233, 827, 895
BtuMI	TCGCGA	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	3 cut(s)	142, 1121, 1170
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	810
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	6 cut(s)	324, 325, 379, 380, 649, 925
CseI	GACGC	3 cut(s)	254, 404, 890
CspAI	ACCGGT	1 cut(s)	309
CviAII	CATG	6 cut(s)	122, 440, 539, 1004, 1120, 1165
DdeI	CTNAG	5 cut(s)	493, 621, 767, 1080, 1115
DpnI	GATC	5 cut(s)	168, 420, 726, 1077, 1138
DpnII	GATC	5 cut(s)	166, 418, 724, 1075, 1136
Eam1104I	CTCTTC	1 cut(s)	1166
EarI	CTCTTC	1 cut(s)	1166
Eco130I	CCWWGG	1 cut(s)	876
Eco24I	GRGCYC	5 cut(s)	66, 233, 328, 383, 1086
Eco47III	AGCGCT	1 cut(s)	809
Eco57I	CTGAAG	1 cut(s)	738
EcoO109I	RGGNCCY	2 cut(s)	379, 380
EcoT14I	CCWWGG	1 cut(s)	876
EcoT38I	GRGCYC	5 cut(s)	66, 233, 328, 383, 1086
ErhI	CCWWGG	1 cut(s)	876
FaeI	CATG	6 cut(s)	125, 443, 542, 1007, 1123, 1168
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	6 cut(s)	121, 439, 538, 1003, 1119, 1164
FokI	GGATG	5 cut(s)	131, 491, 510, 689, 797
FriOI	GRGCYC	5 cut(s)	66, 233, 328, 383, 1086
FspBI	CTAG	3 cut(s)	605, 611, 1178
GlaI	GCGC	1 cut(s)	809
GsaI	CCCAGC	2 cut(s)	26, 331
HaeII	RGCGCY	1 cut(s)	811
HaeIII	GGCC	4 cut(s)	326, 381, 650, 927
HapII	CCGG	4 cut(s)	55, 284, 310, 322
HgaI	GACGC	3 cut(s)	254, 404, 890
HhaI	GCGC	1 cut(s)	810
Hin1I	GRCGYC	2 cut(s)	246, 396
Hin1II	CATG	6 cut(s)	125, 443, 542, 1007, 1123, 1168
Hin6I	GCGC	1 cut(s)	808
HinP1I	GCGC	1 cut(s)	808
HinfI	GANTC	5 cut(s)	31, 198, 275, 614, 872
HpaII	CCGG	4 cut(s)	55, 284, 310, 322
HphI	GGTGA	3 cut(s)	273, 304, 699
Hpy188I	TCNGA	6 cut(s)	36, 160, 203, 340, 350, 660
Hpy188III	TCNNGA	9 cut(s)	392, 539, 611, 623, 782, 905, 1058, 1079, 1140
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	4 cut(s)	280, 432, 667, 1159
HpyCH4III	ACNGT	3 cut(s)	164, 669, 890
HpyF3I	CTNAG	5 cut(s)	493, 621, 767, 1080, 1115
Hsp92I	GRCGYC	2 cut(s)	246, 396
Hsp92II	CATG	6 cut(s)	125, 443, 542, 1007, 1123, 1168
HspAI	GCGC	1 cut(s)	808
Kzo9I	GATC	5 cut(s)	166, 418, 724, 1075, 1136
LmnI	GCTCC	2 cut(s)	340, 1177
Lsp1109I	GCAGC	6 cut(s)	238, 433, 557, 718, 931, 997
LweI	GCATC	4 cut(s)	153, 469, 532, 667
MaeI	CTAG	3 cut(s)	605, 611, 1178
MaeIII	GTNAC	3 cut(s)	856, 902, 1092
MalI	GATC	5 cut(s)	168, 420, 726, 1077, 1138
MbiI	CCGCTC	3 cut(s)	620, 818, 956
MboI	GATC	5 cut(s)	166, 418, 724, 1075, 1136
MboII	GAAGA	5 cut(s)	122, 744, 770, 1073, 1153
MfeI	CAATTG	3 cut(s)	134, 564, 929
MflI	RGATCY	2 cut(s)	418, 1075
MhlI	GDGCHC	6 cut(s)	66, 233, 328, 383, 895, 1086
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	3 cut(s)	138, 175, 987
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	3 cut(s)	8, 81, 654
MslI	CAYNNNNRTG	1 cut(s)	971
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	4 cut(s)	55, 284, 310, 322
MspR9I	CCNGG	2 cut(s)	55, 323
MunI	CAATTG	3 cut(s)	134, 564, 929
MvnI	CGCG	1 cut(s)	393
NciI	CCSGG	2 cut(s)	55, 323
NdeII	GATC	5 cut(s)	166, 418, 724, 1075, 1136
NlaIII	CATG	6 cut(s)	125, 443, 542, 1007, 1123, 1168
NlaIV	GGNNCC	5 cut(s)	326, 381, 420, 1027, 1077
NmuCI	GTSAC	2 cut(s)	902, 1092
NruI	TCGCGA	1 cut(s)	393
NspI	RCATGY	1 cut(s)	1123
PaeI	GCATGC	1 cut(s)	1123
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	745
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	4 cut(s)	31, 198, 614, 872
PinAI	ACCGGT	1 cut(s)	309
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PspFI	CCCAGC	2 cut(s)	22, 327
PspN4I	GGNNCC	5 cut(s)	326, 381, 420, 1027, 1077
PspOMI	GGGCCC	2 cut(s)	324, 379
PspPI	GGNCC	6 cut(s)	324, 325, 379, 380, 649, 925
PstI	CTGCAG	1 cut(s)	1015
PsuI	RGATCY	2 cut(s)	418, 1075
RruI	TCGCGA	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	971
SaqAI	TTAA	3 cut(s)	8, 81, 654
Sau3AI	GATC	5 cut(s)	166, 418, 724, 1075, 1136
Sau96I	GGNCC	6 cut(s)	324, 325, 379, 380, 649, 925
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	55, 323
SduI	GDGCHC	6 cut(s)	66, 233, 328, 383, 895, 1086
SfaNI	GCATC	4 cut(s)	153, 469, 532, 667
SfcI	CTRYAG	2 cut(s)	864, 1011
SmiMI	CAYNNNNRTG	1 cut(s)	971
SmlI	CTYRAG	2 cut(s)	217, 374
SmoI	CTYRAG	2 cut(s)	217, 374
SphI	GCATGC	1 cut(s)	1123
SspMI	CTAG	3 cut(s)	605, 611, 1178
StyD4I	CCNGG	2 cut(s)	53, 321
StyI	CCWWGG	1 cut(s)	876
TaaI	ACNGT	3 cut(s)	164, 669, 890
TaqI	TCGA	3 cut(s)	273, 950, 1152
TaqII	GACCGA	1 cut(s)	1056
TauI	GCSGC	4 cut(s)	251, 257, 410, 818
TfiI	GAWTC	4 cut(s)	31, 198, 614, 872
Tru1I	TTAA	3 cut(s)	8, 81, 654
Tru9I	TTAA	3 cut(s)	8, 81, 654
TscAI	CASTG	3 cut(s)	240, 834, 895
TseFI	GTSAC	2 cut(s)	902, 1092
TseI	GCWGC	6 cut(s)	251, 446, 545, 731, 944, 1010
Tsp45I	GTSAC	2 cut(s)	902, 1092
TspDTI	ATGAA	7 cut(s)	110, 714, 801, 864, 999, 1020, 1153
TspRI	CASTG	3 cut(s)	240, 834, 895
XapI	RAATTY	3 cut(s)	296, 1064, 1127
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	1123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	3 cut(s)	605, 611, 1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.