Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010095

Physical Location & Seq

Genomic Coordinates Reverse (-)

20402662 .. 20405390

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G227700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGTTCACTGAATGAAGACGGCACCACGACCAGCTTTGAGTCATCACCGGAGATGGTGAAGTTTCTCTGCGACCGATTGCTCGACCCGACCCAGCCCATCTCGGAGCGCTTCAGAGCCTTGTTCTCTCTCCGCAACCTCAAAGGCCCTGGCCCTCGCAACGCACTCATTACCGCAACAAGAGATTCTTCTAATTTGTTGGCGCATGAGGCTGCATTTGCATTGGGTCAAATGCAAGATGCGGATGCAATCCCTGCTTTGGTAGCGGTTCTCAATGATCTCTCTTTGCATCCCATAGTTCGTCATGAGGCAGCAGAAGCTCTTGGTGCAATTGGTTTAGAGAGCAATGTTCCTCTTTTAGAGAATAGTCTGGCTTTAGATCCAGCTCAGGAGGTAAAAGAAACTTGTGCGTTGGCCCTTAATCGAATAGAGCAGTTGAAGGATTCTGGTAATCAATCCTTGGATGAAAAGTCACCTTTTATGTCAGTTGATCCTGCTGCACCAGCTACTTCTTCTTCTTCTGTAAATCAGCTAAGGGAAGTTCTTCTGGATGAAAAGAAAAACATGTATGAGCGCTATGCAGCTTTATTTGCTCTGCGGAATAATAGTGGAGATGAAGCTGTTTCCGCTATAGTTGATTCTTTGGGTTCAAAAAGTGCCCTCTTGCGTCATGAGGTTGCTTATGTGTTAGGACAATTGCAAAACAAAGATGCTTCAGCCGCTCTTTCCAACATACTTATGGATAGAAATGAGCACCCAATGGTTAGACATGAAGCTGCTGAAGCTCTGGGTTCCATTGCAGACGACCAAAGTGTATCACTTCTCGAGGAATTCGCAAAGGACCCTGAGCCTATCGTGTCACAGAGTTGTGAAGTTGCTCTAAGCATGCTGGAATTTGAAAGATCAGGAAAATCCTTTGAGTACCTCTTCATGCAAGCTCCTCCAGTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0008612 GO:0009058 GO:0009987 GO:0010467 GO:0016491 GO:0016705 GO:0018193 GO:0018205 GO:0019135 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0055114 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT_2 HEAT_PBS

Protein Analysis

318

Amino Acids

34.36

Weight (kDa)

4.63

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58180
fragaria_vesca	FvH4_2g22010 FvH4_2g22010 FvH4_2g22010 FvH4_2g22010
malus_domestica	MD05G1201100.v1.1 MD10G1187900.v1.1
prunus_persica	Prupe.8G227700_v2.0.a1
pyrus_communis	pycom05g18790 pycom10g16240
rosa_chinensis	RchiOBHm_Chr6g0288871
rosa_laevigata	RLG00000012359
rosa_multiflora	Rmu_sc0005314.1_g000008
rosa_roxburghii	Rroxscaffold_7G00179820
rosa_rugosa	Rorug06G0198900 Rorug06G0198900
rosa_samantha	Rh6AG310100 Rh6BG316000 Rh6CG323500 Rh6DG309200
rosa_wichuraiana	Rw6G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	722
AciI	CCGC	7 cut(s)	133, 174, 242, 266, 598, 627, 720
AclWI	GGATC	2 cut(s)	374, 485
AcsI	RAATTY	2 cut(s)	830, 893
AcuI	CTGAAG	3 cut(s)	97, 699, 801
AfaI	GTAC	1 cut(s)	923
AfeI	AGCGCT	2 cut(s)	110, 575
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	3 cut(s)	439, 651, 899
AjnI	CCWGG	1 cut(s)	148
Alw21I	GWGCWC	1 cut(s)	756
AlwI	GGATC	2 cut(s)	374, 485
Ama87I	CYCGRG	1 cut(s)	824
Aor51HI	AGCGCT	2 cut(s)	110, 575
AoxI	GGCC	3 cut(s)	145, 151, 414
ApeKI	GCWGC	5 cut(s)	212, 311, 497, 581, 776
ApoI	RAATTY	2 cut(s)	830, 893
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	3 cut(s)	111, 205, 576
AspS9I	GGNCC	4 cut(s)	146, 152, 415, 841
AsuHPI	GGTGA	3 cut(s)	39, 70, 465
AvaI	CYCGRG	1 cut(s)	824
AvaII	GGWCC	1 cut(s)	841
BaeGI	GKGCMC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	756
BbvI	GCAGC	5 cut(s)	199, 323, 484, 593, 763
BccI	CCATC	2 cut(s)	49, 107
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	2 cut(s)	112, 577
BisI	GCNGC	6 cut(s)	213, 312, 498, 582, 720, 777
BlsI	GCNGC	6 cut(s)	214, 313, 499, 583, 721, 778
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	841
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	4 cut(s)	146, 152, 415, 841
BmiI	GGNNCC	3 cut(s)	25, 793, 843
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	4 cut(s)	229, 235, 298, 700
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	927
Bpu10I	CCTNAGC	3 cut(s)	387, 533, 846
BsaJI	CCNNGG	2 cut(s)	148, 459
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	944
Bse3DI	GCAATG	2 cut(s)	352, 795
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	148, 459
BseGI	GGATG	4 cut(s)	250, 289, 469, 556
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	2 cut(s)	352, 795
BseMII	CTCAG	2 cut(s)	401, 837
BseNI	ACTGG	1 cut(s)	944
BseRI	GAGGAG	1 cut(s)	930
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	5 cut(s)	199, 323, 484, 593, 763
BseYI	CCCAGC	1 cut(s)	93
BsgI	GTGCAG	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	147, 153, 416
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	756
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	3 cut(s)	147, 153, 416
BsoBI	CYCGRG	1 cut(s)	824
Bsp1286I	GDGCHC	2 cut(s)	661, 756
Bsp143I	GATC	4 cut(s)	277, 379, 490, 902
BspACI	CCGC	7 cut(s)	133, 174, 242, 266, 598, 627, 720
BspANI	GGCC	3 cut(s)	147, 153, 416
BspCNI	CTCAG	2 cut(s)	400, 838
BspHI	TCATGA	2 cut(s)	304, 670
BspLI	GGNNCC	3 cut(s)	25, 793, 843
BspPI	GGATC	2 cut(s)	374, 485
BspT107I	GGYRCC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	722
BsrDI	GCAATG	2 cut(s)	352, 795
BsrI	ACTGG	1 cut(s)	944
BssECI	CCNNGG	2 cut(s)	148, 459
BssMI	GATC	4 cut(s)	277, 379, 490, 902
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	932
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	887, 936
BstDEI	CTNAG	4 cut(s)	387, 533, 846, 881
BstF5I	GGATG	4 cut(s)	250, 289, 469, 556
BstH2I	RGCGCY	2 cut(s)	112, 577
BstHHI	GCGC	3 cut(s)	111, 205, 576
BstKTI	GATC	4 cut(s)	280, 382, 493, 905
BstMBI	GATC	4 cut(s)	277, 379, 490, 902
BstMCI	CGRYCG	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	2 cut(s)	568, 889
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	5 cut(s)	199, 323, 484, 593, 763
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	147, 153, 416
BtsCI	GGATG	4 cut(s)	250, 289, 469, 556
BtsIMutI	CAGTG	2 cut(s)	8, 951
Cac8I	GCNNGC	2 cut(s)	887, 936
CciI	TCATGA	2 cut(s)	304, 670
CfoI	GCGC	3 cut(s)	111, 205, 576
Cfr13I	GGNCC	4 cut(s)	146, 152, 415, 841
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	1 cut(s)	922
CviAII	CATG	7 cut(s)	206, 305, 565, 671, 770, 886, 931
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	4 cut(s)	387, 533, 846, 881
DpnI	GATC	4 cut(s)	279, 381, 492, 904
DpnII	GATC	4 cut(s)	277, 379, 490, 902
Eam1104I	CTCTTC	1 cut(s)	932
EarI	CTCTTC	1 cut(s)	932
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	841
Eco47III	AGCGCT	2 cut(s)	110, 575
Eco57I	CTGAAG	3 cut(s)	97, 699, 801
Eco88I	CYCGRG	1 cut(s)	824
EcoO109I	RGGNCCY	2 cut(s)	146, 841
EcoRI	GAATTC	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	7 cut(s)	209, 308, 568, 674, 773, 889, 934
FalI	AAGNNNNNCTT	2 cut(s)	172, 204
FatI	CATG	7 cut(s)	205, 304, 564, 670, 769, 885, 930
Fnu4HI	GCNGC	6 cut(s)	213, 312, 498, 582, 720, 777
FokI	GGATG	4 cut(s)	257, 276, 476, 563
Fsp4HI	GCNGC	6 cut(s)	213, 312, 498, 582, 720, 777
GlaI	GCGC	3 cut(s)	110, 204, 575
GluI	GCNGC	6 cut(s)	213, 312, 498, 582, 720, 777
GsaI	CCCAGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	927
HaeII	RGCGCY	2 cut(s)	112, 577
HaeIII	GGCC	3 cut(s)	147, 153, 416
HapII	CCGG	1 cut(s)	50
HgaI	GACGC	1 cut(s)	656
HhaI	GCGC	3 cut(s)	111, 205, 576
Hin1II	CATG	7 cut(s)	209, 308, 568, 674, 773, 889, 934
Hin6I	GCGC	3 cut(s)	109, 203, 574
HinP1I	GCGC	3 cut(s)	109, 203, 574
HinfI	GANTC	4 cut(s)	41, 185, 443, 638
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	3 cut(s)	39, 70, 465
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	106, 116
Hpy188III	TCNNGA	6 cut(s)	305, 389, 548, 671, 824, 906
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	433
HpyF3I	CTNAG	4 cut(s)	387, 533, 846, 881
Hsp92II	CATG	7 cut(s)	209, 308, 568, 674, 773, 889, 934
HspAI	GCGC	3 cut(s)	109, 203, 574
Kzo9I	GATC	4 cut(s)	277, 379, 490, 902
LmnI	GCTCC	2 cut(s)	106, 943
Lsp1109I	GCAGC	5 cut(s)	199, 323, 484, 593, 763
LweI	GCATC	4 cut(s)	229, 235, 298, 700
MaeIII	GTNAC	2 cut(s)	471, 858
MalI	GATC	4 cut(s)	279, 381, 492, 904
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	4 cut(s)	277, 379, 490, 902
MboII	GAAGA	7 cut(s)	29, 180, 504, 507, 510, 536, 919
MfeI	CAATTG	2 cut(s)	330, 695
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	661, 756
MluCI	AATT	5 cut(s)	193, 330, 695, 830, 893
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	753
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	737
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	2 cut(s)	330, 695
MvaI	CCWGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	277, 379, 490, 902
NlaIII	CATG	7 cut(s)	209, 308, 568, 674, 773, 889, 934
NlaIV	GGNNCC	3 cut(s)	25, 793, 843
NmuCI	GTSAC	2 cut(s)	471, 858
NspI	RCATGY	2 cut(s)	568, 889
PaeI	GCATGC	1 cut(s)	889
PaeR7I	CTCGAG	1 cut(s)	824
PagI	TCATGA	2 cut(s)	304, 670
PciI	ACATGT	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	3 cut(s)	185, 443, 638
PkrI	GCNGC	6 cut(s)	214, 313, 499, 583, 721, 778
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	841
PscI	ACATGT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	25, 793, 843
PspPI	GGNCC	4 cut(s)	146, 152, 415, 841
PspPPI	RGGWCCY	1 cut(s)	841
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
RseI	CAYNNNNRTG	1 cut(s)	737
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	6 cut(s)	213, 312, 498, 582, 720, 777
Sau3AI	GATC	4 cut(s)	277, 379, 490, 902
Sau96I	GGNCC	4 cut(s)	146, 152, 415, 841
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	661, 756
SfaNI	GCATC	4 cut(s)	229, 235, 298, 700
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	824
SinI	GGWCC	1 cut(s)	841
SlaI	CTCGAG	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
SphI	GCATGC	1 cut(s)	889
Sse9I	AATT	5 cut(s)	193, 330, 695, 830, 893
SsiI	CCGC	7 cut(s)	133, 174, 242, 266, 598, 627, 720
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	459
TaqI	TCGA	3 cut(s)	84, 424, 825
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	5 cut(s)	193, 330, 695, 830, 893
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	3 cut(s)	185, 443, 638
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	2 cut(s)	15, 951
TseFI	GTSAC	2 cut(s)	471, 858
TseI	GCWGC	5 cut(s)	212, 311, 497, 581, 776
Tsp45I	GTSAC	2 cut(s)	471, 858
TspDTI	ATGAA	6 cut(s)	30, 480, 567, 630, 786, 919
TspRI	CASTG	2 cut(s)	15, 951
VpaK11BI	GGWCC	1 cut(s)	841
XapI	RAATTY	2 cut(s)	830, 893
XceI	RCATGY	2 cut(s)	568, 889
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XhoI	CTCGAG	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.