Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Forward (+)

6567447 .. 6568076

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG083800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGAACAGCTGTGGGCGCAGTCGACAACAAGGAGACAGCTCGAAGCTTAGCTGATCTGAATCCTAGTGTAGTGTTTGTCTTGGGTGGTCCAGGCAGTGGAAAGGGTACCCAATGTGCAAACATTGTTAAGCATTTTGGGTACACCCATCTCAGTGCTGGTGATCTTCTACGAGCTGAAAGGAATTCTGGTTCTGAAAATGGAACCATGATTTCGAACATGATCAAAGAAGGACAAATTGTTCCTGCGGTGGTGACGATTAAGCTTCTGGAGCGAGCAATGCTGGAGAGTGGTAATGACAAGTTTCTCATTGATGGGTTTCCTCGTAATGAAGAAAACCGTGCTGCATTTGAGGATGTGACTAAAATCATGCCCTCATTCGTCCTGTATTTTGATTGTTCTGAAGAGGAGATGGAGAGGCGCCTTTTGAGTAGGAACCAGGGGAGAGAGGATGATAATGTAGAAACAATAAGGAAGAGGTTTAAGGTTTTTCTGGAGTCTACTCAAAAAGTTTTAGAGTACTATAACGCCCAGGGGAAGGTTCGAAAGATTGATGCTGGGAGGCCTGTTGAAGAGGTTTTCGAGTCAGTGAAAGGCATTTTTGGCCCCAAAAATGAGAAGGCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

209

Amino Acids

23.18

Weight (kDa)

5.63

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	24 - 162	1.9e-08	AAA domain
AAA_18	PF13238	25 - 153	9.3e-08	AAA domain
ADK	PF00406	27 - 179	2.9e-45	Adenylate kinase
AAA_17	PF13207	28 - 158	2.9e-36	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	2 cut(s)	107, 420
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	2 cut(s)	24, 500
AciI	CCGC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	3 cut(s)	109, 143, 521
AfiI	CCNNNNNNNGG	2 cut(s)	98, 538
AgsI	TTSAA	1 cut(s)	572
AjnI	CCWGG	3 cut(s)	91, 438, 531
AloI	GAACNNNNNNTCC	4 cut(s)	175, 207, 225, 257
AluBI	AGCT	6 cut(s)	11, 41, 48, 53, 176, 265
AluI	AGCT	6 cut(s)	11, 41, 48, 53, 176, 265
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	3 cut(s)	563, 604, 621
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	20, 423
AspS9I	GGNCC	2 cut(s)	89, 605
AsuHPI	GGTGA	2 cut(s)	173, 265
AsuII	TTCGAA	2 cut(s)	215, 544
AvaII	GGWCC	1 cut(s)	89
BanI	GGYRCC	2 cut(s)	107, 420
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	156, 308, 406
BciT130I	CCWGG	3 cut(s)	93, 440, 533
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	1 cut(s)	345
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	3 cut(s)	93, 440, 533
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 605
BmiI	GGNNCC	5 cut(s)	109, 205, 422, 437, 607
BmrFI	CCNGG	3 cut(s)	93, 440, 533
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	3 cut(s)	290, 305, 515
Bpu1102I	GCTNAGC	1 cut(s)	49
Bpu14I	TTCGAA	2 cut(s)	215, 544
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	3 cut(s)	439, 531, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 538
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	3 cut(s)	93, 440, 533
BseDI	CCNNGG	3 cut(s)	439, 531, 532
BseGI	GGATG	2 cut(s)	361, 457
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	98, 538
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	3 cut(s)	565, 606, 623
BshNI	GGYRCC	2 cut(s)	107, 420
BslI	CCNNNNNNNGG	2 cut(s)	98, 538
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	3 cut(s)	565, 606, 623
Bsp119I	TTCGAA	2 cut(s)	215, 544
Bsp143I	GATC	3 cut(s)	55, 163, 222
Bsp1720I	GCTNAGC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	3 cut(s)	565, 606, 623
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	5 cut(s)	109, 205, 422, 437, 607
BspT104I	TTCGAA	2 cut(s)	215, 544
BspT107I	GGYRCC	2 cut(s)	107, 420
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	439, 531, 532
BssMI	GATC	3 cut(s)	55, 163, 222
BssNI	GRCGYC	1 cut(s)	421
Bst2UI	CCWGG	3 cut(s)	93, 440, 533
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	3 cut(s)	399, 470, 567
BstACI	GRCGYC	1 cut(s)	421
BstBI	TTCGAA	2 cut(s)	215, 544
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	49, 152
BstF5I	GGATG	2 cut(s)	361, 457
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	20, 423
BstKTI	GATC	3 cut(s)	58, 166, 225
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	55, 163, 222
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 271, 280, 603
BstNI	CCWGG	3 cut(s)	93, 440, 533
BstSCI	CCNGG	3 cut(s)	91, 438, 531
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	565, 606, 623
BtsCI	GGATG	2 cut(s)	361, 457
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	103, 160, 594
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	2 cut(s)	20, 423
Cfr13I	GGNCC	2 cut(s)	89, 605
Csp6I	GTAC	3 cut(s)	108, 142, 520
CviAII	CATG	3 cut(s)	208, 220, 370
CviJI	RGCY	9 cut(s)	11, 41, 48, 53, 176, 265, 565, 606, 623
CviKI_1	RGCY	9 cut(s)	11, 41, 48, 53, 176, 265, 565, 606, 623
CviQI	GTAC	3 cut(s)	108, 142, 520
DdeI	CTNAG	2 cut(s)	49, 152
DinI	GGCGCC	1 cut(s)	422
DpnI	GATC	3 cut(s)	57, 165, 224
DpnII	GATC	3 cut(s)	55, 163, 222
Eam1104I	CTCTTC	3 cut(s)	399, 470, 567
EarI	CTCTTC	3 cut(s)	399, 470, 567
Eco147I	AGGCCT	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	3 cut(s)	91, 438, 531
EgeI	GGCGCC	1 cut(s)	422
EheI	GGCGCC	1 cut(s)	422
FaeI	CATG	3 cut(s)	211, 223, 373
FaiI	YATR	4 cut(s)	209, 221, 371, 525
FatI	CATG	3 cut(s)	207, 219, 369
FbaI	TGATCA	1 cut(s)	222
FblI	GTMKAC	2 cut(s)	24, 500
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	368, 464
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	19, 422
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	3 cut(s)	290, 305, 515
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	565, 606, 623
HhaI	GCGC	2 cut(s)	20, 423
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	3 cut(s)	211, 223, 373
Hin6I	GCGC	2 cut(s)	18, 421
HinP1I	GCGC	2 cut(s)	18, 421
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	2 cut(s)	46, 263
HinfI	GANTC	3 cut(s)	61, 497, 584
HphI	GGTGA	2 cut(s)	173, 265
Hpy166II	GTNNAC	3 cut(s)	25, 144, 501
Hpy188I	TCNGA	3 cut(s)	60, 196, 403
Hpy188III	TCNNGA	2 cut(s)	269, 494
Hpy8I	GTNNAC	3 cut(s)	25, 144, 501
HpyAV	CCTTC	3 cut(s)	224, 532, 613
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	119, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 271, 280, 603
HpyF3I	CTNAG	2 cut(s)	49, 152
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	3 cut(s)	211, 223, 373
HspAI	GCGC	2 cut(s)	18, 421
KasI	GGCGCC	1 cut(s)	420
KpnI	GGTACC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	55, 163, 222
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	253, 358
MalI	GATC	3 cut(s)	57, 165, 224
MboI	GATC	3 cut(s)	55, 163, 222
MboII	GAAGA	5 cut(s)	158, 344, 416, 487, 584
MluCI	AATT	2 cut(s)	184, 237
Mly113I	GGCGCC	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	506, 593
MnlI	CCTC	9 cut(s)	333, 346, 385, 400, 411, 442, 471, 555, 568
MseI	TTAA	3 cut(s)	129, 261, 483
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	93, 440, 533
MvaI	CCWGG	3 cut(s)	93, 440, 533
MwoI	GCNNNNNNNGC	4 cut(s)	17, 271, 280, 603
NarI	GGCGCC	1 cut(s)	421
NdeII	GATC	3 cut(s)	55, 163, 222
NlaIII	CATG	3 cut(s)	211, 223, 373
NlaIV	GGNNCC	5 cut(s)	109, 205, 422, 437, 607
NmuCI	GTSAC	2 cut(s)	253, 358
NspV	TTCGAA	2 cut(s)	215, 544
PasI	CCCWGGG	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	565
PfeI	GAWTC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	2 cut(s)	505, 592
PluTI	GGCGCC	1 cut(s)	424
PpsI	GAGTC	2 cut(s)	505, 592
Psp6I	CCWGG	3 cut(s)	91, 438, 531
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	3 cut(s)	91, 438, 531
PspN4I	GGNNCC	5 cut(s)	109, 205, 422, 437, 607
PspPI	GGNCC	2 cut(s)	89, 605
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	109, 143, 521
RsaNI	GTAC	3 cut(s)	108, 142, 520
RseI	CAYNNNNRTG	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	129, 261, 483
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	3 cut(s)	55, 163, 222
Sau96I	GGNCC	2 cut(s)	89, 605
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	2 cut(s)	506, 593
ScrFI	CCNGG	3 cut(s)	93, 440, 533
SfaNI	GCATC	1 cut(s)	544
SfoI	GGCGCC	1 cut(s)	422
SfuI	TTCGAA	2 cut(s)	215, 544
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	184, 237
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	248
SspDI	GGCGCC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	91, 438, 531
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	5 cut(s)	24, 43, 215, 544, 582
TasI	AATT	2 cut(s)	184, 237
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	3 cut(s)	129, 261, 483
Tru9I	TTAA	3 cut(s)	129, 261, 483
TscAI	CASTG	3 cut(s)	103, 160, 594
TseFI	GTSAC	2 cut(s)	253, 358
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	2 cut(s)	253, 358
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	3 cut(s)	103, 160, 594
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XmiI	GTMKAC	2 cut(s)	24, 500
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.