Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Reverse (-)

18161964 .. 18166037

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGTTCGTTGATCGACGACGGCGCCGCCACCGCCACCGGGTTCGAGTCGTCGCCGGAGATGGTGAAGTTTCTATGCGAAAGATTGCTCGACCCGGCCCAGCCCATATCGGAGCGGTTTAGAGCGTTGTTCTCTCTCCGCAACCTCAAAGGCGCTGCCCCACGCAACGCCCTAATTACCGCAACAAGGGATTCTTCTAACTTGTTGGCGCATGAGGCTGCGTTTGCATTGGGTCAAATGCAAGACGCGGAAGCCATTCCTGCTTTGATTGCGGTTCTCAATGATTTCTCTCTGCATCCCATTGTTCGTCATGAGGCAGCGGAAGCTCTTGGTGCAATTGGTTTGGAGAGTAATGTTCCTCTTTTAAAGAATAGCCTGGCTTCGGATCCAGCTCAGGAGGTAAAAGAAACTTGTGAGTTGGCCCTTAATCGAATTGAGCAGTTGAAGAATGCTAGTAGTCAATCCATGGATGAAAAATCACCTTTTATGTCTGTGGATCCAGCTGCACCGGCTACTTCAGGTTCTTCTGTAAATCAGTTAAGGGAGGCTCTTCTGGACGAAAAAAAGAGTATGTATGAGCGGTATTCAGCTCTCTTTGCACTTCGGAATCATGGAGGTGATGAAGCTGTTACTGCTATTATAGATTCTTTGGGGTCCCAAAGTGCTCTCTTGCGGCACGAGGTTGCTTATGTGTTGGGCCAATTACAAGATAAAGCTGCTTCAGCTGCTCTATCCAACATACTTATGGATAAAAATGAGCACCCAATGGTTAGACATGAGGCTGCTGAAGCTCTTGGTTCCATTGCAGATGAGCAAAGTGTATCCCTTCTCAAGGAATTTGCAATGGATCCTGAGTCTATCGTGTCTCAGAGCTGTGAAGTTGCTCTAAGCATGCTGGAATATGAAGGCTCAGGCAAATCATTTGAGTACCTCTTCATGCAAGCTCCTCAAGTACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

320

Amino Acids

34.34

Weight (kDa)

4.7

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	57 - 142	8.1e-16	HEAT repeats
HEAT_PBS	PF03130	70 - 95	1.8e-06	PBS lyase HEAT-like repeat
HEAT_2	PF13646	180 - 251	8.1e-06	HEAT repeats
HEAT_2	PF13646	251 - 296	8.6e-07	HEAT repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	2 cut(s)	115, 580
AccII	CGCG	1 cut(s)	248
AclWI	GGATC	6 cut(s)	380, 393, 491, 504, 842, 855
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	3 cut(s)	501, 705, 807
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	929, 954
AfiI	CCNNNNNNNGG	4 cut(s)	39, 186, 382, 832
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	375
Alw21I	GWGCWC	2 cut(s)	667, 762
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	6 cut(s)	380, 393, 491, 504, 842, 855
AoxI	GGCC	3 cut(s)	96, 420, 697
ApeKI	GCWGC	7 cut(s)	155, 218, 317, 503, 716, 725, 782
ApoI	RAATTY	1 cut(s)	836
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	26, 155, 211
AspS9I	GGNCC	4 cut(s)	97, 421, 654, 697
AsuC2I	CCSGG	2 cut(s)	40, 95
AsuHPI	GGTGA	3 cut(s)	76, 471, 629
AvaII	GGWCC	1 cut(s)	654
BamHI	GGATCC	3 cut(s)	385, 496, 847
BanI	GGYRCC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	677
Bbv12I	GWGCWC	2 cut(s)	667, 762
BbvI	GCAGC	7 cut(s)	142, 205, 329, 490, 703, 712, 769
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	377
BciVI	GTATCC	1 cut(s)	832
BcnI	CCSGG	2 cut(s)	40, 95
BcoDI	GTCTC	1 cut(s)	870
BfaI	CTAG	1 cut(s)	453
BfoI	RGCGCY	2 cut(s)	27, 156
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	9 cut(s)	27, 156, 219, 318, 504, 674, 717, 726, 783
BlsI	GCNGC	9 cut(s)	28, 157, 220, 319, 505, 675, 718, 727, 784
Bme1390I	CCNGG	3 cut(s)	40, 95, 377
Bme18I	GGWCC	1 cut(s)	654
BmgT120I	GGNCC	4 cut(s)	97, 421, 654, 697
BmiI	GGNNCC	7 cut(s)	25, 387, 498, 655, 656, 799, 849
BmrFI	CCNGG	3 cut(s)	40, 95, 377
BmsI	GCATC	1 cut(s)	304
Bpu10I	CCTNAGC	2 cut(s)	393, 910
BpuEI	CTTGAG	2 cut(s)	815, 933
BpuMI	CCSGG	2 cut(s)	40, 95
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 186, 382, 832
Bse118I	RCCGGY	1 cut(s)	508
Bse3DI	GCAATG	2 cut(s)	801, 849
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	295, 475
BseLI	CCNNNNNNNGG	4 cut(s)	39, 186, 382, 832
BseMI	GCAATG	2 cut(s)	801, 849
BseMII	CTCAG	4 cut(s)	407, 843, 881, 924
BseRI	GAGGAG	1 cut(s)	936
BseXI	GCAGC	7 cut(s)	142, 205, 329, 490, 703, 712, 769
BseYI	CCCAGC	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	3 cut(s)	98, 422, 699
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	667, 762
BsiSI	CCGG	4 cut(s)	39, 56, 95, 509
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	4 cut(s)	39, 186, 382, 832
BsmAI	GTCTC	1 cut(s)	870
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	98, 422, 699
Bsp1286I	GDGCHC	2 cut(s)	667, 762
Bsp143I	GATC	4 cut(s)	12, 385, 496, 847
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	3 cut(s)	98, 422, 699
BspCNI	CTCAG	4 cut(s)	406, 844, 880, 923
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	7 cut(s)	25, 387, 498, 655, 656, 799, 849
BspPI	GGATC	6 cut(s)	380, 393, 491, 504, 842, 855
BspQI	GCTCTTC	1 cut(s)	555
BspT107I	GGYRCC	1 cut(s)	23
BsrBI	CCGCTC	2 cut(s)	115, 580
BsrDI	GCAATG	2 cut(s)	801, 849
BsrFI	RCCGGY	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	4 cut(s)	12, 385, 496, 847
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	677
BssT1I	CCWWGG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	677
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	957
Bst6I	CTCTTC	2 cut(s)	555, 938
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	893, 942
BstDEI	CTNAG	5 cut(s)	393, 852, 867, 887, 910
BstDSI	CCRYGG	1 cut(s)	465
BstENI	CCTNNNNNAGG	1 cut(s)	830
BstF5I	GGATG	2 cut(s)	295, 475
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	2 cut(s)	27, 156
BstHHI	GCGC	3 cut(s)	26, 155, 211
BstKTI	GATC	4 cut(s)	15, 388, 499, 850
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	4 cut(s)	12, 385, 496, 847
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	3 cut(s)	38, 93, 375
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	7 cut(s)	142, 205, 329, 490, 703, 712, 769
BstX2I	RGATCY	3 cut(s)	385, 496, 847
BstYI	RGATCY	3 cut(s)	385, 496, 847
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	98, 422, 699
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	295, 475
Cac8I	GCNNGC	2 cut(s)	893, 942
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	3 cut(s)	26, 155, 211
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	4 cut(s)	97, 421, 654, 697
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	928, 953
CviAII	CATG	7 cut(s)	212, 311, 466, 611, 776, 892, 937
CviQI	GTAC	2 cut(s)	928, 953
DdeI	CTNAG	5 cut(s)	393, 852, 867, 887, 910
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	4 cut(s)	14, 387, 498, 849
DpnII	GATC	4 cut(s)	12, 385, 496, 847
DraI	TTTAAA	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	555, 938
EarI	CTCTTC	2 cut(s)	555, 938
Eco130I	CCWWGG	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	3 cut(s)	501, 705, 807
EcoNI	CCTNNNNNAGG	1 cut(s)	830
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	465
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	7 cut(s)	215, 314, 469, 614, 779, 895, 940
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	7 cut(s)	211, 310, 465, 610, 775, 891, 936
Fnu4HI	GCNGC	9 cut(s)	27, 156, 219, 318, 504, 674, 717, 726, 783
FokI	GGATG	2 cut(s)	282, 482
Fsp4HI	GCNGC	9 cut(s)	27, 156, 219, 318, 504, 674, 717, 726, 783
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	3 cut(s)	25, 154, 210
GluI	GCNGC	9 cut(s)	27, 156, 219, 318, 504, 674, 717, 726, 783
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	2 cut(s)	27, 156
HaeIII	GGCC	3 cut(s)	98, 422, 699
HapII	CCGG	4 cut(s)	39, 56, 95, 509
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	3 cut(s)	26, 155, 211
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	7 cut(s)	215, 314, 469, 614, 779, 895, 940
Hin6I	GCGC	3 cut(s)	24, 153, 209
HinP1I	GCGC	3 cut(s)	24, 153, 209
HinfI	GANTC	5 cut(s)	47, 191, 607, 644, 854
HpaII	CCGG	4 cut(s)	39, 56, 95, 509
HphI	GGTGA	3 cut(s)	76, 471, 629
Hpy188I	TCNGA	4 cut(s)	112, 385, 606, 870
Hpy188III	TCNNGA	4 cut(s)	311, 395, 554, 851
Hpy99I	CGWCG	3 cut(s)	20, 23, 55
HpyAV	CCTTC	2 cut(s)	836, 899
HpyCH4III	ACNGT	1 cut(s)	957
HpyCH4V	TGCA	9 cut(s)	227, 241, 295, 335, 506, 599, 806, 842, 940
HpyF3I	CTNAG	5 cut(s)	393, 852, 867, 887, 910
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	7 cut(s)	215, 314, 469, 614, 779, 895, 940
HspAI	GCGC	3 cut(s)	24, 153, 209
KasI	GGCGCC	1 cut(s)	23
KflI	GGGWCCC	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	12, 385, 496, 847
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	2 cut(s)	112, 949
Lsp1109I	GCAGC	7 cut(s)	142, 205, 329, 490, 703, 712, 769
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	4 cut(s)	14, 387, 498, 849
MbiI	CCGCTC	2 cut(s)	115, 580
MboI	GATC	4 cut(s)	12, 385, 496, 847
MboII	GAAGA	5 cut(s)	186, 457, 516, 542, 925
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	3 cut(s)	385, 496, 847
MhlI	GDGCHC	2 cut(s)	667, 762
MluCI	AATT	5 cut(s)	174, 336, 432, 701, 836
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	56, 863
MmeI	TCCRAC	1 cut(s)	759
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	3 cut(s)	365, 426, 539
MslI	CAYNNNNRTG	2 cut(s)	615, 743
MspA1I	CMGCKG	3 cut(s)	320, 503, 725
MspI	CCGG	4 cut(s)	39, 56, 95, 509
MspR9I	CCNGG	3 cut(s)	40, 95, 377
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	248
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	2 cut(s)	40, 95
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	4 cut(s)	12, 385, 496, 847
NlaIII	CATG	7 cut(s)	215, 314, 469, 614, 779, 895, 940
NlaIV	GGNNCC	7 cut(s)	25, 387, 498, 655, 656, 799, 849
NspI	RCATGY	1 cut(s)	895
PaeI	GCATGC	1 cut(s)	895
PagI	TCATGA	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	555
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	191, 607, 644
PkrI	GCNGC	9 cut(s)	28, 157, 220, 319, 505, 675, 718, 727, 784
PleI	GAGTC	2 cut(s)	55, 862
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	2 cut(s)	55, 862
PpuMI	RGGWCCY	1 cut(s)	654
Psp5II	RGGWCCY	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	7 cut(s)	25, 387, 498, 655, 656, 799, 849
PspPI	GGNCC	4 cut(s)	97, 421, 654, 697
PspPPI	RGGWCCY	1 cut(s)	654
PsuI	RGATCY	3 cut(s)	385, 496, 847
PvuII	CAGCTG	2 cut(s)	503, 725
RsaI	GTAC	2 cut(s)	929, 954
RsaNI	GTAC	2 cut(s)	928, 953
RseI	CAYNNNNRTG	2 cut(s)	615, 743
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	365, 426, 539
SatI	GCNGC	9 cut(s)	27, 156, 219, 318, 504, 674, 717, 726, 783
Sau3AI	GATC	4 cut(s)	12, 385, 496, 847
Sau96I	GGNCC	4 cut(s)	97, 421, 654, 697
SchI	GAGTC	2 cut(s)	56, 863
ScrFI	CCNGG	3 cut(s)	40, 95, 377
SduI	GDGCHC	2 cut(s)	667, 762
SfaNI	GCATC	1 cut(s)	304
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	654
SmiMI	CAYNNNNRTG	2 cut(s)	615, 743
SmlI	CTYRAG	2 cut(s)	830, 948
SmoI	CTYRAG	2 cut(s)	830, 948
SphI	GCATGC	1 cut(s)	895
Sse9I	AATT	5 cut(s)	174, 336, 432, 701, 836
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	38, 93, 375
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	957
TaqI	TCGA	4 cut(s)	15, 45, 90, 430
TasI	AATT	5 cut(s)	174, 336, 432, 701, 836
TatI	WGTACW	1 cut(s)	952
TauI	GCSGC	2 cut(s)	29, 676
TfiI	GAWTC	3 cut(s)	191, 607, 644
Tru1I	TTAA	3 cut(s)	365, 426, 539
Tru9I	TTAA	3 cut(s)	365, 426, 539
TseI	GCWGC	7 cut(s)	155, 218, 317, 503, 716, 725, 782
TspDTI	ATGAA	4 cut(s)	486, 636, 918, 925
VpaK11BI	GGWCC	1 cut(s)	654
XagI	CCTNNNNNAGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	836
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.