Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Forward (+)

19304570 .. 19307013

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGTTCGTTGAGTGACGACGGCGCCACCGCCACCGCCACCGGGTTCGAGTCGTCACCGGAGATGGTGAAGTTTCTCTGCGACAGATTGCTGGACCCGGCGCAGCCCATATCGGAGCGGTTCAGAGCCTTGTTCTCTCTCCGCAACCTCAAAGGCCCTGCCCCACGCAACGCCCTTATTACCGCAACAAGGGATTCTTCCAACTTGTTGGCACATGAGGCTGCATTTGCGTTGGGTCAAATGCAAGACGCGGAGGCAATTCCTGCTTTGATAGCAGTTCTCAATGATTTCTCTCTGCATCCCATTGTTCGGCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTGGAGAGCAATATTCCTCTTTTAAAGAATAGCCTGGTTTCAGATCCAGCTCAGGAGGTAAAAGAGACTTGTGAGTTGGCCCTTAATCGAATTGAGCAGTTGAAGAATGCTAGTAGTGAATCCATCAATGAAAAATCACCTTTTATGTCTGTGGATCCGGCTGCACCGGCTACTTCTGGCTCTTCTGTAAATCAGCTAAGGGAAGCTCTTTTGGATGAAAAAAGGAGTATGTATGAGCGGTATTCAGCTCTTTTTGCACTCCGGAATTATGGAGGTGATGAAGCTGTTACTGCTATAATTGATTCCTTGGGTTCCCAAAGTGCTCTCTTGCGGCACGAGGTTGCTTATGTGTTGGGCCAATTACAAGATAAAGCTGCTTCAGCTGCTCTTTCCAACATACTTATGGATAAAAATGAGCACCCAATGGTTAGACATGAAGCTGCTGAGGCTCTTGGTTCCATTGCAGATGACCAAAGTGTATCACTTCTCAAGGAATTTGCAATGGATCCTGAGCCTATCGTGTCTCAGAGCTGTGAAGTTGCTCTAAGCATGCTCGAGTATGAAGGATCGGGCAAATCCTTTGAGTACCTATTCATGCAAGCTCCTCAAGTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

320

Amino Acids

34.5

Weight (kDa)

4.65

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	24 - 96	1.9e-06	HEAT repeats
HEAT_2	PF13646	58 - 143	1.4e-15	HEAT repeats
HEAT_PBS	PF03130	71 - 96	1.8e-06	PBS lyase HEAT-like repeat
HEAT_2	PF13646	181 - 252	6.6e-06	HEAT repeats
HEAT_2	PF13646	252 - 297	2.2e-06	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	2 cut(s)	118, 583
AccII	CGCG	1 cut(s)	251
AccIII	TCCGGA	1 cut(s)	606
AciI	CCGC	8 cut(s)	30, 36, 118, 142, 183, 251, 583, 676
AclWI	GGATC	6 cut(s)	383, 494, 507, 845, 858, 919
AcsI	RAATTY	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	932, 957
AfiI	CCNNNNNNNGG	3 cut(s)	42, 189, 309
AgsI	TTSAA	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	378
Alw21I	GWGCWC	2 cut(s)	670, 765
Alw26I	GTCTC	2 cut(s)	404, 873
AlwI	GGATC	6 cut(s)	383, 494, 507, 845, 858, 919
Ama87I	CYCGRG	1 cut(s)	899
Aor13HI	TCCGGA	1 cut(s)	606
AoxI	GGCC	3 cut(s)	154, 423, 700
ApeKI	GCWGC	7 cut(s)	103, 221, 320, 506, 719, 728, 785
ApoI	RAATTY	1 cut(s)	839
AspLEI	GCGC	2 cut(s)	26, 103
AspS9I	GGNCC	4 cut(s)	94, 155, 424, 700
AsuC2I	CCSGG	2 cut(s)	43, 98
AsuHPI	GGTGA	4 cut(s)	48, 79, 474, 632
AvaI	CYCGRG	1 cut(s)	899
AvaII	GGWCC	1 cut(s)	94
BamHI	GGATCC	2 cut(s)	499, 850
BanI	GGYRCC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	680
Bbv12I	GWGCWC	2 cut(s)	670, 765
BbvCI	CCTCAGC	1 cut(s)	789
BbvI	GCAGC	7 cut(s)	115, 208, 332, 493, 706, 715, 772
BccI	CCATC	2 cut(s)	58, 476
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	2 cut(s)	43, 98
BcoDI	GTCTC	2 cut(s)	404, 873
BfaI	CTAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	8 cut(s)	104, 222, 321, 507, 677, 720, 729, 786
BlsI	GCNGC	8 cut(s)	105, 223, 322, 508, 678, 721, 730, 787
Bme1390I	CCNGG	3 cut(s)	43, 98, 380
Bme18I	GGWCC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	899
BmgT120I	GGNCC	4 cut(s)	94, 155, 424, 700
BmiI	GGNNCC	6 cut(s)	25, 96, 501, 658, 802, 852
BmrFI	CCNGG	3 cut(s)	43, 98, 380
BmsI	GCATC	1 cut(s)	307
Bpu10I	CCTNAGC	4 cut(s)	396, 542, 789, 855
BpuEI	CTTGAG	2 cut(s)	818, 936
BpuMI	CCSGG	2 cut(s)	43, 98
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	2 cut(s)	58, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 189, 309
Bse118I	RCCGGY	1 cut(s)	511
Bse3DI	GCAATG	2 cut(s)	804, 852
BseAI	TCCGGA	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	2 cut(s)	298, 565
BseLI	CCNNNNNNNGG	3 cut(s)	42, 189, 309
BseMI	GCAATG	2 cut(s)	804, 852
BseMII	CTCAG	4 cut(s)	410, 780, 846, 884
BseRI	GAGGAG	1 cut(s)	939
BseXI	GCAGC	7 cut(s)	115, 208, 332, 493, 706, 715, 772
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	156, 425, 702
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	670, 765
BsiHKCI	CYCGRG	1 cut(s)	899
BsiSI	CCGG	6 cut(s)	42, 59, 98, 503, 512, 607
BslI	CCNNNNNNNGG	3 cut(s)	42, 189, 309
BsmAI	GTCTC	2 cut(s)	404, 873
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	3 cut(s)	156, 425, 702
BsoBI	CYCGRG	1 cut(s)	899
Bsp1286I	GDGCHC	2 cut(s)	670, 765
Bsp13I	TCCGGA	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	388, 499, 850, 911
BspACI	CCGC	8 cut(s)	30, 36, 118, 142, 183, 251, 583, 676
BspANI	GGCC	3 cut(s)	156, 425, 702
BspCNI	CTCAG	4 cut(s)	409, 781, 847, 883
BspEI	TCCGGA	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	6 cut(s)	25, 96, 501, 658, 802, 852
BspPI	GGATC	6 cut(s)	383, 494, 507, 845, 858, 919
BspQI	GCTCTTC	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	23
BsrBI	CCGCTC	2 cut(s)	118, 583
BsrDI	GCAATG	2 cut(s)	804, 852
BsrFI	RCCGGY	1 cut(s)	511
BssAI	RCCGGY	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	4 cut(s)	388, 499, 850, 911
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	680
BssT1I	CCWWGG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	532
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	896, 945
BstDEI	CTNAG	6 cut(s)	396, 542, 789, 855, 870, 890
BstF5I	GGATG	2 cut(s)	298, 565
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	26, 103
BstKTI	GATC	4 cut(s)	391, 502, 853, 914
BstMAI	GTCTC	2 cut(s)	404, 873
BstMBI	GATC	4 cut(s)	388, 499, 850, 911
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	3 cut(s)	41, 96, 378
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	7 cut(s)	115, 208, 332, 493, 706, 715, 772
BstX2I	RGATCY	3 cut(s)	388, 499, 850
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	3 cut(s)	388, 499, 850
BsuRI	GGCC	3 cut(s)	156, 425, 702
BtsCI	GGATG	2 cut(s)	298, 565
Cac8I	GCNNGC	2 cut(s)	896, 945
CfoI	GCGC	2 cut(s)	26, 103
Cfr10I	RCCGGY	1 cut(s)	511
Cfr13I	GGNCC	4 cut(s)	94, 155, 424, 700
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	931, 956
CviAII	CATG	5 cut(s)	215, 314, 779, 895, 940
CviQI	GTAC	2 cut(s)	931, 956
DdeI	CTNAG	6 cut(s)	396, 542, 789, 855, 870, 890
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	4 cut(s)	390, 501, 852, 913
DpnII	GATC	4 cut(s)	388, 499, 850, 911
DraI	TTTAAA	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	899
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	651
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	5 cut(s)	218, 317, 782, 898, 943
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FatI	CATG	5 cut(s)	214, 313, 778, 894, 939
Fnu4HI	GCNGC	8 cut(s)	104, 222, 321, 507, 677, 720, 729, 786
FokI	GGATG	2 cut(s)	285, 572
Fsp4HI	GCNGC	8 cut(s)	104, 222, 321, 507, 677, 720, 729, 786
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	2 cut(s)	25, 102
GluI	GCNGC	8 cut(s)	104, 222, 321, 507, 677, 720, 729, 786
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	156, 425, 702
HapII	CCGG	6 cut(s)	42, 59, 98, 503, 512, 607
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	2 cut(s)	26, 103
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	5 cut(s)	218, 317, 782, 898, 943
Hin6I	GCGC	2 cut(s)	24, 101
HinP1I	GCGC	2 cut(s)	24, 101
HinfI	GANTC	4 cut(s)	50, 194, 464, 647
HpaII	CCGG	6 cut(s)	42, 59, 98, 503, 512, 607
HphI	GGTGA	4 cut(s)	48, 79, 474, 632
Hpy188I	TCNGA	4 cut(s)	115, 125, 388, 873
Hpy188III	TCNNGA	3 cut(s)	398, 607, 854
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	902
HpyCH4V	TGCA	9 cut(s)	224, 244, 298, 338, 509, 602, 809, 845, 943
HpyF3I	CTNAG	6 cut(s)	396, 542, 789, 855, 870, 890
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	5 cut(s)	218, 317, 782, 898, 943
HspAI	GCGC	2 cut(s)	24, 101
KasI	GGCGCC	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	606
Kzo9I	GATC	4 cut(s)	388, 499, 850, 911
LguI	GCTCTTC	1 cut(s)	532
LmnI	GCTCC	2 cut(s)	115, 952
Lsp1109I	GCAGC	7 cut(s)	115, 208, 332, 493, 706, 715, 772
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	3 cut(s)	14, 54, 631
MalI	GATC	4 cut(s)	390, 501, 852, 913
MbiI	CCGCTC	2 cut(s)	118, 583
MboI	GATC	4 cut(s)	388, 499, 850, 911
MboII	GAAGA	3 cut(s)	189, 460, 519
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	3 cut(s)	388, 499, 850
MhlI	GDGCHC	2 cut(s)	670, 765
MluCI	AATT	7 cut(s)	258, 339, 435, 610, 642, 704, 839
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	225, 762
MroI	TCCGGA	1 cut(s)	606
MseI	TTAA	2 cut(s)	368, 429
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	6 cut(s)	42, 59, 98, 503, 512, 607
MspR9I	CCNGG	3 cut(s)	43, 98, 380
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	251
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	2 cut(s)	43, 98
NdeII	GATC	4 cut(s)	388, 499, 850, 911
NlaIII	CATG	5 cut(s)	218, 317, 782, 898, 943
NlaIV	GGNNCC	6 cut(s)	25, 96, 501, 658, 802, 852
NmuCI	GTSAC	2 cut(s)	14, 54
NspI	RCATGY	1 cut(s)	898
PaeI	GCATGC	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	899
PciSI	GCTCTTC	1 cut(s)	532
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	3 cut(s)	194, 464, 647
PkrI	GCNGC	8 cut(s)	105, 223, 322, 508, 678, 721, 730, 787
PleI	GAGTC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	6 cut(s)	25, 96, 501, 658, 802, 852
PspPI	GGNCC	4 cut(s)	94, 155, 424, 700
PspXI	VCTCGAGB	1 cut(s)	899
PsuI	RGATCY	3 cut(s)	388, 499, 850
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	2 cut(s)	932, 957
RsaNI	GTAC	2 cut(s)	931, 956
RseI	CAYNNNNRTG	1 cut(s)	746
SapI	GCTCTTC	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	368, 429
SatI	GCNGC	8 cut(s)	104, 222, 321, 507, 677, 720, 729, 786
Sau3AI	GATC	4 cut(s)	388, 499, 850, 911
Sau96I	GGNCC	4 cut(s)	94, 155, 424, 700
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	3 cut(s)	43, 98, 380
SduI	GDGCHC	2 cut(s)	670, 765
SfaNI	GCATC	1 cut(s)	307
SfoI	GGCGCC	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	899
SinI	GGWCC	1 cut(s)	94
SlaI	CTCGAG	1 cut(s)	899
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	3 cut(s)	833, 899, 951
SmoI	CTYRAG	3 cut(s)	833, 899, 951
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	7 cut(s)	258, 339, 435, 610, 642, 704, 839
SsiI	CCGC	8 cut(s)	30, 36, 118, 142, 183, 251, 583, 676
SspDI	GGCGCC	1 cut(s)	23
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	3 cut(s)	41, 96, 378
StyI	CCWWGG	1 cut(s)	651
TaqI	TCGA	3 cut(s)	48, 433, 900
TasI	AATT	7 cut(s)	258, 339, 435, 610, 642, 704, 839
TatI	WGTACW	1 cut(s)	955
TauI	GCSGC	1 cut(s)	679
TfiI	GAWTC	3 cut(s)	194, 464, 647
Tru1I	TTAA	2 cut(s)	368, 429
Tru9I	TTAA	2 cut(s)	368, 429
TseFI	GTSAC	2 cut(s)	14, 54
TseI	GCWGC	7 cut(s)	103, 221, 320, 506, 719, 728, 785
Tsp45I	GTSAC	2 cut(s)	14, 54
TspDTI	ATGAA	6 cut(s)	489, 576, 639, 795, 921, 928
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	1 cut(s)	839
XceI	RCATGY	1 cut(s)	898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	899
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.