Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Reverse (-)

50889117 .. 50891970

Gene Structure 2854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCAAGACGCCGAGGCAATTCCTGCTTTGATAGCAGTTCTCAATGATTTATCTCTGCATCCCATTGTTCGTCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTGGAGAGCAATATTCCTCTTTTAAAGAATAGTCTGGTTTCAGATCCAGCTCAGGAGGTAAAAGAGACTTGTGAGTTGGCTCTTAATCGAATTGAGCAGTTGAAGAATGCTAGTAGTCAATCCATGGATGAAAAATCACCTTTTATGTCTGTGGATCCGGCTGCACCGGCTACTTCTGGCTCTTCTGTAAATCATCTAAGGGAAGCTCTTCTGGATGAAAAAAGGAGTATGTATGAGCGGTATTCAGCTCTCTTTGCACTTCGAAATGATGGTGGTGATGAAGCTGTTACTGCTATAATTGATTCCTTGGGTTCCCAAAGTGCTCTCTTGCGACACGAGGTTGCTTATGTGTTGGGCCAATTACAAGATAAATCTGCTTCAGCTGCTCTTTCCAACATCCTTATGGATAAAAATGAGCACCCAATGGTTAGACATGAAGCTGCTGAAGCTCTTGGTTCCATTGCAGATGGCCAAAGTGTATCACTTCTCAAGGAATTTGCAATGGATCCTGAGCCTATCGTGTCTCAGAGCTGTGAAGTTGCTCTAAGCATGCTTGAGTATGAAGGATCGGGCAAATCGTTTGAGTACCTATTCATGCAAGCTCCTCAAGTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

240

Amino Acids

25.88

Weight (kDa)

4.56

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	2 - 63	7.7e-10	HEAT repeats
HEAT_2	PF13646	135 - 217	6.1e-12	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	343
AciI	CCGC	1 cut(s)	343
AclWI	GGATC	6 cut(s)	143, 254, 267, 605, 618, 679
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	599
AcuI	CTGAAG	2 cut(s)	468, 570
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	692, 717
AgsI	TTSAA	1 cut(s)	208
Alw21I	GWGCWC	2 cut(s)	430, 525
Alw26I	GTCTC	2 cut(s)	164, 633
AlwI	GGATC	6 cut(s)	143, 254, 267, 605, 618, 679
AoxI	GGCC	2 cut(s)	460, 574
ApeKI	GCWGC	4 cut(s)	80, 266, 488, 545
ApoI	RAATTY	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	460
AsuHPI	GGTGA	2 cut(s)	234, 392
AsuII	TTCGAA	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	576
BamHI	GGATCC	2 cut(s)	259, 610
BauI	CACGAG	1 cut(s)	440
Bbv12I	GWGCWC	2 cut(s)	430, 525
BbvI	GCAGC	4 cut(s)	92, 253, 475, 532
BccI	CCATC	2 cut(s)	368, 566
BcoDI	GTCTC	2 cut(s)	164, 633
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	4 cut(s)	81, 267, 489, 546
BlsI	GCNGC	4 cut(s)	82, 268, 490, 547
BmgT120I	GGNCC	1 cut(s)	460
BmiI	GGNNCC	4 cut(s)	261, 418, 562, 612
BmsI	GCATC	1 cut(s)	67
Bpu10I	CCTNAGC	2 cut(s)	156, 615
Bpu14I	TTCGAA	1 cut(s)	367
BpuEI	CTTGAG	3 cut(s)	578, 680, 696
BsaHI	GRCGYC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	12, 228, 411
Bse118I	RCCGGY	1 cut(s)	271
Bse3DI	GCAATG	2 cut(s)	564, 612
BseDI	CCNNGG	3 cut(s)	12, 228, 411
BseGI	GGATG	4 cut(s)	58, 238, 325, 501
BseMI	GCAATG	2 cut(s)	564, 612
BseMII	CTCAG	3 cut(s)	170, 606, 644
BseRI	GAGGAG	1 cut(s)	699
BseXI	GCAGC	4 cut(s)	92, 253, 475, 532
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	462, 576
BsiHKAI	GWGCWC	2 cut(s)	430, 525
BsiSI	CCGG	2 cut(s)	263, 272
BsmAI	GTCTC	2 cut(s)	164, 633
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	462, 576
Bsp119I	TTCGAA	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	430, 525
Bsp143I	GATC	4 cut(s)	148, 259, 610, 671
Bsp19I	CCATGG	1 cut(s)	228
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	462, 576
BspCNI	CTCAG	3 cut(s)	169, 607, 643
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	4 cut(s)	261, 418, 562, 612
BspPI	GGATC	6 cut(s)	143, 254, 267, 605, 618, 679
BspQI	GCTCTTC	2 cut(s)	292, 318
BspT104I	TTCGAA	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	343
BsrDI	GCAATG	2 cut(s)	564, 612
BsrFI	RCCGGY	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	3 cut(s)	12, 228, 411
BssMI	GATC	4 cut(s)	148, 259, 610, 671
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	2 cut(s)	228, 411
Bst2BI	CACGAG	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	292, 318
BstACI	GRCGYC	1 cut(s)	9
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	656, 705
BstDEI	CTNAG	5 cut(s)	156, 302, 615, 630, 650
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	58, 238, 325, 501
BstKTI	GATC	4 cut(s)	151, 262, 613, 674
BstMAI	GTCTC	2 cut(s)	164, 633
BstMBI	GATC	4 cut(s)	148, 259, 610, 671
BstMWI	GCNNNNNNNGC	9 cut(s)	23, 32, 86, 95, 272, 359, 395, 488, 551
BstNSI	RCATGY	1 cut(s)	658
BstV1I	GCAGC	4 cut(s)	92, 253, 475, 532
BstX2I	RGATCY	3 cut(s)	148, 259, 610
BstYI	RGATCY	3 cut(s)	148, 259, 610
BsuRI	GGCC	2 cut(s)	462, 576
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	4 cut(s)	58, 238, 325, 501
Cac8I	GCNNGC	2 cut(s)	656, 705
CciI	TCATGA	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	460
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	691, 716
CviAII	CATG	5 cut(s)	74, 229, 539, 655, 700
CviQI	GTAC	2 cut(s)	691, 716
DdeI	CTNAG	5 cut(s)	156, 302, 615, 630, 650
DpnI	GATC	4 cut(s)	150, 261, 612, 673
DpnII	GATC	4 cut(s)	148, 259, 610, 671
DraI	TTTAAA	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	292, 318
EarI	CTCTTC	2 cut(s)	292, 318
Eco130I	CCWWGG	2 cut(s)	228, 411
Eco57I	CTGAAG	2 cut(s)	468, 570
EcoT14I	CCWWGG	2 cut(s)	228, 411
ErhI	CCWWGG	2 cut(s)	228, 411
FaeI	CATG	5 cut(s)	77, 232, 542, 658, 703
FatI	CATG	5 cut(s)	73, 228, 538, 654, 699
Fnu4HI	GCNGC	4 cut(s)	81, 267, 489, 546
FokI	GGATG	4 cut(s)	45, 245, 332, 488
Fsp4HI	GCNGC	4 cut(s)	81, 267, 489, 546
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	4 cut(s)	81, 267, 489, 546
HaeIII	GGCC	2 cut(s)	462, 576
HapII	CCGG	2 cut(s)	263, 272
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	77, 232, 542, 658, 703
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	2 cut(s)	263, 272
HphI	GGTGA	2 cut(s)	234, 392
Hpy188I	TCNGA	2 cut(s)	148, 633
Hpy188III	TCNNGA	4 cut(s)	74, 158, 317, 614
HpyAV	CCTTC	1 cut(s)	662
HpyCH4V	TGCA	8 cut(s)	4, 58, 98, 269, 362, 569, 605, 703
HpyF10VI	GCNNNNNNNGC	9 cut(s)	23, 32, 86, 95, 272, 359, 395, 488, 551
HpyF3I	CTNAG	5 cut(s)	156, 302, 615, 630, 650
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	77, 232, 542, 658, 703
Kzo9I	GATC	4 cut(s)	148, 259, 610, 671
LguI	GCTCTTC	2 cut(s)	292, 318
LmnI	GCTCC	1 cut(s)	712
LpnPI	CCDG	9 cut(s)	36, 125, 143, 165, 267, 276, 285, 302, 627
Lsp1109I	GCAGC	4 cut(s)	92, 253, 475, 532
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	4 cut(s)	150, 261, 612, 673
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	4 cut(s)	148, 259, 610, 671
MboII	GAAGA	3 cut(s)	220, 279, 305
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	3 cut(s)	148, 259, 610
MhlI	GDGCHC	2 cut(s)	430, 525
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	6 cut(s)	18, 99, 195, 402, 464, 599
MluNI	TGGCCA	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	6 cut(s)	7, 70, 132, 154, 436, 720
Mox20I	TGGCCA	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	2 cut(s)	128, 189
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	576
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	263, 272
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	217
MwoI	GCNNNNNNNGC	9 cut(s)	23, 32, 86, 95, 272, 359, 395, 488, 551
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	148, 259, 610, 671
NlaIII	CATG	5 cut(s)	77, 232, 542, 658, 703
NlaIV	GGNNCC	4 cut(s)	261, 418, 562, 612
NmeAIII	GCCGAG	1 cut(s)	37
NspI	RCATGY	1 cut(s)	658
NspV	TTCGAA	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	658
PagI	TCATGA	1 cut(s)	73
PciSI	GCTCTTC	2 cut(s)	292, 318
PcsI	WCGNNNNNNNCGW	1 cut(s)	680
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	4 cut(s)	82, 268, 490, 547
PspN4I	GGNNCC	4 cut(s)	261, 418, 562, 612
PspPI	GGNCC	1 cut(s)	460
PsuI	RGATCY	3 cut(s)	148, 259, 610
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	692, 717
RsaNI	GTAC	2 cut(s)	691, 716
RseI	CAYNNNNRTG	1 cut(s)	506
SapI	GCTCTTC	2 cut(s)	292, 318
SaqAI	TTAA	2 cut(s)	128, 189
SatI	GCNGC	4 cut(s)	81, 267, 489, 546
Sau3AI	GATC	4 cut(s)	148, 259, 610, 671
Sau96I	GGNCC	1 cut(s)	460
SduI	GDGCHC	2 cut(s)	430, 525
SfaNI	GCATC	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	3 cut(s)	593, 659, 711
SmoI	CTYRAG	3 cut(s)	593, 659, 711
SphI	GCATGC	1 cut(s)	658
Sse9I	AATT	6 cut(s)	18, 99, 195, 402, 464, 599
SsiI	CCGC	1 cut(s)	343
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	228, 411
TaqI	TCGA	2 cut(s)	193, 367
TasI	AATT	6 cut(s)	18, 99, 195, 402, 464, 599
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	128, 189
Tru9I	TTAA	2 cut(s)	128, 189
TseI	GCWGC	4 cut(s)	80, 266, 488, 545
TspDTI	ATGAA	6 cut(s)	249, 336, 399, 555, 681, 688
XapI	RAATTY	1 cut(s)	599
XceI	RCATGY	1 cut(s)	658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.