Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Reverse (-)

22242500 .. 22244125

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAAACTCCTATCGATGCTCCGAATAAGGACGAACATGAATGCCCTAGGTGGAAGAAATCAACTGTAGTTTTTGTGTTGGGTGGTCCTGGAAGTGGAAAAGGTACTCAGTGTGCTAATGTTGTGAAGCACTTTAGCTATACCCATTTTAGTGCTGGTGATCTTCTCAGAGCAGAAATTAAGTCCGGTTCTGAATTTGGAGCCATGATCCAAAGTATGATTGCAGAGGGGAGAATAGTGCCGTCTGAGATCACAGTGAAACTTTTGTGTAAAGCTATGGAGGAAAGTGGTAATGATAAGTTCCTTATTGATGGCTTCCCTCGCAATGAAGAAAATCGAAACGTATTCGAAAATGTTGCTAGAATCGAGCCTGCTTTTGTTCTATTCTTTGATTGTCCAGAAGAAGAACTAGAAAGACGCATTATGAGCAGGAACCAGGGAAGAGAAGACGATAATATAGAGACCATAAAGAAGCGATTTAAAGTGTTTGTTGAATCTACCCTCCCAATTATTAGCTACTACGAATCGAAAGGGAAACTTCGAAAGATCAATGCTGCAAAATCCAGCGAAGAGGTTTTCGAGGCTGTCAGAGTTCTATTTGCATCTGAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004127 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009041 GO:0009058 GO:0009117 GO:0009123 GO:0009129 GO:0009161 GO:0009165 GO:0009173 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046940 GO:0048046 GO:0050145 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:0097159 GO:0097367 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

204

Amino Acids

23.05

Weight (kDa)

5.59

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	24 - 150	1.2e-07	AAA domain
ADK	PF00406	26 - 178	1.5e-46	Adenylate kinase
AAA_17	PF13207	27 - 157	1.2e-34	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	88, 435
AluBI	AGCT	3 cut(s)	138, 275, 516
AluI	AGCT	3 cut(s)	138, 275, 516
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	194
AspA2I	CCTAGG	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	170
AsuII	TTCGAA	2 cut(s)	348, 541
AvaII	GGWCC	1 cut(s)	86
AvrII	CCTAGG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	2 cut(s)	90, 437
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	3 cut(s)	48, 360, 410
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	555
BlnI	CCTAGG	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	2 cut(s)	90, 437
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	202, 434
BmrFI	CCNGG	2 cut(s)	90, 437
BmsI	GCATC	2 cut(s)	7, 611
BpiI	GAAGAC	1 cut(s)	453
Bpu14I	TTCGAA	2 cut(s)	348, 541
Bsa29I	ATCGAT	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	47, 436
BsaWI	WCCGGW	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	90, 437
BseCI	ATCGAT	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	47, 436
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	122, 181, 237
BseXI	GCAGC	1 cut(s)	541
BshVI	ATCGAT	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	455
Bsp119I	TTCGAA	2 cut(s)	348, 541
Bsp143I	GATC	4 cut(s)	160, 207, 249, 546
BspCNI	CTCAG	3 cut(s)	121, 180, 238
BspDI	ATCGAT	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	202, 434
BspPI	GGATC	1 cut(s)	202
BspT104I	TTCGAA	2 cut(s)	348, 541
BspTNI	GGTCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	47, 436
BssMI	GATC	4 cut(s)	160, 207, 249, 546
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	90, 437
Bst4CI	ACNGT	2 cut(s)	67, 256
Bst6I	CTCTTC	2 cut(s)	436, 564
BstBI	TTCGAA	2 cut(s)	348, 541
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	108, 167, 246
BstKTI	GATC	4 cut(s)	163, 210, 252, 549
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	160, 207, 249, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 426
BstNI	CCWGG	2 cut(s)	90, 437
BstSCI	CCNGG	2 cut(s)	88, 435
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	453
Bsu15I	ATCGAT	1 cut(s)	15
BsuTUI	ATCGAT	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	116, 261
Cac8I	GCNNGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	15
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	2 cut(s)	38, 205
CviJI	RGCY	7 cut(s)	138, 203, 275, 315, 370, 516, 584
CviKI_1	RGCY	7 cut(s)	138, 203, 275, 315, 370, 516, 584
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	3 cut(s)	108, 167, 246
DpnI	GATC	4 cut(s)	162, 209, 251, 548
DpnII	GATC	4 cut(s)	160, 207, 249, 546
DraI	TTTAAA	1 cut(s)	481
Eam1104I	CTCTTC	2 cut(s)	436, 564
EarI	CTCTTC	2 cut(s)	436, 564
Eco130I	CCWWGG	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	88, 435
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	41, 208
FaiI	YATR	8 cut(s)	39, 141, 206, 218, 278, 425, 458, 467
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FatI	CATG	2 cut(s)	37, 204
Fnu4HI	GCNGC	1 cut(s)	555
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	3 cut(s)	48, 360, 410
GluI	GCNGC	1 cut(s)	555
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	41, 208
HinfI	GANTC	3 cut(s)	363, 494, 524
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	6 cut(s)	24, 170, 193, 247, 590, 607
Hpy188III	TCNNGA	1 cut(s)	398
HpyCH4III	ACNGT	2 cut(s)	67, 256
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	224, 557, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 426
HpyF3I	CTNAG	3 cut(s)	108, 167, 246
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	41, 208
Kzo9I	GATC	4 cut(s)	160, 207, 249, 546
LmnI	GCTCC	2 cut(s)	25, 200
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	2 cut(s)	7, 611
MaeI	CTAG	3 cut(s)	48, 360, 410
MaeII	ACGT	1 cut(s)	342
MalI	GATC	4 cut(s)	162, 209, 251, 548
MboI	GATC	4 cut(s)	160, 207, 249, 546
MboII	GAAGA	8 cut(s)	67, 155, 341, 413, 416, 453, 458, 581
MluCI	AATT	3 cut(s)	177, 194, 507
MnlI	CCTC	6 cut(s)	220, 274, 330, 512, 565, 574
MseI	TTAA	2 cut(s)	180, 480
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	90, 437
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	2 cut(s)	90, 437
MwoI	GCNNNNNNNGC	2 cut(s)	321, 426
NdeII	GATC	4 cut(s)	160, 207, 249, 546
NlaIII	CATG	2 cut(s)	41, 208
NlaIV	GGNNCC	2 cut(s)	202, 434
NspV	TTCGAA	2 cut(s)	348, 541
PctI	GAATGC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	363, 494, 524
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	556
Psp6I	CCWGG	2 cut(s)	88, 435
PspGI	CCWGG	2 cut(s)	88, 435
PspN4I	GGNNCC	2 cut(s)	202, 434
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	180, 480
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	4 cut(s)	160, 207, 249, 546
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	90, 437
SetI	ASST	7 cut(s)	53, 106, 140, 277, 345, 518, 576
SfaNI	GCATC	2 cut(s)	7, 611
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	2 cut(s)	348, 541
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	3 cut(s)	177, 194, 507
SspMI	CTAG	3 cut(s)	48, 360, 410
StyD4I	CCNGG	2 cut(s)	88, 435
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	67, 256
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	7 cut(s)	15, 337, 348, 366, 527, 541, 579
TasI	AATT	3 cut(s)	177, 194, 507
TfiI	GAWTC	3 cut(s)	363, 494, 524
Tru1I	TTAA	2 cut(s)	180, 480
Tru9I	TTAA	2 cut(s)	180, 480
TscAI	CASTG	2 cut(s)	116, 261
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	2 cut(s)	54, 342
TspRI	CASTG	2 cut(s)	116, 261
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	47
XspI	CTAG	3 cut(s)	48, 360, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.